| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | cgaaagct | 8 | ||
| MIMAT0011620 | crm-miR-80-5p | 8 | ........ | 1 | 100 |
| MIMAT0009759 | nve-miR-2025-5p | 8 | ........ | 1 | 100 |
| MIMAT0000052 | cel-miR-80-5p | 8 | ........ | 1 | 100 |
| MIMAT0035558 | dvi-miR-1017-3p | 1 | _....... | 7 | 87 |
| MIMAT0021069 | gma-miR396f | 7 | _....... | 1 | 87 |
| MIMAT0014911 | mmu-miR-3095-5p | 8 | _....... | 2 | 87 |
| MIMAT0005030 | dme-miR-1017-3p | 1 | _....... | 7 | 87 |
| MIMAT0026727 | mtr-miR319b-5p | 8 | _....... | 2 | 87 |
| MIMAT0004325 | ppt-miR319d-5p.1 | 8 | _....... | 2 | 87 |
| MIMAT0036820 | oha-miR-208-5p | 8 | .a...... | 1 | 87 |
| MIMAT0032875 | ppc-miR-8220-3p | 1 | .t...... | 8 | 87 |
| MIMAT0016598 | cin-miR-4054-3p | 8 | .a...... | 1 | 87 |
| MIMAT0015008 | hsa-miR-3140-3p | 8 | .a...... | 1 | 87 |
| MIMAT0002066 | ptc-miR474c | 1 | .a...... | 8 | 87 |
| MIMAT0036957 | oha-miR-9-4-5p | 7 | ......__ | 2 | 75 |
| MIMAT0036953 | oha-miR-9-1-5p | 6 | ......__ | 1 | 75 |
| MIMAT0036455 | ptr-miR-518g-3p | 1 | _......_ | 6 | 75 |
| MIMAT0036417 | ggo-miR-518f-3p | 1 | _......_ | 6 | 75 |
| MIMAT0036308 | chi-miR-9-3p | 3 | __...... | 8 | 75 |
| MIMAT0036132 | chi-miR-320-3p | 2 | __...... | 7 | 75 |
| MIMAT0035493 | bdi-miR9486a | 8 | _......_ | 3 | 75 |
| MIMAT0035457 | sly-miR167b-5p | 2 | __...... | 7 | 75 |
| MIMAT0035392 | nve-miR-9424b | 2 | __...... | 7 | 75 |
| MIMAT0035190 | efu-miR-320 | 2 | __...... | 7 | 75 |
| MIMAT0035136 | efu-miR-30e | 6 | _......_ | 1 | 75 |
| MIMAT0035115 | efu-miR-22 | 1 | __...... | 6 | 75 |
| MIMAT0034973 | efu-miR-30a | 6 | _......_ | 1 | 75 |
| MIMAT0034938 | efu-miR-9-3p | 3 | __...... | 8 | 75 |
| MIMAT0034859 | efu-miR-9244 | 7 | __...... | 2 | 75 |
| MIMAT0033977 | gra-miR7505b | 8 | __...... | 3 | 75 |
| MIMAT0033933 | atr-miR390.1 | 2 | __...... | 7 | 75 |
| MIMAT0033776 | pxy-miR-9a | 2 | __...... | 7 | 75 |
| MIMAT0033684 | sma-miR-8481-3p | 8 | ......__ | 3 | 75 |
| MIMAT0033438 | str-miR-124-5p | 7 | _......_ | 2 | 75 |
| MIMAT0033381 | str-miR-8372-3p | 3 | __...... | 8 | 75 |
| MIMAT0032981 | ppc-miR-8256-3p | 7 | _......_ | 2 | 75 |
| MIMAT0032929 | ppc-miR-8237-3p | 3 | __...... | 8 | 75 |
| MIMAT0032798 | cel-miR-8192-3p | 1 | ......__ | 6 | 75 |
| MIMAT0032731 | ssa-miR-9b-3p | 2 | __...... | 7 | 75 |
| MIMAT0032729 | ssa-miR-9a-8-3p | 2 | __...... | 7 | 75 |
| MIMAT0032728 | ssa-miR-9a-7-3p | 2 | __...... | 7 | 75 |
| MIMAT0032727 | ssa-miR-9a-6-3p | 2 | __...... | 7 | 75 |
| MIMAT0032726 | ssa-miR-9a-5-3p | 3 | __...... | 8 | 75 |
| MIMAT0032725 | ssa-miR-9a-4-3p | 3 | __...... | 8 | 75 |
