| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | cctgggca | 8 | ||
| MIMAT0019216 | hsa-miR-3187-5p | 1 | ........ | 8 | 100 |
| MIMAT0007508 | gga-miR-1635 | 8 | ........ | 1 | 100 |
| MIMAT0019090 | rlcv-miR-rL1-13-5p | 1 | ........ | 8 | 100 |
| MIMAT0034717 | eca-miR-8908m | 8 | _....... | 2 | 87 |
| MIMAT0032998 | ppc-miR-2237d-3p | 8 | _....... | 2 | 87 |
| MIMAT0032384 | ssa-miR-150-3p | 1 | _....... | 7 | 87 |
| MIMAT0029566 | ipu-miR-7567 | 8 | _....... | 2 | 87 |
| MIMAT0029118 | gga-miR-7482-5p | 1 | ......._ | 7 | 87 |
| MIMAT0028527 | mdo-miR-7276-3p | 7 | ......._ | 1 | 87 |
| MIMAT0027898 | mmu-miR-6998-5p | 1 | _....... | 7 | 87 |
| MIMAT0027710 | mmu-miR-6905-5p | 2 | _....... | 8 | 87 |
| MIMAT0027622 | hsa-miR-6860 | 2 | _....... | 8 | 87 |
| MIMAT0027583 | hsa-miR-6840-3p | 7 | ......._ | 1 | 87 |
| MIMAT0025835 | gga-miR-6563-3p | 2 | _....... | 8 | 87 |
| MIMAT0022357 | mmu-miR-1231-5p | 2 | _....... | 8 | 87 |
| MIMAT0021511 | asu-miR-279a-5p | 1 | _....... | 7 | 87 |
| MIMAT0021120 | hsa-miR-5189-5p | 2 | _....... | 8 | 87 |
| MIMAT0017968 | ssc-miR-4335 | 8 | _....... | 2 | 87 |
| MIMAT0016208 | ppy-miR-1285b | 2 | _....... | 8 | 87 |
| MIMAT0013954 | ssc-miR-1285 | 1 | _....... | 7 | 87 |
| MIMAT0008274 | ptr-miR-612 | 2 | _....... | 8 | 87 |
| MIMAT0008004 | ptr-miR-1285 | 2 | _....... | 8 | 87 |
| MIMAT0006027 | odi-miR-1476-5p | 2 | _....... | 8 | 87 |
| MIMAT0006026 | odi-miR-1475 | 2 | _....... | 8 | 87 |
| MIMAT0005876 | hsa-miR-1285-3p | 2 | _....... | 8 | 87 |
| MIMAT0022939 | hsa-miR-939-3p | 2 | ......._ | 8 | 87 |
| MIMAT0003280 | hsa-miR-612 | 2 | _....... | 8 | 87 |
| MIMAT0034860 | efu-miR-9246a | 8 | .g...... | 1 | 87 |
| MIMAT0031016 | hsa-miR-8089 | 1 | ......g. | 8 | 87 |
| MIMAT0027914 | mmu-miR-7005-5p | 1 | ......g. | 8 | 87 |
| MIMAT0024785 | hbr-miR6167 | 8 | ......t. | 1 | 87 |
| MIMAT0019701 | hsa-miR-4641 | 8 | .a...... | 1 | 87 |
| MIMAT0011834 | bta-miR-2314 | 8 | .a...... | 1 | 87 |
| MIMAT0005775 | ptr-miR-510 | 8 | ......t. | 1 | 87 |
| MIMAT0037209 | ata-miR169a-3p | 1 | __...... | 6 | 75 |
| MIMAT0037147 | ata-miR169b-3p | 1 | __...... | 6 | 75 |
| MIMAT0037143 | ata-miR169j-3p | 1 | __...... | 6 | 75 |
| MIMAT0037023 | ssc-miR-9805-3p | 6 | ......__ | 1 | 75 |
| MIMAT0037022 | ssc-miR-9804-5p | 6 | ......__ | 1 | 75 |
| MIMAT0036146 | chi-miR-331-3p | 3 | ......__ | 8 | 75 |
| MIMAT0035950 | chi-miR-1343 | 3 | ......__ | 8 | 75 |
| MIMAT0035561 | dvi-miR-190-3p | 6 | ......__ | 1 | 75 |
| MIMAT0034884 | efu-miR-9189d | 1 | __...... | 6 | 75 |
| MIMAT0034853 | efu-miR-9237a | 6 | ......__ | 1 | 75 |
| MIMAT0034712 | eca-miR-8908l | 8 | __...... | 3 | 75 |
| MIMAT0034507 | eca-miR-8970 | 2 | ......__ | 7 | 75 |
| MIMAT0034459 | eca-miR-8931 | 1 | ......__ | 6 | 75 |
