| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | ccgtgcg | 7 | ||
| MIMAT0018679 | tca-miR-3825-3p | 2 | ....... | 8 | 100 |
| MIMAT0037213 | ata-miR164a-3p | 3 | _...... | 8 | 85 |
| MIMAT0034747 | eca-miR-9169 | 6 | ......_ | 1 | 85 |
| MIMAT0034674 | eca-miR-1379 | 6 | ......_ | 1 | 85 |
| MIMAT0034443 | eca-miR-8915 | 8 | ......_ | 3 | 85 |
| MIMAT0031398 | mmu-miR-8096 | 8 | ......_ | 3 | 85 |
| MIMAT0028336 | mml-miR-7189-5p | 1 | ......_ | 6 | 85 |
| MIMAT0027715 | mmu-miR-6907-3p | 3 | _...... | 8 | 85 |
| MIMAT0025698 | gga-miR-6604-5p | 8 | ......_ | 3 | 85 |
| MIMAT0025633 | gga-miR-6564-5p | 3 | ......_ | 8 | 85 |
| MIMAT0025040 | sma-miR-3492 | 3 | ......_ | 8 | 85 |
| MIMAT0021469 | asu-miR-72-3p | 3 | ......_ | 8 | 85 |
| MIMAT0021327 | mtr-miR5283 | 1 | _...... | 6 | 85 |
| MIMAT0027044 | bdi-miR160a-3p | 2 | _...... | 7 | 85 |
| MIMAT0019640 | pma-miR-4606 | 3 | _...... | 8 | 85 |
| MIMAT0019638 | pma-miR-4604 | 2 | _...... | 7 | 85 |
| MIMAT0019594 | pma-miR-4562 | 1 | _...... | 6 | 85 |
| MIMAT0018365 | far-miR1119 | 8 | ......_ | 3 | 85 |
| MIMAT0018726 | tca-miR-3841-5p | 1 | _...... | 6 | 85 |
| MIMAT0016807 | cin-miR-4189-5p | 2 | _...... | 7 | 85 |
| MIMAT0016659 | cin-miR-4085-5p | 7 | _...... | 2 | 85 |
| MIMAT0016301 | sja-miR-3492 | 3 | ......_ | 8 | 85 |
| MIMAT0016009 | ppy-miR-564 | 8 | ......_ | 3 | 85 |
| MIMAT0015318 | zma-miR164f-3p | 3 | _...... | 8 | 85 |
| MIMAT0012212 | dme-miR-2499-5p | 1 | _...... | 6 | 85 |
| MIMAT0010204 | hsv2-miR-H4-3p | 1 | ......_ | 6 | 85 |
| MIMAT0008398 | hsv1-miR-H2-5p | 7 | _...... | 2 | 85 |
| MIMAT0019092 | tca-miR-1-5p | 1 | ......_ | 6 | 85 |
| MIMAT0008243 | ptr-miR-564 | 8 | ......_ | 3 | 85 |
| MIMAT0007634 | gga-miR-1732 | 3 | ......_ | 8 | 85 |
| MIMAT0007527 | gga-miR-1649-3p | 3 | ......_ | 8 | 85 |
| MIMAT0005354 | tae-miR1119 | 8 | ......_ | 3 | 85 |
| MIMAT0004416 | rrv-miR-rR1-7-3p | 6 | _...... | 1 | 85 |
| MIMAT0017274 | mmu-miR-466h-3p | 8 | _...... | 3 | 85 |
| MIMAT0015222 | bmo-miR-1a-5p | 1 | ......_ | 6 | 85 |
| MIMAT0003228 | hsa-miR-564 | 8 | ......_ | 3 | 85 |
| MIMAT0015209 | zma-miR160f-3p | 2 | _...... | 7 | 85 |
| MIMAT0015134 | zma-miR160d-3p | 2 | _...... | 7 | 85 |
| MIMAT0022867 | osa-miR160e-3p | 2 | _...... | 7 | 85 |
| MIMAT0022854 | osa-miR160d-3p | 2 | _...... | 7 | 85 |
