| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | cgaggaac | 8 | ||
| MIMAT0005537 | mcmv-miR-m01-3-3p | 1 | ........ | 8 | 100 |
| MIMAT0035850 | bra-miR395a-5p | 7 | _....... | 1 | 87 |
| MIMAT0035848 | bra-miR395c-5p | 7 | _....... | 1 | 87 |
| MIMAT0035846 | bra-miR395b-5p | 7 | _....... | 1 | 87 |
| MIMAT0035844 | bra-miR395d-5p | 7 | _....... | 1 | 87 |
| MIMAT0028546 | mdo-miR-7285-5p | 2 | _....... | 8 | 87 |
| MIMAT0024815 | hvu-miR6190 | 1 | ......._ | 7 | 87 |
| MIMAT0024810 | hvu-miR6186 | 1 | ......._ | 7 | 87 |
| MIMAT0023882 | cgr-miR-298-3p | 1 | _....... | 7 | 87 |
| MIMAT0021351 | mtr-miR5289b | 1 | ......._ | 7 | 87 |
| MIMAT0021350 | mtr-miR5289a | 1 | ......._ | 7 | 87 |
| MIMAT0018205 | hsa-miR-3928-3p | 2 | _....... | 8 | 87 |
| MIMAT0018718 | tca-miR-2944a-5p | 1 | _....... | 7 | 87 |
| MIMAT0016888 | hsa-miR-4326 | 8 | _....... | 2 | 87 |
| MIMAT0017665 | aly-miR395g-5p | 7 | _....... | 1 | 87 |
| MIMAT0017553 | aly-miR395e-5p | 7 | _....... | 1 | 87 |
| MIMAT0006063 | odi-miR-1503 | 1 | ......._ | 7 | 87 |
| MIMAT0005593 | hsa-miR-1238-3p | 8 | ......._ | 2 | 87 |
| MIMAT0017007 | mmu-miR-298-3p | 1 | _....... | 7 | 87 |
| MIMAT0028409 | mmu-miR-7220-3p | 1 | .c...... | 8 | 87 |
| MIMAT0027080 | bdi-miR5172-5p | 1 | ......g. | 8 | 87 |
| MIMAT0016622 | cin-miR-4067-5p | 1 | .a...... | 8 | 87 |
| MIMAT0037116 | ata-miR395e-5p | 6 | __...... | 1 | 75 |
| MIMAT0035981 | chi-miR-151-5p | 2 | ......__ | 7 | 75 |
| MIMAT0035348 | gsa-miR-9394b-5p | 2 | _......_ | 7 | 75 |
| MIMAT0034681 | eca-miR-9130 | 7 | _......_ | 2 | 75 |
| MIMAT0034476 | eca-miR-8947 | 1 | ......__ | 6 | 75 |
| MIMAT0034441 | eca-miR-8913 | 6 | _......_ | 1 | 75 |
| MIMAT0034295 | cfa-miR-8805 | 2 | _......_ | 7 | 75 |
| MIMAT0034281 | cfa-miR-8791a | 6 | ......__ | 1 | 75 |
| MIMAT0034070 | gra-miR7504h | 3 | _......_ | 8 | 75 |
| MIMAT0034069 | gra-miR7504g | 3 | _......_ | 8 | 75 |
| MIMAT0033744 | pxy-miR-8513-5p | 3 | __...... | 8 | 75 |
| MIMAT0033711 | pxy-miR-8499c | 8 | __...... | 3 | 75 |
| MIMAT0033047 | ppc-miR-8274-5p | 2 | ......__ | 7 | 75 |
| MIMAT0032552 | ssa-miR-23b-5p | 8 | __...... | 3 | 75 |
| MIMAT0032459 | ssa-miR-196b-3p | 2 | __...... | 7 | 75 |
| MIMAT0031556 | ppe-miR8130-5p | 8 | __...... | 3 | 75 |
| MIMAT0031403 | mmu-miR-8100 | 3 | _......_ | 8 | 75 |
| MIMAT0031385 | aly-miR2111c-3p | 7 | ......__ | 2 | 75 |
| MIMAT0031215 | stu-miR8036-5p | 2 | _......_ | 7 | 75 |
| MIMAT0030551 | prd-miR-7889-3p | 2 | _......_ | 7 | 75 |