| MIMAT0034390 | cfa-miR-8886 | 7 | ......__ | 2 | 75 |
| MIMAT0034357 | cfa-miR-1343 | 3 | ......__ | 8 | 75 |
| MIMAT0033230 | ppc-miR-8342-3p | 3 | ......__ | 8 | 75 |
| MIMAT0032891 | ppc-miR-8224-3p | 3 | _......_ | 8 | 75 |
| MIMAT0031766 | hbv-miR-B7-5p | 3 | _......_ | 8 | 75 |
| MIMAT0031754 | bma-miR-5363 | 2 | __...... | 7 | 75 |
| MIMAT0030891 | stu-miR8001a | 2 | ......__ | 7 | 75 |
| MIMAT0030656 | prd-miR-87-5p | 3 | ......__ | 8 | 75 |
| MIMAT0030467 | prd-miR-86-3p | 1 | _......_ | 6 | 75 |
| MIMAT0030426 | hsa-miR-7851-3p | 3 | ......__ | 8 | 75 |
| MIMAT0029676 | cbn-miR-7633 | 7 | __...... | 2 | 75 |
| MIMAT0029010 | oan-miR-7430-5p | 1 | __...... | 6 | 75 |
| MIMAT0031033 | mdo-miR-1544e-5p | 8 | _......_ | 3 | 75 |
| MIMAT0028184 | dev-miR-D12-5p | 3 | ......__ | 8 | 75 |
| MIMAT0026386 | bma-miR-5882b | 1 | __...... | 6 | 75 |
| MIMAT0027968 | mmu-miR-7032-5p | 6 | ......__ | 1 | 75 |
| MIMAT0027882 | mmu-miR-6990-5p | 6 | ......__ | 1 | 75 |
| MIMAT0027790 | mmu-miR-6945-5p | 2 | ......__ | 7 | 75 |
| MIMAT0027728 | mmu-miR-6914-5p | 2 | ......__ | 7 | 75 |
| MIMAT0027708 | mmu-miR-6904-5p | 2 | ......__ | 7 | 75 |
| MIMAT0027604 | hsa-miR-6852-5p | 2 | ......__ | 7 | 75 |
| MIMAT0027482 | hsa-miR-6791-5p | 3 | ......__ | 8 | 75 |
| MIMAT0027467 | hsa-miR-6783-3p | 3 | ......__ | 8 | 75 |
| MIMAT0027428 | hsa-miR-6764-5p | 7 | ......__ | 2 | 75 |
| MIMAT0027386 | hsa-miR-6742-3p | 2 | ......__ | 7 | 75 |
| MIMAT0025856 | hsa-miR-6724-5p | 1 | _......_ | 6 | 75 |
| MIMAT0025852 | hsa-miR-6721-5p | 1 | __...... | 6 | 75 |
| MIMAT0025774 | gga-miR-6672-3p | 1 | __...... | 6 | 75 |
| MIMAT0025733 | gga-miR-6637-3p | 2 | _......_ | 7 | 75 |
| MIMAT0025331 | pde-miR390 | 8 | _......_ | 3 | 75 |
| MIMAT0025143 | mmu-miR-6393 | 7 | __...... | 2 | 75 |
| MIMAT0025106 | mmu-miR-6362 | 2 | __...... | 7 | 75 |
| MIMAT0024257 | ggo-miR-1343 | 3 | ......__ | 8 | 75 |
| MIMAT0023761 | cgr-miR-1343 | 3 | ......__ | 8 | 75 |
| MIMAT0023340 | hco-miR-5896 | 2 | __...... | 7 | 75 |
| MIMAT0023079 | tur-miR-5736b-3p | 8 | __...... | 3 | 75 |
| MIMAT0023057 | tur-miR-5731-3p | 1 | __...... | 6 | 75 |
| MIMAT0021588 | asu-miR-5363-5p | 2 | __...... | 7 | 75 |
| MIMAT0021480 | asu-miR-86-3p | 1 | _......_ | 6 | 75 |
| MIMAT0021239 | mtr-miR5243 | 1 | __...... | 6 | 75 |
| MIMAT0020708 | bdi-miR5166 | 6 | __...... | 1 | 75 |
| MIMAT0020615 | mmu-miR-5107-5p | 1 | __...... | 6 | 75 |
| MIMAT0020596 | ssc-miR-1343 | 3 | ......__ | 8 | 75 |
| MIMAT0020003 | cel-miR-4814-3p | 1 | __...... | 6 | 75 |
| MIMAT0019846 | hsa-miR-4726-3p | 7 | ......__ | 2 | 75 |
| MIMAT0019776 | hsa-miR-1343-3p | 3 | ......__ | 8 | 75 |
| MIMAT0019771 | hsa-miR-4685-5p | 6 | ......__ | 1 | 75 |
| MIMAT0019756 | hsa-miR-4674 | 1 | _......_ | 6 | 75 |
