| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | cgaggcgc | 8 | ||
| MIMAT0018680 | tca-miR-3826-5p | 1 | ......._ | 7 | 87 |
| MIMAT0015388 | bmo-miR-3209 | 1 | ......._ | 7 | 87 |
| MIMAT0015082 | hsa-miR-3197 | 2 | _....... | 8 | 87 |
| MIMAT0026636 | hsa-miR-668-5p | 8 | _....... | 2 | 87 |
| MIMAT0033178 | ppc-miR-8319-5p | 1 | ......t. | 8 | 87 |
| MIMAT0017855 | rno-miR-1188-3p | 1 | ......t. | 8 | 87 |
| MIMAT0026808 | mml-miR-33b-3p | 8 | ......a. | 1 | 87 |
| MIMAT0002186 | kshv-miR-K12-8-3p | 1 | .t...... | 8 | 87 |
| MIMAT0036424 | ggo-miR-524-3p | 3 | __...... | 8 | 75 |
| MIMAT0036413 | ggo-miR-525-3p | 3 | __...... | 8 | 75 |
| MIMAT0034682 | eca-miR-9131 | 3 | _......_ | 8 | 75 |
| MIMAT0034673 | eca-miR-9123 | 7 | __...... | 2 | 75 |
| MIMAT0034623 | eca-miR-9078 | 3 | ......__ | 8 | 75 |
| MIMAT0032969 | ppc-miR-8251-3p | 7 | ......__ | 2 | 75 |
| MIMAT0032874 | ppc-miR-8220-5p | 1 | __...... | 6 | 75 |
| MIMAT0032801 | cel-miR-8194-5p | 8 | __...... | 3 | 75 |
| MIMAT0032733 | ssa-miR-7132b-3p | 2 | _......_ | 7 | 75 |
| MIMAT0031644 | bbe-miR-210-3p | 6 | _......_ | 1 | 75 |
| MIMAT0030281 | bdi-miR7766-3p | 1 | ......__ | 6 | 75 |
| MIMAT0029908 | mmu-miR-7689-5p | 2 | ......__ | 7 | 75 |
| MIMAT0029792 | mmu-miR-6546-5p | 1 | __...... | 6 | 75 |
| MIMAT0029792 | mmu-miR-6546-5p | 8 | __...... | 3 | 75 |
| MIMAT0028499 | mdo-miR-7265-3p | 2 | __...... | 7 | 75 |
| MIMAT0027856 | mmu-miR-6977-5p | 3 | _......_ | 8 | 75 |
| MIMAT0027430 | hsa-miR-6765-5p | 3 | _......_ | 8 | 75 |
| MIMAT0025853 | hsa-miR-6722-5p | 1 | __...... | 6 | 75 |
| MIMAT0025851 | hsa-miR-6720-3p | 7 | __...... | 2 | 75 |
| MIMAT0024339 | mml-miR-1304 | 3 | ......__ | 8 | 75 |
| MIMAT0023712 | hsa-miR-6087 | 2 | _......_ | 7 | 75 |
| MIMAT0023672 | ame-miR-6048 | 2 | _......_ | 7 | 75 |
| MIMAT0022367 | mmu-miR-5620-5p | 2 | ......__ | 7 | 75 |
| MIMAT0021562 | asu-miR-5352-5p | 2 | __...... | 7 | 75 |
| MIMAT0018873 | tca-miR-3887-3p | 8 | __...... | 3 | 75 |
| MIMAT0018841 | tca-miR-3874-3p | 6 | _......_ | 1 | 75 |
| MIMAT0018832 | tca-miR-3870-5p | 2 | ......__ | 7 | 75 |
| MIMAT0018587 | ame-miR-3800 | 1 | ......__ | 6 | 75 |
| MIMAT0018552 | ame-miR-3775 | 1 | _......_ | 6 | 75 |
| MIMAT0018515 | ame-miR-3747a | 1 | ......__ | 6 | 75 |
| MIMAT0016224 | ppy-miR-1304 | 3 | ......__ | 8 | 75 |
| MIMAT0016202 | ppy-miR-1281 | 7 | _......_ | 2 | 75 |
| MIMAT0016010 | ppy-miR-566 | 8 | __...... | 3 | 75 |
| MIMAT0015983 | ppy-miR-525-3p | 3 | __...... | 8 | 75 |
| MIMAT0015981 | ppy-miR-524-3p | 3 | __...... | 8 | 75 |
| MIMAT0017573 | aly-miR399b-5p | 8 | __...... | 3 | 75 |
| MIMAT0019192 | rlcv-miR-rL1-27-5p | 8 | _......_ | 3 | 75 |
| MIMAT0013632 | bmo-miR-2760-5p | 1 | ......__ | 6 | 75 |
| MIMAT0013518 | hsa-miR-2682-3p | 6 | _......_ | 1 | 75 |
| MIMAT0013496 | mtr-miR2675 | 1 | ......__ | 6 | 75 |
| MIMAT0013288 | mtr-miR2111g-3p | 7 | ......__ | 2 | 75 |
| MIMAT0032101 | gma-miR2109-3p | 2 | _......_ | 7 | 75 |
| MIMAT0009962 | bta-miR-1281 | 7 | _......_ | 2 | 75 |
| MIMAT0019149 | bfl-miR-210-5p | 6 | _......_ | 1 | 75 |
| MIMAT0032094 | dvi-miR-87-5p | 8 | __...... | 3 | 75 |
| MIMAT0008244 | ptr-miR-566 | 8 | __...... | 3 | 75 |
| MIMAT0008209 | ptr-miR-525 | 3 | __...... | 8 | 75 |
| MIMAT0008208 | ptr-miR-524 | 3 | __...... | 8 | 75 |
| MIMAT0008000 | ptr-miR-1281 | 7 | _......_ | 2 | 75 |
| MIMAT0006775 | cel-miR-1833 | 1 | ......__ | 6 | 75 |
| MIMAT0007590 | gga-miR-1698 | 1 | ......__ | 6 | 75 |
| MIMAT0005939 | hsa-miR-1281 | 7 | _......_ | 2 | 75 |
| MIMAT0017328 | mmu-miR-1188-3p | 3 | ......__ | 8 | 75 |
| MIMAT0003458 | mmu-miR-681 | 8 | ......__ | 3 | 75 |
| MIMAT0003230 | hsa-miR-566 | 8 | __...... | 3 | 75 |
| MIMAT0002850 | hsa-miR-524-3p | 3 | __...... | 8 | 75 |
| MIMAT0002839 | hsa-miR-525-3p | 3 | __...... | 8 | 75 |
| MIMAT0001003 | ath-miR402 | 3 | ......__ | 8 | 75 |
| MIMAT0020821 | dme-miR-87-5p | 8 | __...... | 3 | 75 |
