| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | ccgtgctt | 8 | ||
| MIMAT0010204 | hsv2-miR-H4-3p | 1 | ........ | 8 | 100 |
| MIMAT0019092 | tca-miR-1-5p | 1 | ........ | 8 | 100 |
| MIMAT0015222 | bmo-miR-1a-5p | 1 | ........ | 8 | 100 |
| MIMAT0035811 | tae-miR9657b-3p | 1 | _....... | 7 | 87 |
| MIMAT0035807 | tae-miR9657c-3p | 1 | _....... | 7 | 87 |
| MIMAT0034443 | eca-miR-8915 | 8 | ......._ | 2 | 87 |
| MIMAT0032847 | ppc-miR-228-3p | 1 | _....... | 7 | 87 |
| MIMAT0030720 | prd-miR-1-5p | 2 | _....... | 8 | 87 |
| MIMAT0028336 | mml-miR-7189-5p | 1 | ......._ | 7 | 87 |
| MIMAT0007458 | gga-miR-1595-5p | 7 | _....... | 1 | 87 |
| MIMAT0005425 | cre-miR1168.2 | 7 | ......._ | 1 | 87 |
| MIMAT0016009 | ppy-miR-564 | 8 | ......c. | 1 | 87 |
| MIMAT0009615 | sko-miR-33-3p | 1 | .a...... | 8 | 87 |
| MIMAT0008243 | ptr-miR-564 | 8 | ......c. | 1 | 87 |
| MIMAT0003228 | hsa-miR-564 | 8 | ......c. | 1 | 87 |
| MIMAT0037247 | ata-miR9783-3p | 8 | __...... | 3 | 75 |
| MIMAT0037028 | ssc-miR-9810-3p | 8 | _......_ | 3 | 75 |
| MIMAT0036999 | tae-miR9783 | 8 | __...... | 3 | 75 |
| MIMAT0036836 | oha-miR-218-5p | 3 | __...... | 8 | 75 |
| MIMAT0036514 | tch-miR-218-5p | 3 | __...... | 8 | 75 |
| MIMAT0036418 | ggo-miR-519b | 3 | __...... | 8 | 75 |
| MIMAT0036409 | ggo-miR-520f | 3 | __...... | 8 | 75 |
| MIMAT0036144 | chi-miR-330-3p | 8 | __...... | 3 | 75 |
| MIMAT0036066 | chi-miR-218 | 3 | __...... | 8 | 75 |
| MIMAT0035871 | bra-miR164e-3p | 3 | _......_ | 8 | 75 |
| MIMAT0035765 | tae-miR9657a-3p | 2 | __...... | 7 | 75 |
| MIMAT0035068 | efu-miR-218b | 3 | __...... | 8 | 75 |
| MIMAT0035036 | efu-miR-218a | 3 | __...... | 8 | 75 |
| MIMAT0034880 | efu-miR-9260 | 3 | _......_ | 8 | 75 |
| MIMAT0034747 | eca-miR-9169 | 6 | ......__ | 1 | 75 |
| MIMAT0034674 | eca-miR-1379 | 6 | ......__ | 1 | 75 |
| MIMAT0034605 | eca-miR-9060 | 8 | _......_ | 3 | 75 |
| MIMAT0032807 | cel-miR-8197-5p | 2 | __...... | 7 | 75 |
| MIMAT0032524 | ssa-miR-218-5p | 3 | __...... | 8 | 75 |
| MIMAT0031751 | bma-miR-49 | 6 | __...... | 1 | 75 |
| MIMAT0031398 | mmu-miR-8096 | 8 | ......__ | 3 | 75 |
| MIMAT0031222 | stu-miR8041b-5p | 1 | __...... | 6 | 75 |
| MIMAT0031221 | stu-miR8041a-5p | 1 | __...... | 6 | 75 |
| MIMAT0030213 | bdi-miR7738-3p | 1 | __...... | 6 | 75 |
| MIMAT0030045 | oar-miR-218a | 3 | __...... | 8 | 75 |
| MIMAT0032195 | lva-miR-29a-3p | 6 | __...... | 1 | 75 |
| MIMAT0032145 | pmi-miR-29a-3p | 6 | __...... | 1 | 75 |
| MIMAT0029745 | cbn-miR-49 | 6 | __...... | 1 | 75 |