| MIMAT0019657 | pma-miR-4623 | 1 | __...... | 6 | 75 |
| MIMAT0019479 | pma-miR-146-3p | 3 | ......__ | 8 | 75 |
| MIMAT0019309 | oar-miR-134-3p | 2 | _......_ | 7 | 75 |
| MIMAT0019020 | hsa-miR-4486 | 2 | _......_ | 7 | 75 |
| MIMAT0018937 | hsa-miR-378g | 2 | _......_ | 7 | 75 |
| MIMAT0018800 | tca-miR-3862-5p | 1 | __...... | 6 | 75 |
| MIMAT0018124 | pab-miR950-3p | 2 | _......_ | 7 | 75 |
| MIMAT0017974 | ssc-miR-484 | 6 | ......__ | 1 | 75 |
| MIMAT0016919 | hsa-miR-4292 | 3 | ......__ | 8 | 75 |
| MIMAT0017898 | rno-miR-3594-5p | 6 | ......__ | 1 | 75 |
| MIMAT0017885 | rno-miR-702-3p | 6 | __...... | 1 | 75 |
| MIMAT0016243 | ppy-miR-1915 | 7 | ......__ | 2 | 75 |
| MIMAT0015646 | mmu-miR-3474 | 2 | ......__ | 7 | 75 |
| MIMAT0017696 | aly-miR869-3p | 1 | ......__ | 6 | 75 |
| MIMAT0015462 | bmo-miR-3277 | 1 | __...... | 6 | 75 |
| MIMAT0014902 | mmu-miR-3090-3p | 7 | ......__ | 2 | 75 |
| MIMAT0013934 | ssc-miR-361-3p | 8 | ......__ | 3 | 75 |
| MIMAT0012814 | ptr-miR-661 | 3 | ......__ | 8 | 75 |
| MIMAT0012631 | bmo-miR-2751 | 3 | _......_ | 8 | 75 |
| MIMAT0012450 | dsi-miR-190-3p | 6 | ......__ | 1 | 75 |
| MIMAT0012228 | dps-miR-190-3p | 6 | ......__ | 1 | 75 |
| MIMAT0012030 | bta-miR-2450a | 1 | __...... | 6 | 75 |
| MIMAT0012027 | bta-miR-2449 | 1 | __...... | 6 | 75 |
| MIMAT0011965 | bta-miR-2407 | 1 | _......_ | 6 | 75 |
| MIMAT0011840 | bta-miR-1343-3p | 3 | ......__ | 8 | 75 |
| MIMAT0011691 | ppc-miR-2240c | 7 | ......__ | 2 | 75 |
| MIMAT0011689 | ppc-miR-2240b | 7 | ......__ | 2 | 75 |
| MIMAT0011586 | crm-miR-86-3p | 1 | _......_ | 6 | 75 |
| MIMAT0011450 | cel-miR-1832b-3p | 3 | __...... | 8 | 75 |
| MIMAT0010001 | bfl-miR-2073 | 2 | ......__ | 7 | 75 |
| MIMAT0019119 | tca-miR-190-3p | 6 | ......__ | 1 | 75 |
| MIMAT0007892 | hsa-miR-1915-3p | 7 | ......__ | 2 | 75 |
| MIMAT0032034 | cel-miR-1821-5p | 6 | __...... | 1 | 75 |
| MIMAT0006500 | mml-miR-661 | 3 | ......__ | 8 | 75 |
| MIMAT0007447 | gga-miR-1585 | 8 | __...... | 3 | 75 |
| MIMAT0007330 | gga-miR-1453 | 1 | __...... | 6 | 75 |
| MIMAT0007174 | oan-miR-1389-3p | 2 | _......_ | 7 | 75 |
| MIMAT0007028 | oan-miR-1365-5p | 3 | _......_ | 8 | 75 |
| MIMAT0006953 | oan-miR-1356 | 6 | ......__ | 1 | 75 |
| MIMAT0006934 | oan-miR-1349 | 2 | _......_ | 7 | 75 |
| MIMAT0006840 | oan-miR-1338-3p | 3 | _......_ | 8 | 75 |
| MIMAT0005028 | dme-miR-1015-3p | 2 | ......__ | 7 | 75 |
| MIMAT0020848 | dme-miR-190-3p | 6 | ......__ | 1 | 75 |
| MIMAT0004998 | pta-miR390 | 8 | _......_ | 3 | 75 |
| MIMAT0004961 | ppt-miR900-5p | 7 | ......__ | 2 | 75 |
| MIMAT0003492 | mmu-miR-702-3p | 6 | __...... | 1 | 75 |
| MIMAT0003324 | hsa-miR-661 | 3 | ......__ | 8 | 75 |
| MIMAT0017199 | rno-miR-361-3p | 8 | ......__ | 3 | 75 |
| MIMAT0020776 | cel-miR-86-3p | 1 | _......_ | 6 | 75 |