| MIMAT0030449 | bta-miR-7864 | 7 | _......_ | 2 | 75 |
| MIMAT0032256 | rgl-miR7810 | 2 | _......_ | 7 | 75 |
| MIMAT0030198 | bdi-miR7732-5p | 6 | _......_ | 1 | 75 |
| MIMAT0029953 | osa-miR1437b-5p | 3 | _......_ | 8 | 75 |
| MIMAT0029353 | lja-miR7530 | 8 | _......_ | 3 | 75 |
| MIMAT0029159 | ghr-miR7504b | 3 | _......_ | 8 | 75 |
| MIMAT0029029 | gga-miR-7437-3p | 7 | _......_ | 2 | 75 |
| MIMAT0028720 | mdo-miR-7354-5p | 2 | _......_ | 7 | 75 |
| MIMAT0028303 | mml-miR-7179-3p | 3 | __...... | 8 | 75 |
| MIMAT0028293 | mml-miR-7176-3p | 8 | __...... | 3 | 75 |
| MIMAT0028246 | mml-miR-3059-5p | 7 | _......_ | 2 | 75 |
| MIMAT0027750 | mmu-miR-6925-5p | 2 | _......_ | 7 | 75 |
| MIMAT0027704 | mmu-miR-6902-5p | 6 | _......_ | 1 | 75 |
| MIMAT0027618 | hsa-miR-6859-5p | 3 | _......_ | 8 | 75 |
| MIMAT0025729 | gga-miR-6633-5p | 2 | _......_ | 7 | 75 |
| MIMAT0025312 | prv-miR-LLT9 | 3 | ......__ | 8 | 75 |
| MIMAT0025291 | hbr-miR6482 | 2 | __...... | 7 | 75 |
| MIMAT0025114 | mmu-miR-6370 | 3 | __...... | 8 | 75 |
| MIMAT0024876 | osa-miR6253 | 1 | _......_ | 6 | 75 |
| MIMAT0024440 | mse-miR-276 | 2 | __...... | 7 | 75 |
| MIMAT0024311 | mml-miR-873-5p | 3 | __...... | 8 | 75 |
| MIMAT0024167 | ggo-miR-873 | 3 | __...... | 8 | 75 |
| MIMAT0024107 | ggo-miR-151a | 2 | ......__ | 7 | 75 |
| MIMAT0023864 | cgr-miR-23b-5p | 8 | __...... | 3 | 75 |
| MIMAT0023782 | cgr-miR-151-5p | 2 | ......__ | 7 | 75 |
| MIMAT0023673 | ame-miR-6049 | 1 | __...... | 6 | 75 |
| MIMAT0023664 | ame-miR-6042 | 2 | __...... | 7 | 75 |
| MIMAT0023261 | osa-miR5794 | 2 | _......_ | 7 | 75 |
| MIMAT0023260 | osa-miR5793 | 1 | ......__ | 6 | 75 |
| MIMAT0023035 | tur-miR-276-3p | 2 | __...... | 7 | 75 |
| MIMAT0022359 | mmu-miR-5616-5p | 7 | _......_ | 2 | 75 |
| MIMAT0022047 | aca-miR-5426-3p | 2 | _......_ | 7 | 75 |
| MIMAT0021897 | aca-miR-23b-5p | 8 | __...... | 3 | 75 |
| MIMAT0021182 | mtr-miR5224a | 2 | ......__ | 7 | 75 |
| MIMAT0021142 | mtr-miR5209 | 1 | ......__ | 6 | 75 |
| MIMAT0019616 | pma-miR-4583 | 3 | __...... | 8 | 75 |
| MIMAT0019031 | hsa-miR-4496 | 1 | _......_ | 6 | 75 |
| MIMAT0018430 | nlo-miR-276 | 2 | __...... | 7 | 75 |
| MIMAT0018406 | ngi-miR-276 | 2 | __...... | 7 | 75 |
| MIMAT0018326 | gma-miR4407 | 3 | _......_ | 8 | 75 |
| MIMAT0018919 | isc-miR-276 | 2 | __...... | 7 | 75 |
| MIMAT0018190 | hsa-miR-3916 | 3 | _......_ | 8 | 75 |
| MIMAT0018189 | hsa-miR-3915 | 3 | _......_ | 8 | 75 |
| MIMAT0018188 | hsa-miR-3914 | 2 | __...... | 7 | 75 |
| MIMAT0018810 | tca-miR-2944c-5p | 3 | __...... | 8 | 75 |