| MIMAT0032724 | ssa-miR-9a-3-3p | 2 | __...... | 7 | 75 |
| MIMAT0032723 | ssa-miR-9a-2-3p | 2 | __...... | 7 | 75 |
| MIMAT0032722 | ssa-miR-9a-1-3p | 2 | __...... | 7 | 75 |
| MIMAT0032684 | ssa-miR-736-5p | 8 | _......_ | 3 | 75 |
| MIMAT0032469 | ssa-miR-19d-5p | 6 | __...... | 1 | 75 |
| MIMAT0031727 | bbe-miR-9-3p | 2 | __...... | 7 | 75 |
| MIMAT0031277 | stu-miR319a-5p | 8 | __...... | 3 | 75 |
| MIMAT0030754 | prd-miR-67-5p | 7 | _......_ | 2 | 75 |
| MIMAT0030577 | prd-miR-9b-3p | 3 | __...... | 8 | 75 |
| MIMAT0030501 | prd-miR-9a-3p | 3 | __...... | 8 | 75 |
| MIMAT0029748 | cbn-miR-79 | 3 | __...... | 8 | 75 |
| MIMAT0029747 | cbn-miR-75 | 3 | __...... | 8 | 75 |
| MIMAT0029061 | gga-miR-7453-3p | 7 | __...... | 2 | 75 |
| MIMAT0028728 | mdo-miR-7358-5p | 3 | ......__ | 8 | 75 |
| MIMAT0028612 | mdo-miR-208b-5p | 7 | __...... | 2 | 75 |
| MIMAT0028555 | mdo-miR-9b-3p | 2 | __...... | 7 | 75 |
| MIMAT0028414 | mmu-miR-7223-5p | 7 | __...... | 2 | 75 |
| MIMAT0026322 | ccr-miR-9-5p | 2 | __...... | 7 | 75 |
| MIMAT0025737 | gga-miR-6641-5p | 8 | __...... | 3 | 75 |
| MIMAT0025649 | gga-miR-6571-5p | 3 | __...... | 8 | 75 |
| MIMAT0025421 | pol-miR-9b-3p | 2 | __...... | 7 | 75 |
| MIMAT0025169 | mmu-miR-6415 | 7 | __...... | 2 | 75 |
| MIMAT0025130 | mmu-miR-6384 | 6 | _......_ | 1 | 75 |
| MIMAT0024987 | hme-miR-79 | 2 | __...... | 7 | 75 |
| MIMAT0024476 | mse-miR-9b | 3 | __...... | 8 | 75 |
| MIMAT0024472 | mse-miR-79 | 3 | __...... | 8 | 75 |
| MIMAT0024358 | ppy-miR-320e | 2 | __...... | 7 | 75 |
| MIMAT0024326 | mml-miR-320c | 2 | __...... | 7 | 75 |
| MIMAT0024312 | mml-miR-320b | 2 | __...... | 7 | 75 |
| MIMAT0024248 | ggo-miR-4429 | 2 | __...... | 7 | 75 |
| MIMAT0024080 | ggo-miR-320a | 2 | __...... | 7 | 75 |
| MIMAT0024030 | ptr-miR-320e | 2 | __...... | 7 | 75 |
| MIMAT0023906 | cgr-miR-320a | 2 | __...... | 7 | 75 |
| MIMAT0023582 | tca-miR-9e-3p | 3 | __...... | 8 | 75 |
| MIMAT0023471 | hco-miR-5946c | 8 | __...... | 3 | 75 |
| MIMAT0023326 | hco-miR-79 | 3 | __...... | 8 | 75 |
| MIMAT0022537 | ola-miR-9a-3p | 3 | __...... | 8 | 75 |
| MIMAT0023083 | tur-miR-9-3p | 3 | __...... | 8 | 75 |
| MIMAT0021992 | aca-miR-9-3-3p | 2 | __...... | 7 | 75 |
| MIMAT0021991 | aca-miR-9-1-3p | 3 | __...... | 8 | 75 |
| MIMAT0021859 | aca-miR-208-5p | 7 | __...... | 2 | 75 |
| MIMAT0021585 | asu-miR-5361-3p | 1 | __...... | 6 | 75 |
| MIMAT0021473 | asu-miR-79-3p | 3 | __...... | 8 | 75 |
| MIMAT0021432 | asu-miR-9-3p | 3 | __...... | 8 | 75 |
| MIMAT0020522 | ath-miR5018 | 3 | __...... | 8 | 75 |
| MIMAT0019374 | pma-miR-9a-3p | 2 | __...... | 7 | 75 |
