| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | cgagcact | 8 | ||
| MIMAT0007320 | oan-miR-1419f-5p | 8 | ........ | 1 | 100 |
| MIMAT0037028 | ssc-miR-9810-3p | 1 | ......._ | 7 | 87 |
| MIMAT0030330 | bdi-miR7787-5p | 7 | ......._ | 1 | 87 |
| MIMAT0029049 | gga-miR-7447-3p | 2 | _....... | 8 | 87 |
| MIMAT0019173 | bfl-miR-2072-3p | 2 | _....... | 8 | 87 |
| MIMAT0032747 | ssa-miR-8160-3p | 1 | .c...... | 8 | 87 |
| MIMAT0007240 | oan-miR-1419b-5p | 8 | .c...... | 1 | 87 |
| MIMAT0037067 | ssc-miR-9848-3p | 6 | ......__ | 1 | 75 |
| MIMAT0036805 | oha-miR-20b-5p | 8 | __...... | 3 | 75 |
| MIMAT0036418 | ggo-miR-519b | 7 | __...... | 2 | 75 |
| MIMAT0036409 | ggo-miR-520f | 7 | __...... | 2 | 75 |
| MIMAT0036329 | ocu-miR-520e | 8 | __...... | 3 | 75 |
| MIMAT0036326 | ocu-miR-294-3p | 8 | __...... | 3 | 75 |
| MIMAT0036323 | ocu-miR-302d-3p | 8 | __...... | 3 | 75 |
| MIMAT0036321 | ocu-miR-302a-3p | 8 | __...... | 3 | 75 |
| MIMAT0036319 | ocu-miR-302c-3p | 8 | __...... | 3 | 75 |
| MIMAT0036317 | ocu-miR-302b-3p | 8 | __...... | 3 | 75 |
| MIMAT0035528 | bdi-miR531 | 8 | ......__ | 3 | 75 |
| MIMAT0034930 | efu-miR-9282 | 8 | _......_ | 3 | 75 |
| MIMAT0034895 | efu-miR-9265 | 2 | _......_ | 7 | 75 |
| MIMAT0034886 | efu-miR-9189c | 7 | _......_ | 2 | 75 |
| MIMAT0034639 | eca-miR-372 | 8 | __...... | 3 | 75 |
| MIMAT0034605 | eca-miR-9060 | 2 | _......_ | 7 | 75 |
| MIMAT0034603 | eca-miR-3548 | 2 | __...... | 7 | 75 |
| MIMAT0034153 | gra-miR8741 | 2 | __...... | 7 | 75 |
| MIMAT0032807 | cel-miR-8197-5p | 6 | __...... | 1 | 75 |
| MIMAT0032636 | ssa-miR-430c-3p | 8 | __...... | 3 | 75 |
| MIMAT0032634 | ssa-miR-430b-3p | 8 | __...... | 3 | 75 |
| MIMAT0032632 | ssa-miR-430a-3p | 8 | __...... | 3 | 75 |
| MIMAT0031641 | bbe-miR-2072-3p | 3 | _......_ | 8 | 75 |
| MIMAT0030679 | prd-miR-7919-3p | 2 | __...... | 7 | 75 |
| MIMAT0030442 | bta-miR-7862 | 8 | _......_ | 3 | 75 |
| MIMAT0030363 | hhi-miR-430b | 8 | __...... | 3 | 75 |
| MIMAT0030341 | hhi-miR-430a | 8 | __...... | 3 | 75 |
| MIMAT0030301 | bdi-miR7775-3p | 8 | __...... | 3 | 75 |
| MIMAT0030188 | bdi-miR7728-5p | 6 | ......__ | 1 | 75 |
| MIMAT0032227 | lva-miR-2006-3p | 1 | _......_ | 6 | 75 |
| MIMAT0032180 | pmi-miR-2006-3p | 1 | _......_ | 6 | 75 |
| MIMAT0029899 | mmu-miR-7686-3p | 7 | ......__ | 2 | 75 |
| MIMAT0028837 | mdo-miR-7386b-3p | 3 | _......_ | 8 | 75 |