| MIMAT0018807 | tca-miR-252b-3p | 6 | ......__ | 1 | 75 |
| MIMAT0018746 | tca-miR-2944b-5p | 3 | __...... | 8 | 75 |
| MIMAT0018728 | tca-miR-3842-5p | 3 | _......_ | 8 | 75 |
| MIMAT0017942 | ath-miR4221 | 8 | _......_ | 3 | 75 |
| MIMAT0016530 | cin-miR-4018b-5p | 1 | __...... | 6 | 75 |
| MIMAT0016966 | cin-miR-4001i-5p | 1 | __...... | 6 | 75 |
| MIMAT0017888 | rno-miR-3589 | 1 | _......_ | 6 | 75 |
| MIMAT0016390 | gga-miR-3539 | 3 | _......_ | 8 | 75 |
| MIMAT0016371 | bra-miR2111b-3p | 7 | ......__ | 2 | 75 |
| MIMAT0016369 | bra-miR2111a-3p | 7 | ......__ | 2 | 75 |
| MIMAT0016296 | sja-miR-3487 | 6 | ......__ | 1 | 75 |
| MIMAT0016284 | sja-miR-3482-5p | 8 | ......__ | 3 | 75 |
| MIMAT0016111 | ppy-miR-873 | 3 | __...... | 8 | 75 |
| MIMAT0016052 | ppy-miR-611 | 2 | ......__ | 7 | 75 |
| MIMAT0015775 | ppy-miR-151a-5p | 2 | ......__ | 7 | 75 |
| MIMAT0015687 | nvi-miR-276 | 2 | __...... | 7 | 75 |
| MIMAT0017785 | esi-miR3456-5p | 3 | _......_ | 8 | 75 |
| MIMAT0017660 | aly-miR2111b-3p | 7 | ......__ | 2 | 75 |
| MIMAT0017658 | aly-miR2111a-3p | 7 | ......__ | 2 | 75 |
| MIMAT0015519 | bmo-miR-3332 | 6 | ......__ | 1 | 75 |
| MIMAT0019208 | hsa-miR-3074-5p | 6 | __...... | 1 | 75 |
| MIMAT0014996 | hsa-miR-3131 | 2 | ......__ | 7 | 75 |
| MIMAT0014988 | hsa-miR-3125 | 3 | _......_ | 8 | 75 |
| MIMAT0014869 | mmu-miR-3080-3p | 6 | ......__ | 1 | 75 |
| MIMAT0014856 | mmu-miR-3074-5p | 6 | __...... | 1 | 75 |
| MIMAT0014833 | mmu-miR-3063-3p | 2 | _......_ | 7 | 75 |
| MIMAT0014792 | api-miR-3051 | 2 | __...... | 7 | 75 |
| MIMAT0014393 | cqu-miR-276-3p | 2 | __...... | 7 | 75 |
| MIMAT0014304 | aae-miR-2944b-5p | 3 | __...... | 8 | 75 |
| MIMAT0014302 | aae-miR-2944a-5p | 3 | __...... | 8 | 75 |
| MIMAT0014223 | aae-miR-276-3p | 2 | __...... | 7 | 75 |
| MIMAT0014133 | api-miR-276 | 2 | __...... | 7 | 75 |
| MIMAT0016952 | rlcv-miR-rL1-28-3p | 1 | _......_ | 6 | 75 |
| MIMAT0015345 | zma-miR395m-5p | 6 | __...... | 1 | 75 |
| MIMAT0015344 | zma-miR395l-5p | 6 | __...... | 1 | 75 |
| MIMAT0013882 | ssc-miR-151-5p | 2 | ......__ | 7 | 75 |
| MIMAT0013120 | eca-miR-873 | 3 | __...... | 8 | 75 |
| MIMAT0013004 | eca-miR-151-5p | 2 | ......__ | 7 | 75 |
| MIMAT0026954 | mml-miR-670-3p | 7 | _......_ | 2 | 75 |
| MIMAT0013757 | bmo-miR-2840 | 2 | __...... | 7 | 75 |
| MIMAT0012652 | dpu-miR-276 | 2 | __...... | 7 | 75 |
| MIMAT0013584 | cte-miR-2715 | 7 | _......_ | 2 | 75 |
| MIMAT0013514 | mtr-miR2680e | 6 | ......__ | 1 | 75 |
