| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | ccttctgg | 8 | ||
| MIMAT0035714 | mmu-miR-3154 | 7 | ......._ | 1 | 87 |
| MIMAT0031584 | bbe-miR-129b-5p | 2 | ......._ | 8 | 87 |
| MIMAT0028743 | mdo-miR-7365-3p | 7 | _....... | 1 | 87 |
| MIMAT0025796 | gga-miR-6690-5p | 8 | ......._ | 2 | 87 |
| MIMAT0025529 | bta-miR-3154 | 7 | ......._ | 1 | 87 |
| MIMAT0024627 | mml-miR-3154 | 7 | ......._ | 1 | 87 |
| MIMAT0024608 | ptr-miR-3154 | 7 | ......._ | 1 | 87 |
| MIMAT0024402 | ppy-miR-3154 | 7 | ......._ | 1 | 87 |
| MIMAT0020080 | bfl-miR-129b | 2 | ......._ | 8 | 87 |
| MIMAT0017819 | rno-miR-3557-5p | 2 | ......._ | 8 | 87 |
| MIMAT0015028 | hsa-miR-3154 | 7 | ......._ | 1 | 87 |
| MIMAT0007969 | ptr-miR-1237 | 2 | ......._ | 8 | 87 |
| MIMAT0005592 | hsa-miR-1237-3p | 2 | ......._ | 8 | 87 |
| MIMAT0029950 | bta-miR-2285z | 8 | .t...... | 1 | 87 |
| MIMAT0013481 | mtr-miR2670d | 8 | ......t. | 1 | 87 |
| MIMAT0013480 | mtr-miR2670c | 8 | ......t. | 1 | 87 |
| MIMAT0013479 | mtr-miR2670b | 8 | ......t. | 1 | 87 |
| MIMAT0013478 | mtr-miR2670a | 8 | ......t. | 1 | 87 |
| MIMAT0037237 | ata-miR9863b-3p | 8 | ......__ | 3 | 75 |
| MIMAT0037105 | ata-miR9863a-3p | 8 | ......__ | 3 | 75 |
| MIMAT0035920 | chi-miR-1248-5p | 2 | ......__ | 7 | 75 |
| MIMAT0035388 | nve-miR-9429-5p | 2 | ......__ | 7 | 75 |
| MIMAT0034868 | efu-miR-9251 | 6 | __...... | 1 | 75 |
| MIMAT0034819 | efu-miR-9223e | 1 | __...... | 6 | 75 |
| MIMAT0034689 | eca-miR-9138 | 1 | __...... | 6 | 75 |
| MIMAT0034491 | eca-miR-8957 | 3 | ......__ | 8 | 75 |
| MIMAT0034369 | cfa-miR-8872 | 1 | __...... | 6 | 75 |
| MIMAT0034343 | cfa-miR-8848 | 2 | _......_ | 7 | 75 |
| MIMAT0033901 | atr-miR8610.1 | 2 | ......__ | 7 | 75 |
| MIMAT0033050 | ppc-miR-8275-3p | 3 | _......_ | 8 | 75 |
| MIMAT0032837 | cel-miR-8210-5p | 3 | ......__ | 8 | 75 |
| MIMAT0032812 | cel-miR-8199-3p | 8 | ......__ | 3 | 75 |
| MIMAT0031766 | hbv-miR-B7-5p | 1 | __...... | 6 | 75 |
| MIMAT0030714 | prd-miR-35a-5p | 3 | _......_ | 8 | 75 |
| MIMAT0030623 | prd-miR-7905-3p | 8 | ......__ | 3 | 75 |
| MIMAT0029646 | crm-miR-254 | 8 | _......_ | 3 | 75 |
| MIMAT0029310 | hsa-miR-7515 | 6 | ......__ | 1 | 75 |
| MIMAT0028995 | oan-miR-7422a-3p | 2 | _......_ | 7 | 75 |
| MIMAT0028867 | mdo-miR-7386o-3p | 8 | ......__ | 3 | 75 |