| MIMAT0028590 | mdo-miR-7299-5p | 7 | __...... | 2 | 75 |
| MIMAT0028346 | mml-miR-7193-5p | 7 | __...... | 2 | 75 |
| MIMAT0026298 | ccr-miR-430 | 8 | __...... | 3 | 75 |
| MIMAT0027833 | mmu-miR-3547-3p | 2 | _......_ | 7 | 75 |
| MIMAT0025755 | gga-miR-6654-3p | 3 | __...... | 8 | 75 |
| MIMAT0025703 | gga-miR-6608-3p | 1 | __...... | 6 | 75 |
| MIMAT0025498 | han-miR160a | 6 | ......__ | 1 | 75 |
| MIMAT0025100 | mmu-miR-6357 | 2 | __...... | 7 | 75 |
| MIMAT0025088 | mmu-miR-6345 | 2 | __...... | 7 | 75 |
| MIMAT0027269 | pgi-miR6143b-3p | 2 | __...... | 7 | 75 |
| MIMAT0022040 | aca-miR-5420 | 8 | __...... | 3 | 75 |
| MIMAT0022010 | aca-miR-5400 | 3 | __...... | 8 | 75 |
| MIMAT0021919 | aca-miR-302b | 8 | __...... | 3 | 75 |
| MIMAT0020514 | dme-miR-4908-3p | 8 | _......_ | 3 | 75 |
| MIMAT0020512 | dme-miR-4918-5p | 3 | _......_ | 8 | 75 |
| MIMAT0019552 | pma-miR-430e | 8 | __...... | 3 | 75 |
| MIMAT0019551 | pma-miR-430d | 8 | __...... | 3 | 75 |
| MIMAT0019550 | pma-miR-430c | 8 | __...... | 3 | 75 |
| MIMAT0019548 | pma-miR-430a | 8 | __...... | 3 | 75 |
| MIMAT0019541 | pma-miR-430f | 8 | __...... | 3 | 75 |
| MIMAT0019538 | pma-miR-302 | 8 | __...... | 3 | 75 |
| MIMAT0019520 | pma-miR-208-5p | 6 | _......_ | 1 | 75 |
| MIMAT0019000 | hsa-miR-4473 | 8 | __...... | 3 | 75 |
| MIMAT0018179 | hsa-miR-3907 | 8 | _......_ | 3 | 75 |
| MIMAT0018792 | tca-miR-3860-5p | 2 | __...... | 7 | 75 |
| MIMAT0018604 | ame-miR-3735 | 2 | ......__ | 7 | 75 |
| MIMAT0018085 | hsa-miR-3663-3p | 2 | _......_ | 7 | 75 |
| MIMAT0016674 | cin-miR-4094-5p | 6 | _......_ | 1 | 75 |
| MIMAT0016555 | cin-miR-4033-5p | 2 | _......_ | 7 | 75 |
| MIMAT0016415 | cin-miR-367-5p | 6 | __...... | 1 | 75 |
| MIMAT0017806 | rno-miR-3548 | 2 | __...... | 7 | 75 |
| MIMAT0017802 | rno-miR-3547 | 2 | _......_ | 7 | 75 |
| MIMAT0015974 | ppy-miR-520f | 7 | __...... | 2 | 75 |
| MIMAT0015973 | ppy-miR-520e | 8 | __...... | 3 | 75 |
| MIMAT0015972 | ppy-miR-520d-3p | 8 | __...... | 3 | 75 |
| MIMAT0015970 | ppy-miR-520c-3p | 8 | __...... | 3 | 75 |
| MIMAT0015968 | ppy-miR-520b | 8 | __...... | 3 | 75 |
| MIMAT0015967 | ppy-miR-520a-3p | 8 | __...... | 3 | 75 |
| MIMAT0015937 | ppy-miR-512-3p | 7 | __...... | 2 | 75 |
| MIMAT0015861 | ppy-miR-373 | 8 | __...... | 3 | 75 |
| MIMAT0015860 | ppy-miR-372 | 8 | __...... | 3 | 75 |
| MIMAT0015819 | ppy-miR-302d | 8 | __...... | 3 | 75 |