| MIMAT0013513 | mtr-miR2680d | 6 | ......__ | 1 | 75 |
| MIMAT0013512 | mtr-miR2680c | 6 | ......__ | 1 | 75 |
| MIMAT0013511 | mtr-miR2680b | 6 | ......__ | 1 | 75 |
| MIMAT0013510 | mtr-miR2680a | 6 | ......__ | 1 | 75 |
| MIMAT0026928 | mtr-miR2111m-3p | 7 | ......__ | 2 | 75 |
| MIMAT0013251 | mtr-miR2586a | 1 | ......__ | 6 | 75 |
| MIMAT0012293 | dps-miR-276c | 2 | __...... | 7 | 75 |
| MIMAT0012058 | bta-miR-2468 | 3 | __...... | 8 | 75 |
| MIMAT0011783 | bna-miR2111a-3p | 7 | ......__ | 2 | 75 |
| MIMAT0011781 | bna-miR2111b-3p | 7 | ......__ | 2 | 75 |
| MIMAT0010139 | lmi-miR-276-3p | 2 | __...... | 7 | 75 |
| MIMAT0011153 | ath-miR2111b-3p | 7 | ......__ | 2 | 75 |
| MIMAT0011151 | ath-miR2111a-3p | 7 | ......__ | 2 | 75 |
| MIMAT0009789 | nve-miR-2033-3p | 6 | ......__ | 1 | 75 |
| MIMAT0009377 | bta-miR-873 | 3 | __...... | 8 | 75 |
| MIMAT0009125 | dya-miR-276b | 2 | __...... | 7 | 75 |
| MIMAT0009117 | dya-miR-276a | 2 | __...... | 7 | 75 |
| MIMAT0009101 | dya-miR-5 | 3 | __...... | 8 | 75 |
| MIMAT0009041 | dwi-miR-5 | 3 | __...... | 8 | 75 |
| MIMAT0009019 | dwi-miR-276b-3p | 2 | __...... | 7 | 75 |
| MIMAT0009008 | dwi-miR-276a-3p | 2 | __...... | 7 | 75 |
| MIMAT0008961 | dvi-miR-5-5p | 3 | __...... | 8 | 75 |
| MIMAT0008943 | dvi-miR-276a-3p | 2 | __...... | 7 | 75 |
| MIMAT0008942 | dvi-miR-276b-3p | 2 | __...... | 7 | 75 |
| MIMAT0008895 | dsi-miR-276b | 2 | __...... | 7 | 75 |
| MIMAT0008892 | dsi-miR-276a | 2 | __...... | 7 | 75 |
| MIMAT0008890 | dsi-miR-5 | 3 | __...... | 8 | 75 |
| MIMAT0008829 | dse-miR-5 | 3 | __...... | 8 | 75 |
| MIMAT0008791 | dse-miR-276a | 2 | __...... | 7 | 75 |
| MIMAT0008778 | dse-miR-276b | 2 | __...... | 7 | 75 |
| MIMAT0008750 | dpe-miR-276b | 2 | __...... | 7 | 75 |
| MIMAT0008714 | dpe-miR-5 | 3 | __...... | 8 | 75 |
| MIMAT0008705 | dpe-miR-276a | 2 | __...... | 7 | 75 |
| MIMAT0008691 | dmo-miR-5 | 3 | __...... | 8 | 75 |
| MIMAT0008654 | dmo-miR-276a | 2 | __...... | 7 | 75 |
| MIMAT0008631 | dmo-miR-276b | 2 | __...... | 7 | 75 |
| MIMAT0008576 | dgr-miR-276a-3p | 2 | __...... | 7 | 75 |
| MIMAT0008574 | dgr-miR-276b-3p | 2 | __...... | 7 | 75 |
| MIMAT0008570 | dgr-miR-5 | 3 | __...... | 8 | 75 |
| MIMAT0008542 | der-miR-276b | 2 | __...... | 7 | 75 |
| MIMAT0008529 | der-miR-276a | 2 | __...... | 7 | 75 |
| MIMAT0008482 | der-miR-5 | 3 | __...... | 8 | 75 |
| MIMAT0008457 | dan-miR-5 | 3 | __...... | 8 | 75 |
| MIMAT0008455 | dan-miR-276a | 2 | __...... | 7 | 75 |
| MIMAT0008446 | dan-miR-276b | 2 | __...... | 7 | 75 |