| MIMAT0018944 | hsa-miR-4429 | 2 | __...... | 7 | 75 |
| MIMAT0018262 | gma-miR396d | 3 | _......_ | 8 | 75 |
| MIMAT0018889 | tca-miR-3893-3p | 3 | __...... | 8 | 75 |
| MIMAT0018749 | tca-miR-9d-3p | 3 | __...... | 8 | 75 |
| MIMAT0018733 | tca-miR-3843-3p | 3 | __...... | 8 | 75 |
| MIMAT0018572 | ame-miR-9c | 2 | __...... | 7 | 75 |
| MIMAT0018569 | ame-miR-3790 | 1 | _......_ | 6 | 75 |
| MIMAT0018519 | ame-miR-3750 | 2 | __...... | 7 | 75 |
| MIMAT0018052 | vvi-miR3639-3p | 7 | __...... | 2 | 75 |
| MIMAT0016866 | hsa-miR-4315 | 8 | _......_ | 3 | 75 |
| MIMAT0016684 | cin-miR-4100-5p | 8 | __...... | 3 | 75 |
| MIMAT0017844 | rno-miR-208b-5p | 7 | __...... | 2 | 75 |
| MIMAT0015958 | ppy-miR-518f | 1 | _......_ | 6 | 75 |
| MIMAT0015952 | ppy-miR-518a-3p | 1 | _......_ | 6 | 75 |
| MIMAT0015824 | ppy-miR-320d | 2 | __...... | 7 | 75 |
| MIMAT0015823 | ppy-miR-320c | 2 | __...... | 7 | 75 |
| MIMAT0015822 | ppy-miR-320b | 2 | __...... | 7 | 75 |
| MIMAT0015821 | ppy-miR-320a | 2 | __...... | 7 | 75 |
| MIMAT0017431 | aly-miR319b-5p | 8 | __...... | 3 | 75 |
| MIMAT0015542 | bmo-miR-3356 | 8 | __...... | 3 | 75 |
| MIMAT0015072 | hsa-miR-320e | 1 | __...... | 6 | 75 |
| MIMAT0019212 | hsa-miR-3160-5p | 7 | _......_ | 2 | 75 |
| MIMAT0014922 | mmu-miR-3101-3p | 7 | __...... | 2 | 75 |
| MIMAT0014779 | api-miR-3041 | 3 | __...... | 8 | 75 |
| MIMAT0014627 | tgu-miR-9-3p | 3 | __...... | 8 | 75 |
| MIMAT0014381 | cqu-miR-9-3p | 2 | __...... | 7 | 75 |
| MIMAT0014295 | aae-miR-79-3p | 2 | __...... | 7 | 75 |
| MIMAT0015370 | aae-miR-315-3p | 6 | ......__ | 1 | 75 |
| MIMAT0014213 | aae-miR-9c-3p | 2 | __...... | 7 | 75 |
| MIMAT0014108 | bma-miR-9-3p | 3 | __...... | 8 | 75 |
| MIMAT0013878 | ssc-miR-320 | 2 | __...... | 7 | 75 |
| MIMAT0013620 | bmo-miR-9d | 3 | __...... | 8 | 75 |
| MIMAT0012705 | isc-miR-79 | 3 | __...... | 8 | 75 |
| MIMAT0012668 | dpu-miR-9-3p | 3 | __...... | 8 | 75 |
| MIMAT0013473 | mtr-miR2666 | 1 | ......__ | 6 | 75 |
| MIMAT0013344 | mtr-miR2624 | 1 | ......__ | 6 | 75 |
| MIMAT0012363 | dps-miR-2551-3p | 2 | __...... | 7 | 75 |
| MIMAT0011850 | bta-miR-2322-5p | 3 | _......_ | 8 | 75 |
| MIMAT0011652 | ppc-miR-79 | 3 | __...... | 8 | 75 |
| MIMAT0011556 | crm-miR-79-3p | 3 | __...... | 8 | 75 |
| MIMAT0011521 | crm-miR-75 | 3 | __...... | 8 | 75 |
| MIMAT0011459 | cel-miR-2219-5p | 8 | __...... | 3 | 75 |
| MIMAT0010147 | lmi-miR-9a-3p | 3 | __...... | 8 | 75 |
| MIMAT0010128 | bmo-miR-993b-3p | 1 | __...... | 6 | 75 |
| MIMAT0019177 | tca-miR-9a-3p | 3 | __...... | 8 | 75 |
| MIMAT0010063 | osa-miR2099-3p | 3 | __...... | 8 | 75 |