| MIMAT0015818 | ppy-miR-302c | 8 | __...... | 3 | 75 |
| MIMAT0015817 | ppy-miR-302b | 8 | __...... | 3 | 75 |
| MIMAT0017703 | aly-miR3436-5p | 1 | ......__ | 6 | 75 |
| MIMAT0014936 | mmu-miR-3102-3p | 1 | _......_ | 6 | 75 |
| MIMAT0014490 | tgu-miR-2980 | 3 | __...... | 8 | 75 |
| MIMAT0014230 | aae-miR-306-3p | 3 | _......_ | 8 | 75 |
| MIMAT0015315 | zma-miR159k-5p | 6 | _......_ | 1 | 75 |
| MIMAT0015314 | zma-miR159j-5p | 6 | _......_ | 1 | 75 |
| MIMAT0015313 | zma-miR159i-5p | 6 | _......_ | 1 | 75 |
| MIMAT0015312 | zma-miR159h-5p | 6 | _......_ | 1 | 75 |
| MIMAT0015311 | zma-miR159g-5p | 6 | _......_ | 1 | 75 |
| MIMAT0013807 | ola-miR-430d | 8 | __...... | 3 | 75 |
| MIMAT0013806 | ola-miR-430b | 8 | __...... | 3 | 75 |
| MIMAT0013805 | ola-miR-430c | 8 | __...... | 3 | 75 |
| MIMAT0013804 | ola-miR-430a | 8 | __...... | 3 | 75 |
| MIMAT0013243 | eca-miR-764-5p | 7 | _......_ | 2 | 75 |
| MIMAT0012914 | eca-miR-302d | 8 | __...... | 3 | 75 |
| MIMAT0012913 | eca-miR-302c | 8 | __...... | 3 | 75 |
| MIMAT0012912 | eca-miR-302b | 8 | __...... | 3 | 75 |
| MIMAT0012911 | eca-miR-302a | 8 | __...... | 3 | 75 |
| MIMAT0012854 | rno-miR-764-5p | 7 | _......_ | 2 | 75 |
| MIMAT0017366 | rno-miR-295-3p | 7 | __...... | 2 | 75 |
| MIMAT0012825 | rno-miR-105 | 8 | __...... | 3 | 75 |
| MIMAT0012818 | ptr-miR-764 | 7 | _......_ | 2 | 75 |
| MIMAT0012794 | mml-miR-764 | 7 | _......_ | 2 | 75 |
| MIMAT0013601 | bmo-miR-11-5p | 2 | __...... | 7 | 75 |
| MIMAT0012301 | dps-miR-2518 | 2 | ......__ | 7 | 75 |
| MIMAT0009948 | bta-miR-764 | 7 | _......_ | 2 | 75 |
| MIMAT0009937 | cfa-miR-764 | 7 | _......_ | 2 | 75 |
| MIMAT0009747 | spu-miR-2006 | 1 | _......_ | 6 | 75 |
| MIMAT0009615 | sko-miR-33-3p | 7 | __...... | 2 | 75 |
| MIMAT0009433 | mmu-miR-1960 | 8 | __...... | 3 | 75 |
| MIMAT0009281 | bta-miR-302c | 8 | __...... | 3 | 75 |
| MIMAT0009280 | bta-miR-302b | 8 | __...... | 3 | 75 |
| MIMAT0009279 | bta-miR-302d | 8 | __...... | 3 | 75 |
| MIMAT0009278 | bta-miR-302a | 7 | __...... | 2 | 75 |
| MIMAT0008202 | ptr-miR-520f | 7 | __...... | 2 | 75 |
| MIMAT0008201 | ptr-miR-520e | 8 | __...... | 3 | 75 |
| MIMAT0008200 | ptr-miR-520d | 8 | __...... | 3 | 75 |
| MIMAT0008198 | ptr-miR-520b | 8 | __...... | 3 | 75 |
| MIMAT0008197 | ptr-miR-520a | 8 | __...... | 3 | 75 |
| MIMAT0008180 | ptr-miR-512 | 7 | __...... | 2 | 75 |
| MIMAT0008122 | ptr-miR-372 | 8 | __...... | 3 | 75 |
