| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | cgatcgca | 8 | ||
| MIMAT0004406 | rrv-miR-rR1-1-5p | 1 | ........ | 8 | 100 |
| MIMAT0004406 | rrv-miR-rR1-1-5p | 6 | ......__ | 1 | 75 |
| MIMAT0032903 | ppc-miR-8229a-3p | 1 | _....... | 7 | 87 |
| MIMAT0020170 | dme-miR-4954-3p | 2 | ......._ | 8 | 87 |
| MIMAT0020170 | dme-miR-4954-3p | 7 | ......__ | 2 | 75 |
| MIMAT0036374 | gma-miR9747 | 8 | __...... | 3 | 75 |
| MIMAT0034637 | eca-miR-9092 | 8 | _......_ | 3 | 75 |
| MIMAT0034520 | eca-miR-8983 | 6 | __...... | 1 | 75 |
| MIMAT0033890 | atr-miR8601 | 6 | __...... | 1 | 75 |
| MIMAT0033825 | atr-miR8554 | 6 | __...... | 1 | 75 |
| MIMAT0033423 | str-miR-7880v-3p | 8 | __...... | 3 | 75 |
| MIMAT0033322 | str-miR-7880f-3p | 8 | __...... | 3 | 75 |
| MIMAT0032986 | ppc-miR-8259-5p | 6 | __...... | 1 | 75 |
| MIMAT0030552 | prd-miR-7873b-5p | 8 | _......_ | 3 | 75 |
| MIMAT0030219 | bdi-miR7726b-3p | 6 | __...... | 1 | 75 |
| MIMAT0028967 | oan-miR-7410-3p | 6 | __...... | 1 | 75 |
| MIMAT0028310 | mml-miR-7182-5p | 1 | __...... | 6 | 75 |
| MIMAT0023687 | ame-miR-6063 | 3 | ......__ | 8 | 75 |
| MIMAT0023687 | ame-miR-6063 | 8 | ......__ | 3 | 75 |
| MIMAT0022139 | osa-miR5506 | 3 | _......_ | 8 | 75 |
| MIMAT0020582 | osa-miR5082 | 6 | __...... | 1 | 75 |
| MIMAT0019346 | mmu-miR-1843b-3p | 2 | ......__ | 7 | 75 |
| MIMAT0019346 | mmu-miR-1843b-3p | 7 | ......__ | 2 | 75 |
| MIMAT0018726 | tca-miR-3841-5p | 8 | __...... | 3 | 75 |
| MIMAT0011985 | bta-miR-2419-5p | 1 | __...... | 6 | 75 |
| MIMAT0009773 | nve-miR-2027-3p | 7 | __...... | 2 | 75 |
| MIMAT0006770 | cel-miR-1829b-5p | 8 | _......_ | 3 | 75 |