| MIMAT0009477 | bfl-miR-9-3p | 3 | __...... | 8 | 75 |
| MIMAT0009661 | spu-miR-9-3p | 3 | __...... | 8 | 75 |
| MIMAT0019156 | sko-miR-96-3p | 1 | ......__ | 6 | 75 |
| MIMAT0009618 | sko-miR-9-3p | 3 | __...... | 8 | 75 |
| MIMAT0009572 | lgi-miR-9-3p | 3 | __...... | 8 | 75 |
| MIMAT0009554 | cte-miR-9-3p | 2 | __...... | 7 | 75 |
| MIMAT0012549 | bta-miR-9-3p | 3 | __...... | 8 | 75 |
| MIMAT0009124 | dya-miR-79 | 2 | __...... | 7 | 75 |
| MIMAT0009058 | dya-miR-4 | 3 | __...... | 8 | 75 |
| MIMAT0009049 | dwi-miR-4 | 3 | __...... | 8 | 75 |
| MIMAT0008981 | dwi-miR-79 | 2 | __...... | 7 | 75 |
| MIMAT0008975 | dvi-miR-79-3p | 2 | __...... | 7 | 75 |
| MIMAT0008956 | dvi-miR-4-3p | 3 | __...... | 8 | 75 |
| MIMAT0032057 | dvi-miR-9a-3p | 2 | __...... | 7 | 75 |
| MIMAT0032054 | dvi-miR-9c-3p | 2 | __...... | 7 | 75 |
| MIMAT0008842 | dsi-miR-4 | 3 | __...... | 8 | 75 |
| MIMAT0008835 | dse-miR-4 | 3 | __...... | 8 | 75 |
| MIMAT0008769 | dse-miR-79 | 2 | __...... | 7 | 75 |
| MIMAT0008751 | dpe-miR-4 | 3 | __...... | 8 | 75 |
| MIMAT0008747 | dpe-miR-79 | 2 | __...... | 7 | 75 |
| MIMAT0008690 | dmo-miR-79 | 2 | __...... | 7 | 75 |
| MIMAT0008629 | dmo-miR-4 | 3 | __...... | 8 | 75 |
| MIMAT0008594 | dgr-miR-4 | 3 | __...... | 8 | 75 |
| MIMAT0008583 | dgr-miR-79 | 2 | __...... | 7 | 75 |
| MIMAT0008532 | der-miR-4 | 3 | __...... | 8 | 75 |
| MIMAT0008525 | der-miR-79 | 2 | __...... | 7 | 75 |
| MIMAT0008430 | dan-miR-79 | 2 | __...... | 7 | 75 |
| MIMAT0008427 | dan-miR-4 | 3 | __...... | 8 | 75 |
| MIMAT0019135 | tca-miR-9b-3p | 3 | __...... | 8 | 75 |
| MIMAT0008191 | ptr-miR-518f | 1 | _......_ | 6 | 75 |
| MIMAT0008186 | ptr-miR-518a | 1 | _......_ | 6 | 75 |
| MIMAT0008096 | ptr-miR-320d | 2 | __...... | 7 | 75 |
| MIMAT0008095 | ptr-miR-320c | 2 | __...... | 7 | 75 |
| MIMAT0008094 | ptr-miR-320b | 2 | __...... | 7 | 75 |
| MIMAT0008093 | ptr-miR-320a | 2 | __...... | 7 | 75 |
| MIMAT0006764 | hsa-miR-320d | 2 | __...... | 7 | 75 |
| MIMAT0006658 | cfa-miR-320 | 2 | __...... | 7 | 75 |
| MIMAT0006263 | mml-miR-320a | 2 | __...... | 7 | 75 |
| MIMAT0026845 | mml-miR-208b-5p | 7 | __...... | 2 | 75 |
| MIMAT0026844 | mml-miR-208a-5p | 7 | __...... | 2 | 75 |
| MIMAT0026796 | mml-miR-9-3p | 3 | __...... | 8 | 75 |
| MIMAT0007340 | gga-miR-1462-5p | 8 | _......_ | 3 | 75 |
| MIMAT0006920 | oan-miR-208-5p | 7 | __...... | 2 | 75 |
| MIMAT0006793 | oan-miR-9-3p | 2 | __...... | 7 | 75 |
| MIMAT0005564 | xtr-miR-320 | 2 | __...... | 7 | 75 |
| MIMAT0005333 | rno-miR-742-3p | 1 | _......_ | 6 | 75 |
| MIMAT0005243 | smo-miR1090 | 2 | _......_ | 7 | 75 |