| MIMAT0008090 | ptr-miR-302e | 8 | __...... | 3 | 75 |
| MIMAT0008089 | ptr-miR-302d | 8 | __...... | 3 | 75 |
| MIMAT0008088 | ptr-miR-302c | 8 | __...... | 3 | 75 |
| MIMAT0008087 | ptr-miR-302b | 8 | __...... | 3 | 75 |
| MIMAT0008086 | ptr-miR-302a | 8 | __...... | 3 | 75 |
| MIMAT0007777 | osa-miR1855 | 1 | __...... | 6 | 75 |
| MIMAT0006749 | cfa-miR-106a | 8 | __...... | 3 | 75 |
| MIMAT0006388 | mml-miR-520a-3p | 8 | __...... | 3 | 75 |
| MIMAT0006384 | mml-miR-519a-3p | 8 | __...... | 3 | 75 |
| MIMAT0006378 | mml-miR-518a-3p | 8 | __...... | 3 | 75 |
| MIMAT0006372 | mml-miR-512-3p | 7 | __...... | 2 | 75 |
| MIMAT0006299 | mml-miR-373 | 8 | __...... | 3 | 75 |
| MIMAT0006298 | mml-miR-372-3p | 8 | __...... | 3 | 75 |
| MIMAT0006262 | mml-miR-302d | 8 | __...... | 3 | 75 |
| MIMAT0006261 | mml-miR-302c | 8 | __...... | 3 | 75 |
| MIMAT0006260 | mml-miR-302b | 8 | __...... | 3 | 75 |
| MIMAT0006259 | mml-miR-302a-3p | 8 | __...... | 3 | 75 |
| MIMAT0007640 | gga-miR-1737 | 2 | __...... | 7 | 75 |
| MIMAT0007587 | gga-miR-1695 | 1 | _......_ | 6 | 75 |
| MIMAT0007253 | oan-miR-1419d-5p | 8 | __...... | 3 | 75 |
| MIMAT0007195 | oan-miR-302-3p | 8 | __...... | 3 | 75 |
| MIMAT0007110 | oan-miR-1378 | 8 | __...... | 3 | 75 |
| MIMAT0006926 | oan-miR-1420c-3p | 8 | __...... | 3 | 75 |
| MIMAT0006923 | oan-miR-1420a-3p | 8 | __...... | 3 | 75 |
| MIMAT0005931 | hsa-miR-302e | 8 | __...... | 3 | 75 |
| MIMAT0005556 | mcmv-miR-m107-1-3p | 6 | ......__ | 1 | 75 |
| MIMAT0005399 | cre-miR1153-5p.2 | 6 | __...... | 1 | 75 |
| MIMAT0005241 | smo-miR1088-3p | 8 | _......_ | 3 | 75 |
| MIMAT0005158 | ppt-miR1045 | 7 | __...... | 2 | 75 |
| MIMAT0004464 | mdv2-miR-M21-3p | 1 | _......_ | 6 | 75 |
| MIMAT0004183 | mdo-miR-302d | 8 | __...... | 3 | 75 |
| MIMAT0004182 | mdo-miR-302a | 8 | __...... | 3 | 75 |
| MIMAT0004181 | mdo-miR-302c | 8 | __...... | 3 | 75 |
| MIMAT0004180 | mdo-miR-302b | 8 | __...... | 3 | 75 |
| MIMAT0004178 | mdo-miR-93-5p | 8 | __...... | 3 | 75 |
| MIMAT0003709 | xtr-miR-428a | 8 | __...... | 3 | 75 |
| MIMAT0003660 | xtr-miR-93b | 7 | __...... | 2 | 75 |
| MIMAT0003659 | xtr-miR-93a | 8 | __...... | 3 | 75 |
| MIMAT0003636 | xtr-miR-302 | 8 | __...... | 3 | 75 |
| MIMAT0003894 | mmu-miR-764-5p | 7 | _......_ | 2 | 75 |
| MIMAT0003377 | mmu-miR-302d-3p | 8 | __...... | 3 | 75 |
| MIMAT0003376 | mmu-miR-302c-3p | 7 | __...... | 2 | 75 |