| MIMAT0008381 | tca-miR-276-3p | 2 | __...... | 7 | 75 |
| MIMAT0008324 | ptr-miR-873 | 3 | __...... | 8 | 75 |
| MIMAT0006686 | cfa-miR-1841 | 2 | _......_ | 7 | 75 |
| MIMAT0006615 | cfa-miR-151 | 2 | ......__ | 7 | 75 |
| MIMAT0006463 | mml-miR-611 | 2 | ......__ | 7 | 75 |
| MIMAT0006212 | mml-miR-151-5p | 2 | ......__ | 7 | 75 |
| MIMAT0026800 | mml-miR-23b-5p | 8 | __...... | 3 | 75 |
| MIMAT0007576 | gga-miR-1687-5p | 2 | _......_ | 7 | 75 |
| MIMAT0007566 | gga-miR-1680-5p | 6 | _......_ | 1 | 75 |
| MIMAT0007450 | gga-miR-1588 | 2 | __...... | 7 | 75 |
| MIMAT0006917 | oan-miR-1345 | 3 | ......__ | 8 | 75 |
| MIMAT0005339 | rno-miR-873-5p | 3 | __...... | 8 | 75 |
| MIMAT0004953 | hsa-miR-873-5p | 3 | __...... | 8 | 75 |
| MIMAT0004936 | mmu-miR-873a-5p | 3 | __...... | 8 | 75 |
| MIMAT0026713 | mdo-miR-23b-5p | 8 | __...... | 3 | 75 |
| MIMAT0026710 | mdo-miR-23a-5p | 7 | __...... | 2 | 75 |
| MIMAT0012538 | bta-miR-23b-5p | 8 | __...... | 3 | 75 |
| MIMAT0015232 | bmo-miR-276-3p | 2 | __...... | 7 | 75 |
| MIMAT0003523 | bta-miR-151-5p | 2 | ......__ | 7 | 75 |
| MIMAT0014811 | mmu-miR-3059-5p | 7 | _......_ | 2 | 75 |
| MIMAT0017242 | mmu-miR-670-3p | 7 | _......_ | 2 | 75 |
| MIMAT0026640 | hsa-miR-670-3p | 7 | _......_ | 2 | 75 |
| MIMAT0022714 | hsa-miR-766-5p | 3 | _......_ | 8 | 75 |
| MIMAT0010214 | hsa-miR-151b | 2 | ......__ | 7 | 75 |
| MIMAT0003279 | hsa-miR-611 | 2 | ......__ | 7 | 75 |
| MIMAT0026599 | mml-miR-23a-5p | 7 | __...... | 2 | 75 |
| MIMAT0001567 | mghv-miR-M1-4-5p | 2 | ......__ | 7 | 75 |
| MIMAT0006782 | aga-miR-276-3p | 2 | __...... | 7 | 75 |
| MIMAT0001480 | ame-miR-276 | 2 | __...... | 7 | 75 |
| MIMAT0001240 | dps-miR-276b | 2 | __...... | 7 | 75 |
| MIMAT0001239 | dps-miR-276a | 2 | __...... | 7 | 75 |
| MIMAT0001207 | dps-miR-5 | 3 | __...... | 8 | 75 |
| MIMAT0026546 | gga-miR-23b-5p | 8 | __...... | 3 | 75 |
| MIMAT0017166 | rno-miR-298-3p | 1 | __...... | 6 | 75 |
| MIMAT0017142 | rno-miR-185-3p | 7 | _......_ | 2 | 75 |
| MIMAT0017099 | rno-miR-23b-5p | 8 | __...... | 3 | 75 |
| MIMAT0004697 | hsa-miR-151a-5p | 2 | ......__ | 7 | 75 |
| MIMAT0000613 | rno-miR-151-5p | 2 | ......__ | 7 | 75 |
| MIMAT0000354 | dme-miR-276b-3p | 2 | __...... | 7 | 75 |
| MIMAT0000337 | dme-miR-276a-3p | 2 | __...... | 7 | 75 |
| MIMAT0015116 | cel-miR-240-5p | 1 | ......__ | 6 | 75 |
| MIMAT0004536 | mmu-miR-151-5p | 2 | ......__ | 7 | 75 |
| MIMAT0016980 | mmu-miR-23b-5p | 8 | __...... | 3 | 75 |
| MIMAT0000110 | dme-miR-5-5p | 3 | __...... | 8 | 75 |