| MIMAT0004433 | ame-miR-79 | 2 | __...... | 7 | 75 |
| MIMAT0026722 | hsa-miR-208b-5p | 7 | __...... | 2 | 75 |
| MIMAT0017280 | mmu-miR-208b-5p | 7 | __...... | 2 | 75 |
| MIMAT0004088 | mdo-miR-9a-3p | 3 | __...... | 8 | 75 |
| MIMAT0004237 | mmu-miR-742-3p | 1 | _......_ | 6 | 75 |
| MIMAT0003988 | sme-miR-79-3p | 3 | __...... | 8 | 75 |
| MIMAT0015225 | bmo-miR-9a-3p | 3 | __...... | 8 | 75 |
| MIMAT0003650 | xtr-miR-9-3p | 2 | __...... | 7 | 75 |
| MIMAT0003556 | xtr-miR-9b-3p | 2 | __...... | 7 | 75 |
| MIMAT0003554 | xtr-miR-9a-3p | 2 | __...... | 7 | 75 |
| MIMAT0003534 | bta-miR-320a | 2 | __...... | 7 | 75 |
| MIMAT0004189 | mmu-miR-693-3p | 8 | __...... | 3 | 75 |
| MIMAT0005793 | hsa-miR-320c | 2 | __...... | 7 | 75 |
| MIMAT0005792 | hsa-miR-320b | 2 | __...... | 7 | 75 |
| MIMAT0003350 | gga-miR-9-3p | 2 | __...... | 7 | 75 |
| MIMAT0022927 | osa-miR535-3p | 8 | _......_ | 3 | 75 |
| MIMAT0002863 | hsa-miR-518a-3p | 1 | _......_ | 6 | 75 |
| MIMAT0002842 | hsa-miR-518f-3p | 1 | _......_ | 6 | 75 |
| MIMAT0031941 | dre-miR-19d-5p | 6 | __...... | 1 | 75 |
| MIMAT0031933 | dre-miR-9-7-3p | 2 | __...... | 7 | 75 |
| MIMAT0031932 | dre-miR-9-4-3p | 2 | __...... | 7 | 75 |
| MIMAT0003156 | dre-miR-9-3p | 2 | __...... | 7 | 75 |
| MIMAT0026553 | hcmv-miR-US5-2-5p | 6 | ......__ | 1 | 75 |
| MIMAT0001524 | aga-miR-79 | 2 | __...... | 7 | 75 |
| MIMAT0001224 | dps-miR-79 | 2 | __...... | 7 | 75 |
| MIMAT0001204 | dps-miR-4 | 3 | __...... | 8 | 75 |
| MIMAT0000903 | rno-miR-320-3p | 2 | __...... | 7 | 75 |
| MIMAT0017155 | rno-miR-208a-5p | 7 | __...... | 2 | 75 |
| MIMAT0004708 | rno-miR-9a-3p | 3 | __...... | 8 | 75 |
| MIMAT0000666 | mmu-miR-320-3p | 2 | __...... | 7 | 75 |
| MIMAT0017014 | mmu-miR-208a-5p | 7 | __...... | 2 | 75 |
| MIMAT0000510 | hsa-miR-320a | 2 | __...... | 7 | 75 |
| MIMAT0000486 | cbr-miR-79 | 3 | __...... | 8 | 75 |
| MIMAT0000484 | cbr-miR-75 | 3 | __...... | 8 | 75 |
| MIMAT0000442 | hsa-miR-9-3p | 3 | __...... | 8 | 75 |
| MIMAT0020841 | dme-miR-315-3p | 6 | ......__ | 1 | 75 |
| MIMAT0020828 | dme-miR-9c-3p | 2 | __...... | 7 | 75 |
| MIMAT0000352 | dme-miR-79-3p | 2 | __...... | 7 | 75 |
| MIMAT0000316 | cel-miR-261 | 7 | __...... | 2 | 75 |
| MIMAT0026474 | hsa-miR-208a-5p | 7 | __...... | 2 | 75 |
| MIMAT0000143 | mmu-miR-9-3p | 3 | __...... | 8 | 75 |
| MIMAT0020792 | dme-miR-9a-3p | 2 | __...... | 7 | 75 |
| MIMAT0000109 | dme-miR-4-3p | 3 | __...... | 8 | 75 |
| MIMAT0020326 | cel-miR-90-5p | 8 | _......_ | 3 | 75 |
| MIMAT0000051 | cel-miR-79-3p | 3 | __...... | 8 | 75 |
| MIMAT0000047 | cel-miR-75-3p | 3 | __...... | 8 | 75 |