| MIMAT0028644 | mdo-miR-7322-5p | 7 | ......__ | 2 | 75 |
| MIMAT0027961 | mmu-miR-7028-3p | 1 | ......__ | 6 | 75 |
| MIMAT0027918 | mmu-miR-7007-5p | 7 | _......_ | 2 | 75 |
| MIMAT0027814 | mmu-miR-6957-5p | 6 | _......_ | 1 | 75 |
| MIMAT0027714 | mmu-miR-6907-5p | 1 | __...... | 6 | 75 |
| MIMAT0027703 | mmu-miR-6901-3p | 3 | ......__ | 8 | 75 |
| MIMAT0027637 | hsa-miR-6868-3p | 3 | ......__ | 8 | 75 |
| MIMAT0027440 | hsa-miR-6770-5p | 8 | ......__ | 3 | 75 |
| MIMAT0027378 | hsa-miR-6738-3p | 1 | _......_ | 6 | 75 |
| MIMAT0025724 | gga-miR-6628-3p | 6 | _......_ | 1 | 75 |
| MIMAT0025603 | gga-miR-6549-5p | 3 | ......__ | 8 | 75 |
| MIMAT0025258 | ptc-miR6439b | 8 | _......_ | 3 | 75 |
| MIMAT0027295 | ppe-miR6270 | 1 | __...... | 6 | 75 |
| MIMAT0024376 | ppy-miR-4782 | 1 | __...... | 6 | 75 |
| MIMAT0024251 | ggo-miR-1252 | 6 | ......__ | 1 | 75 |
| MIMAT0024039 | ptr-miR-1252 | 6 | ......__ | 1 | 75 |
| MIMAT0022500 | hsa-miR-5706 | 1 | __...... | 6 | 75 |
| MIMAT0022374 | mmu-miR-5623-3p | 2 | __...... | 7 | 75 |
| MIMAT0022187 | cel-miR-5548-5p | 2 | ......__ | 7 | 75 |
| MIMAT0022125 | osa-miR5492 | 6 | ......__ | 1 | 75 |
| MIMAT0021548 | asu-miR-5348-5p | 6 | _......_ | 1 | 75 |
| MIMAT0021404 | rmi-miR-5331 | 7 | __...... | 2 | 75 |
| MIMAT0021310 | mtr-miR2629h | 7 | _......_ | 2 | 75 |
| MIMAT0021098 | osa-miR5150-5p | 3 | _......_ | 8 | 75 |
| MIMAT0027041 | hsa-miR-5088-3p | 3 | ......__ | 8 | 75 |
| MIMAT0019944 | hsa-miR-4782-5p | 1 | __...... | 6 | 75 |
| MIMAT0019911 | hsa-miR-4762-3p | 1 | _......_ | 6 | 75 |
| MIMAT0019028 | hsa-miR-4493 | 6 | ......__ | 1 | 75 |
| MIMAT0018339 | gma-miR156g | 7 | _......_ | 2 | 75 |
| MIMAT0018761 | tca-miR-3852-3p | 2 | _......_ | 7 | 75 |
| MIMAT0018131 | pab-miR3699 | 8 | _......_ | 3 | 75 |
| MIMAT0016785 | cin-miR-4176-5p | 7 | __...... | 2 | 75 |
| MIMAT0016769 | cin-miR-4162-3p | 7 | ......__ | 2 | 75 |
| MIMAT0016404 | cin-miR-96-3p | 3 | __...... | 8 | 75 |
| MIMAT0016303 | sja-miR-3494 | 8 | _......_ | 3 | 75 |
| MIMAT0016220 | ppy-miR-1299 | 1 | __...... | 6 | 75 |
| MIMAT0016177 | ppy-miR-1252 | 6 | ......__ | 1 | 75 |
| MIMAT0016173 | ppy-miR-1248 | 2 | ......__ | 7 | 75 |
| MIMAT0016140 | ppy-miR-942 | 1 | ......__ | 6 | 75 |
| MIMAT0015812 | ppy-miR-298 | 8 | _......_ | 3 | 75 |