| MIMAT0029473 | ipu-miR-218b | 3 | __...... | 8 | 75 |
| MIMAT0029472 | ipu-miR-218a | 3 | __...... | 8 | 75 |
| MIMAT0026272 | ccr-miR-218b | 3 | __...... | 8 | 75 |
| MIMAT0026271 | ccr-miR-218a | 3 | __...... | 8 | 75 |
| MIMAT0027957 | mmu-miR-7026-3p | 2 | __...... | 7 | 75 |
| MIMAT0027921 | mmu-miR-7008-3p | 2 | __...... | 7 | 75 |
| MIMAT0027907 | mmu-miR-7002-3p | 3 | __...... | 8 | 75 |
| MIMAT0027571 | hsa-miR-6835-3p | 8 | __...... | 3 | 75 |
| MIMAT0025698 | gga-miR-6604-5p | 8 | ......__ | 3 | 75 |
| MIMAT0025633 | gga-miR-6564-5p | 3 | ......__ | 8 | 75 |
| MIMAT0025371 | ssc-miR-218 | 3 | __...... | 8 | 75 |
| MIMAT0025040 | sma-miR-3492 | 3 | ......__ | 8 | 75 |
| MIMAT0023855 | cgr-miR-218a | 3 | __...... | 8 | 75 |
| MIMAT0023250 | gma-miR2606b | 8 | __...... | 3 | 75 |
| MIMAT0023226 | gma-miR2606a | 8 | __...... | 3 | 75 |
| MIMAT0022609 | ola-miR-218b | 3 | __...... | 8 | 75 |
| MIMAT0022529 | ola-miR-218a | 3 | __...... | 8 | 75 |
| MIMAT0022325 | cin-miR-5601-5p | 3 | __...... | 8 | 75 |
| MIMAT0021880 | aca-miR-218-5p | 3 | __...... | 8 | 75 |
| MIMAT0021469 | asu-miR-72-3p | 3 | ......__ | 8 | 75 |
| MIMAT0021460 | asu-miR-49-3p | 6 | __...... | 1 | 75 |
| MIMAT0020589 | ssc-miR-218b | 3 | __...... | 8 | 75 |
| MIMAT0020048 | sko-miR-2006-3p | 6 | __...... | 1 | 75 |
| MIMAT0019531 | pma-miR-218b | 3 | __...... | 8 | 75 |
| MIMAT0019529 | pma-miR-218a-5p | 3 | __...... | 8 | 75 |
| MIMAT0019362 | hsa-miR-3977 | 1 | __...... | 6 | 75 |
| MIMAT0018365 | far-miR1119 | 8 | ......__ | 3 | 75 |
| MIMAT0018874 | tca-miR-3888-5p | 1 | __...... | 6 | 75 |
| MIMAT0018679 | tca-miR-3825-3p | 2 | ......__ | 7 | 75 |
| MIMAT0018549 | ame-miR-3773 | 7 | __...... | 2 | 75 |
| MIMAT0018020 | vvi-miR3628-3p | 8 | __...... | 3 | 75 |
| MIMAT0018008 | vvi-miR3623-3p | 3 | __...... | 8 | 75 |
| MIMAT0022961 | ssc-miR-218-5p | 3 | __...... | 8 | 75 |
| MIMAT0016301 | sja-miR-3492 | 3 | ......__ | 8 | 75 |
| MIMAT0016074 | ppy-miR-636 | 2 | __...... | 7 | 75 |
| MIMAT0015974 | ppy-miR-520f | 3 | __...... | 8 | 75 |
| MIMAT0017605 | aly-miR825-5p | 8 | __...... | 3 | 75 |
| MIMAT0015054 | hsa-miR-3177-3p | 7 | ......__ | 2 | 75 |
| MIMAT0014522 | tgu-miR-218-5p | 3 | __...... | 8 | 75 |
| MIMAT0014280 | aae-miR-988-5p | 3 | __...... | 8 | 75 |
| MIMAT0015319 | zma-miR164g-3p | 3 | _......_ | 8 | 75 |
| MIMAT0012928 | eca-miR-218 | 3 | __...... | 8 | 75 |
| MIMAT0011508 | crm-miR-49 | 6 | __...... | 1 | 75 |
| MIMAT0011445 | cel-miR-2215-5p | 8 | _......_ | 3 | 75 |
