| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | cgactgg | 7 | ||
| MIMAT0035477 | sly-miR9479-5p | 7 | _...... | 2 | 85 |
| MIMAT0035425 | nve-miR-9466 | 6 | ......_ | 1 | 85 |
| MIMAT0035125 | efu-miR-9350 | 6 | _...... | 1 | 85 |
| MIMAT0034769 | efu-miR-9189e | 2 | _...... | 7 | 85 |
| MIMAT0034594 | eca-miR-9050 | 3 | ......_ | 8 | 85 |
| MIMAT0034440 | eca-miR-8912 | 8 | _...... | 3 | 85 |
| MIMAT0034320 | cfa-miR-8828 | 3 | ......_ | 8 | 85 |
| MIMAT0033555 | sma-miR-8425-3p | 3 | _...... | 8 | 85 |
| MIMAT0033319 | str-miR-7880e-5p | 3 | _...... | 8 | 85 |
| MIMAT0031845 | cpa-miR8148 | 2 | _...... | 7 | 85 |
| MIMAT0030537 | prd-miR-7940c-3p | 2 | _...... | 7 | 85 |
| MIMAT0028665 | mdo-miR-873-3p | 2 | _...... | 7 | 85 |
| MIMAT0027822 | mmu-miR-6961-5p | 2 | _...... | 7 | 85 |
| MIMAT0025793 | gga-miR-6687-3p | 3 | ......_ | 8 | 85 |
| MIMAT0025288 | hbr-miR408a | 3 | _...... | 8 | 85 |
| MIMAT0024802 | hvu-miR6179 | 8 | _...... | 3 | 85 |
| MIMAT0024386 | ppy-miR-4667 | 2 | _...... | 7 | 85 |
| MIMAT0024384 | ppy-miR-4515 | 3 | _...... | 8 | 85 |
| MIMAT0022746 | xtr-miR-449b-3p | 6 | ......_ | 1 | 85 |
| MIMAT0019663 | pma-miR-4629 | 2 | _...... | 7 | 85 |
| MIMAT0019052 | hsa-miR-4515 | 3 | _...... | 8 | 85 |
| MIMAT0018987 | hsa-miR-4463 | 3 | _...... | 8 | 85 |
| MIMAT0018249 | gma-miR4357 | 6 | ......_ | 1 | 85 |
| MIMAT0018074 | hsa-miR-3654 | 1 | _...... | 6 | 85 |
| MIMAT0016239 | ppy-miR-1910 | 6 | _...... | 1 | 85 |
| MIMAT0014870 | mmu-miR-3081-5p | 1 | _...... | 6 | 85 |
| MIMAT0014763 | api-miR-3027 | 6 | _...... | 1 | 85 |
| MIMAT0019194 | rlcv-miR-rL1-29-5p | 6 | _...... | 1 | 85 |
| MIMAT0013549 | cte-miR-2692 | 6 | _...... | 1 | 85 |
| MIMAT0011554 | crm-miR-237-3p | 6 | ......_ | 1 | 85 |
| MIMAT0007884 | hsa-miR-1910-5p | 6 | _...... | 1 | 85 |
| MIMAT0007866 | mmu-miR-1905 | 8 | _...... | 3 | 85 |
| MIMAT0007273 | oan-miR-873-3p | 3 | _...... | 8 | 85 |
| MIMAT0017289 | rno-miR-871-3p | 2 | _...... | 7 | 85 |
| MIMAT0004455 | mdv2-miR-M16-5p | 8 | _...... | 3 | 85 |
| MIMAT0017265 | mmu-miR-871-3p | 2 | _...... | 7 | 85 |
| MIMAT0012089 | sme-lin-4-3p | 8 | ......_ | 3 | 85 |
| MIMAT0015108 | cel-miR-75-5p | 6 | ......_ | 1 | 85 |