| MIMAT0017629 | aly-miR844-5p | 6 | ......__ | 1 | 75 |
| MIMAT0017604 | aly-miR824-3p | 1 | ......__ | 6 | 75 |
| MIMAT0015508 | bmo-miR-3321 | 6 | _......_ | 1 | 75 |
| MIMAT0015062 | hsa-miR-3182 | 2 | _......_ | 7 | 75 |
| MIMAT0015056 | hsa-miR-3179 | 6 | ......__ | 1 | 75 |
| MIMAT0014489 | tgu-miR-2979-5p | 7 | __...... | 2 | 75 |
| MIMAT0014446 | cel-miR-2953-5p | 8 | _......_ | 3 | 75 |
| MIMAT0013091 | eca-miR-1248 | 2 | ......__ | 7 | 75 |
| MIMAT0012862 | hvt-miR-H10 | 2 | ......__ | 7 | 75 |
| MIMAT0012322 | dps-miR-2533 | 1 | __...... | 6 | 75 |
| MIMAT0012051 | bta-miR-2464-5p | 2 | _......_ | 7 | 75 |
| MIMAT0011674 | ppc-miR-2248 | 8 | __...... | 3 | 75 |
| MIMAT0011667 | ppc-miR-2252 | 2 | ......__ | 7 | 75 |
| MIMAT0009972 | bta-miR-1248 | 2 | ......__ | 7 | 75 |
| MIMAT0008081 | ptr-miR-298 | 8 | _......_ | 3 | 75 |
| MIMAT0008018 | ptr-miR-1299 | 1 | __...... | 6 | 75 |
| MIMAT0007974 | ptr-miR-1248 | 2 | ......__ | 7 | 75 |
| MIMAT0007868 | mmu-miR-1903 | 1 | ......__ | 6 | 75 |
| MIMAT0006254 | mml-miR-298 | 8 | _......_ | 3 | 75 |
| MIMAT0007721 | gga-miR-1804 | 7 | _......_ | 2 | 75 |
| MIMAT0007708 | gga-miR-1794 | 7 | __...... | 2 | 75 |
| MIMAT0007247 | oan-miR-1419c-5p | 3 | __...... | 8 | 75 |
| MIMAT0005944 | hsa-miR-1252-5p | 6 | ......__ | 1 | 75 |
| MIMAT0005900 | hsa-miR-1248 | 2 | ......__ | 7 | 75 |
| MIMAT0005887 | hsa-miR-1299 | 1 | __...... | 6 | 75 |
| MIMAT0005552 | mcmv-miR-m88-1-3p | 6 | _......_ | 1 | 75 |
| MIMAT0005397 | cre-miR1152 | 8 | ......__ | 3 | 75 |
| MIMAT0005240 | smo-miR1088-5p | 6 | _......_ | 1 | 75 |
| MIMAT0005088 | ppt-miR902l-3p | 6 | ......__ | 1 | 75 |
| MIMAT0005084 | ppt-miR902j-3p | 6 | ......__ | 1 | 75 |
| MIMAT0005080 | ppt-miR902h-3p | 6 | ......__ | 1 | 75 |
| MIMAT0004989 | pta-miR156b | 6 | _......_ | 1 | 75 |
| MIMAT0004988 | pta-miR156a | 6 | _......_ | 1 | 75 |
| MIMAT0004389 | cre-miR907 | 2 | _......_ | 7 | 75 |
| MIMAT0004901 | hsa-miR-298 | 8 | _......_ | 3 | 75 |
| MIMAT0032024 | ath-miR824-3p | 1 | ......__ | 6 | 75 |
| MIMAT0003986 | sme-miR-71b-3p | 2 | ......__ | 7 | 75 |
| MIMAT0026621 | hsa-miR-605-3p | 6 | ......__ | 1 | 75 |
| MIMAT0017168 | rno-miR-320-5p | 2 | ......__ | 7 | 75 |
| MIMAT0017057 | mmu-miR-320-5p | 2 | ......__ | 7 | 75 |
| MIMAT0031891 | cel-miR-254-5p | 8 | _......_ | 3 | 75 |