| MIMAT0003374 | mmu-miR-302b-3p | 8 | __...... | 3 | 75 |
| MIMAT0003360 | gga-miR-302d | 8 | __...... | 3 | 75 |
| MIMAT0003359 | gga-miR-302c-3p | 8 | __...... | 3 | 75 |
| MIMAT0003357 | gga-miR-302b-3p | 8 | __...... | 3 | 75 |
| MIMAT0002856 | hsa-miR-520d-3p | 8 | __...... | 3 | 75 |
| MIMAT0002846 | hsa-miR-520c-3p | 8 | __...... | 3 | 75 |
| MIMAT0002843 | hsa-miR-520b | 8 | __...... | 3 | 75 |
| MIMAT0002834 | hsa-miR-520a-3p | 8 | __...... | 3 | 75 |
| MIMAT0002830 | hsa-miR-520f-3p | 7 | __...... | 2 | 75 |
| MIMAT0002825 | hsa-miR-520e | 8 | __...... | 3 | 75 |
| MIMAT0002823 | hsa-miR-512-3p | 7 | __...... | 2 | 75 |
| MIMAT0002781 | mne-miR-93 | 8 | __...... | 3 | 75 |
| MIMAT0002778 | lla-miR-93 | 8 | __...... | 3 | 75 |
| MIMAT0002776 | sla-miR-93 | 8 | __...... | 3 | 75 |
| MIMAT0002773 | mml-miR-93-5p | 8 | __...... | 3 | 75 |
| MIMAT0002770 | ptr-miR-93 | 8 | __...... | 3 | 75 |
| MIMAT0002767 | ppy-miR-93 | 8 | __...... | 3 | 75 |
| MIMAT0002764 | ppa-miR-93 | 8 | __...... | 3 | 75 |
| MIMAT0002762 | age-miR-93 | 8 | __...... | 3 | 75 |
| MIMAT0002759 | ggo-miR-93 | 8 | __...... | 3 | 75 |
| MIMAT0022906 | ptc-miR172h-5p | 2 | _......_ | 7 | 75 |
| MIMAT0001880 | dre-miR-430i-3p | 8 | __...... | 3 | 75 |
| MIMAT0015177 | zma-miR159b-5p | 6 | _......_ | 1 | 75 |
| MIMAT0001572 | mghv-miR-M1-8-5p | 1 | __...... | 6 | 75 |
| MIMAT0001425 | dre-miR-430c-3p | 8 | __...... | 3 | 75 |
| MIMAT0001424 | dre-miR-430b-3p | 8 | __...... | 3 | 75 |
| MIMAT0001423 | dre-miR-430a-3p | 8 | __...... | 3 | 75 |
| MIMAT0001345 | xla-miR-428 | 8 | __...... | 3 | 75 |
| MIMAT0001344 | xla-miR-427 | 8 | __...... | 3 | 75 |
| MIMAT0001143 | gga-miR-302a | 7 | __...... | 2 | 75 |
| MIMAT0000895 | rno-miR-291a-3p | 8 | __...... | 3 | 75 |
| MIMAT0026485 | hsa-miR-383-3p | 3 | __...... | 8 | 75 |
| MIMAT0000726 | hsa-miR-373-3p | 8 | __...... | 3 | 75 |
| MIMAT0000724 | hsa-miR-372-3p | 8 | __...... | 3 | 75 |
| MIMAT0000718 | hsa-miR-302d-3p | 8 | __...... | 3 | 75 |
| MIMAT0000717 | hsa-miR-302c-3p | 8 | __...... | 3 | 75 |
| MIMAT0000715 | hsa-miR-302b-3p | 8 | __...... | 3 | 75 |
| MIMAT0000684 | hsa-miR-302a-3p | 8 | __...... | 3 | 75 |
| MIMAT0000380 | mmu-miR-302a-3p | 8 | __...... | 3 | 75 |
| MIMAT0000373 | mmu-miR-295-3p | 8 | __...... | 3 | 75 |
| MIMAT0000372 | mmu-miR-294-3p | 8 | __...... | 3 | 75 |
| MIMAT0000368 | mmu-miR-291a-3p | 8 | __...... | 3 | 75 |
