| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | cgaaaca | 7 | ||
| MIMAT0022499 | hsa-miR-5705 | 7 | ....... | 1 | 100 |
| MIMAT0036358 | gma-miR9738 | 2 | _...... | 7 | 85 |
| MIMAT0036255 | chi-miR-494 | 2 | _...... | 7 | 85 |
| MIMAT0035974 | chi-miR-147-5p | 3 | _...... | 8 | 85 |
| MIMAT0035028 | efu-miR-494 | 2 | _...... | 7 | 85 |
| MIMAT0033113 | ppc-miR-8298-5p | 6 | _...... | 1 | 85 |
| MIMAT0032362 | ssa-miR-142a-3p | 8 | _...... | 3 | 85 |
| MIMAT0031196 | stu-miR8014-5p | 8 | _...... | 3 | 85 |
| MIMAT0030172 | bdi-miR7723a-5p | 2 | _...... | 7 | 85 |
| MIMAT0029859 | mmu-miR-7675-3p | 6 | _...... | 1 | 85 |
| MIMAT0028165 | hcmv-miR-US22-5p | 6 | _...... | 1 | 85 |
| MIMAT0025713 | gga-miR-6617-3p | 6 | _...... | 1 | 85 |
| MIMAT0024160 | ggo-miR-494 | 2 | _...... | 7 | 85 |
| MIMAT0023658 | ame-miR-6038 | 8 | _...... | 3 | 85 |
| MIMAT0031159 | stu-miR6024-5p | 2 | _...... | 7 | 85 |
| MIMAT0023162 | gma-miR5765 | 1 | ......_ | 6 | 85 |
| MIMAT0021492 | asu-miR-100c-3p | 8 | ......_ | 3 | 85 |
| MIMAT0020055 | sko-miR-4837 | 6 | _...... | 1 | 85 |
| MIMAT0019268 | oar-miR-494-3p | 2 | _...... | 7 | 85 |
| MIMAT0018554 | ame-miR-3777 | 3 | _...... | 8 | 85 |
| MIMAT0016890 | hsa-miR-4261 | 3 | _...... | 8 | 85 |
| MIMAT0016641 | cin-miR-4076-3p | 8 | _...... | 3 | 85 |
| MIMAT0016430 | cin-miR-4000a-5p | 1 | ......_ | 6 | 85 |
| MIMAT0015915 | ppy-miR-494 | 2 | _...... | 7 | 85 |
| MIMAT0017600 | aly-miR822-3p | 1 | _...... | 6 | 85 |
| MIMAT0014946 | mmu-miR-3074-2-3p | 6 | _...... | 1 | 85 |
| MIMAT0014875 | mmu-miR-3083-3p | 3 | ......_ | 8 | 85 |
| MIMAT0013164 | eca-miR-494 | 2 | _...... | 7 | 85 |
| MIMAT0012838 | rno-miR-653-5p | 3 | _...... | 8 | 85 |
| MIMAT0026944 | mdo-miR-33-3p | 8 | _...... | 3 | 85 |
| MIMAT0013717 | bmo-miR-2809 | 1 | _...... | 6 | 85 |
| MIMAT0011831 | bta-miR-2284t-5p | 1 | _...... | 6 | 85 |
| MIMAT0009905 | cfa-miR-494 | 2 | _...... | 7 | 85 |
| MIMAT0009334 | bta-miR-494 | 2 | _...... | 7 | 85 |
| MIMAT0008168 | ptr-miR-494 | 2 | _...... | 7 | 85 |
| MIMAT0006374 | mml-miR-516a-3p | 6 | _...... | 1 | 85 |
| MIMAT0006356 | mml-miR-494-3p | 2 | _...... | 7 | 85 |
| MIMAT0007431 | gga-miR-1571 | 6 | _...... | 1 | 85 |
| MIMAT0007055 | oan-miR-1374 | 6 | _...... | 1 | 85 |
| MIMAT0005205 | ppt-miR1075 | 6 | _...... | 1 | 85 |
| MIMAT0017269 | mmu-miR-147-5p | 3 | _...... | 8 | 85 |
| MIMAT0003791 | bta-miR-142-3p | 8 | _...... | 3 | 85 |
| MIMAT0003193 | rno-miR-494-3p | 2 | _...... | 7 | 85 |
| MIMAT0003182 | mmu-miR-494-3p | 2 | _...... | 7 | 85 |
| MIMAT0002816 | hsa-miR-494-3p | 2 | _...... | 7 | 85 |
| MIMAT0001002 | ath-miR401 | 1 | ......_ | 6 | 85 |