| MIMAT0011256 | sme-miR-2162-5p | 2 | __...... | 7 | 75 |
| MIMAT0009656 | spu-miR-29a | 6 | __...... | 1 | 75 |
| MIMAT0009448 | hsa-miR-1973 | 2 | ......__ | 7 | 75 |
| MIMAT0009278 | bta-miR-302a | 3 | __...... | 8 | 75 |
| MIMAT0008202 | ptr-miR-520f | 3 | __...... | 8 | 75 |
| MIMAT0006672 | cfa-miR-218 | 3 | __...... | 8 | 75 |
| MIMAT0006479 | mml-miR-636 | 2 | __...... | 7 | 75 |
| MIMAT0007661 | gga-miR-1754-5p | 2 | _......_ | 7 | 75 |
| MIMAT0007634 | gga-miR-1732 | 3 | ......__ | 8 | 75 |
| MIMAT0007527 | gga-miR-1649-3p | 3 | ......__ | 8 | 75 |
| MIMAT0006815 | oan-miR-218-5p | 3 | __...... | 8 | 75 |
| MIMAT0005354 | tae-miR1119 | 8 | ......__ | 3 | 75 |
| MIMAT0005241 | smo-miR1088-3p | 2 | _......_ | 7 | 75 |
| MIMAT0005207 | ppt-miR1076-3p | 8 | __...... | 3 | 75 |
| MIMAT0004133 | mdo-miR-218-5p | 3 | __...... | 8 | 75 |
| MIMAT0003798 | bta-miR-218 | 3 | __...... | 8 | 75 |
| MIMAT0003631 | xtr-miR-218 | 3 | __...... | 8 | 75 |
| MIMAT0003376 | mmu-miR-302c-3p | 3 | __...... | 8 | 75 |
| MIMAT0003306 | hsa-miR-636 | 2 | __...... | 7 | 75 |
| MIMAT0022927 | osa-miR535-3p | 1 | __...... | 6 | 75 |
| MIMAT0002994 | tni-miR-218a | 3 | __...... | 8 | 75 |
| MIMAT0002993 | fru-miR-218a | 3 | __...... | 8 | 75 |
| MIMAT0002986 | tni-miR-218b | 3 | __...... | 8 | 75 |
| MIMAT0002985 | fru-miR-218b | 3 | __...... | 8 | 75 |
| MIMAT0002830 | hsa-miR-520f-3p | 3 | __...... | 8 | 75 |
| MIMAT0002574 | mml-miR-218-5p | 3 | __...... | 8 | 75 |
| MIMAT0002573 | mne-miR-218 | 3 | __...... | 8 | 75 |
| MIMAT0002572 | lla-miR-218 | 3 | __...... | 8 | 75 |
| MIMAT0002571 | sla-miR-218 | 3 | __...... | 8 | 75 |
| MIMAT0002570 | ptr-miR-218 | 3 | __...... | 8 | 75 |
| MIMAT0002569 | ppy-miR-218 | 3 | __...... | 8 | 75 |
| MIMAT0002568 | lca-miR-218 | 3 | __...... | 8 | 75 |
| MIMAT0002567 | ppa-miR-218 | 3 | __...... | 8 | 75 |
| MIMAT0002566 | age-miR-218 | 3 | __...... | 8 | 75 |
| MIMAT0002565 | ggo-miR-218 | 3 | __...... | 8 | 75 |
| MIMAT0001869 | dre-miR-218b | 3 | __...... | 8 | 75 |
| MIMAT0001868 | dre-miR-218a | 3 | __...... | 8 | 75 |
| MIMAT0001144 | gga-miR-218-5p | 3 | __...... | 8 | 75 |
| MIMAT0001143 | gga-miR-302a | 3 | __...... | 8 | 75 |
| MIMAT0000888 | rno-miR-218a-5p | 3 | __...... | 8 | 75 |
| MIMAT0000663 | mmu-miR-218-5p | 3 | __...... | 8 | 75 |
| MIMAT0000474 | cbr-miR-49 | 6 | __...... | 1 | 75 |
| MIMAT0000275 | hsa-miR-218-5p | 3 | __...... | 8 | 75 |
| MIMAT0000020 | cel-miR-49-3p | 6 | __...... | 1 | 75 |
