| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | cgcaccac | 8 | ||
| MIMAT0003433 | rlcv-miR-rL1-5-3p | 1 | ........ | 8 | 100 |
| MIMAT0003411 | ebv-miR-BART3-3p | 1 | ........ | 8 | 100 |
| MIMAT0033868 | atr-miR8583 | 1 | _....... | 7 | 87 |
| MIMAT0024305 | ggo-miR-675b | 7 | ......._ | 1 | 87 |
| MIMAT0016976 | cin-miR-4014-2-5p | 1 | _....... | 7 | 87 |
| MIMAT0016098 | ppy-miR-675a | 7 | ......._ | 1 | 87 |
| MIMAT0014934 | mmu-miR-3102-5p.2-5p | 8 | _....... | 2 | 87 |
| MIMAT0013174 | eca-miR-770-5p | 2 | _....... | 8 | 87 |
| MIMAT0012841 | rno-miR-675-5p | 7 | ......._ | 1 | 87 |
| MIMAT0006507 | mml-miR-675-5p | 7 | ......._ | 1 | 87 |
| MIMAT0005338 | rno-miR-770-5p | 2 | _....... | 8 | 87 |
| MIMAT0004284 | hsa-miR-675-5p | 7 | ......._ | 1 | 87 |
| MIMAT0004822 | mmu-miR-770-5p | 2 | _....... | 8 | 87 |
| MIMAT0003725 | mmu-miR-675-5p | 7 | ......._ | 1 | 87 |
| MIMAT0014907 | mmu-miR-3093-5p | 1 | ......c. | 8 | 87 |
| MIMAT0037070 | ssc-miR-9851-3p | 3 | _......_ | 8 | 75 |
| MIMAT0036879 | oha-miR-29b-3p | 3 | _......_ | 8 | 75 |
| MIMAT0036877 | oha-miR-29a-3p | 3 | _......_ | 8 | 75 |
| MIMAT0036774 | oha-miR-1905 | 1 | __...... | 6 | 75 |
| MIMAT0036685 | oha-miR-1306-5p | 1 | __...... | 6 | 75 |
| MIMAT0036546 | tch-miR-29c-3p | 3 | _......_ | 8 | 75 |
| MIMAT0036511 | tch-miR-29a-3p | 3 | _......_ | 8 | 75 |
| MIMAT0036494 | tch-miR-29b-3p | 3 | _......_ | 8 | 75 |
| MIMAT0036293 | chi-miR-767 | 2 | _......_ | 7 | 75 |
| MIMAT0036117 | chi-miR-29c-3p | 3 | _......_ | 8 | 75 |
| MIMAT0036115 | chi-miR-29b-3p | 3 | _......_ | 8 | 75 |
| MIMAT0036113 | chi-miR-29a-3p | 3 | _......_ | 8 | 75 |
| MIMAT0036035 | chi-miR-197-3p | 3 | __...... | 8 | 75 |
| MIMAT0035613 | dvi-miR-998-3p | 3 | _......_ | 8 | 75 |
| MIMAT0035609 | dvi-miR-995-3p | 3 | _......_ | 8 | 75 |
| MIMAT0035355 | gsa-miR-9403-3p | 7 | __...... | 2 | 75 |
| MIMAT0035181 | efu-miR-9364 | 2 | __...... | 7 | 75 |
| MIMAT0035050 | efu-miR-9323 | 2 | __...... | 7 | 75 |
| MIMAT0034952 | efu-miR-9292 | 2 | _......_ | 7 | 75 |
| MIMAT0034930 | efu-miR-9282 | 6 | _......_ | 1 | 75 |
| MIMAT0034780 | efu-miR-9198b | 8 | _......_ | 3 | 75 |
| MIMAT0034679 | eca-miR-9128 | 7 | _......_ | 2 | 75 |
| MIMAT0033774 | pxy-miR-8531 | 7 | ......__ | 2 | 75 |
| MIMAT0033583 | sma-miR-8439-3p | 7 | _......_ | 2 | 75 |
| MIMAT0033240 | ppc-miR-8286b-5p | 3 | ......__ | 8 | 75 |
| MIMAT0033077 | ppc-miR-8286a-5p | 3 | ......__ | 8 | 75 |
| MIMAT0032957 | ppc-miR-8246-3p | 8 | _......_ | 3 | 75 |
| MIMAT0032887 | ppc-miR-83-3p | 3 | _......_ | 8 | 75 |
| MIMAT0032591 | ssa-miR-29c-3p | 3 | _......_ | 8 | 75 |
| MIMAT0032586 | ssa-miR-29b-3p | 3 | _......_ | 8 | 75 |
| MIMAT0032584 | ssa-miR-29a-3p | 3 | _......_ | 8 | 75 |
| MIMAT0031751 | bma-miR-49 | 3 | _......_ | 8 | 75 |
| MIMAT0031665 | bbe-miR-29b-3p | 3 | _......_ | 8 | 75 |
| MIMAT0031663 | bbe-miR-29a-3p | 3 | _......_ | 8 | 75 |
| MIMAT0031620 | bbe-miR-2060b-3p | 1 | _......_ | 6 | 75 |
| MIMAT0031619 | bbe-miR-2060a-3p | 1 | _......_ | 6 | 75 |
| MIMAT0031614 | bbe-miR-2057-3p | 8 | __...... | 3 | 75 |
| MIMAT0031532 | ppe-miR8124-3p | 3 | _......_ | 8 | 75 |
| MIMAT0031404 | mmu-miR-497b | 1 | __...... | 6 | 75 |
| MIMAT0030741 | prd-miR-49-3p | 3 | _......_ | 8 | 75 |
| MIMAT0030442 | bta-miR-7862 | 6 | _......_ | 1 | 75 |
| MIMAT0030243 | bdi-miR7751-3p | 8 | _......_ | 3 | 75 |
| MIMAT0030054 | oar-miR-29b | 3 | _......_ | 8 | 75 |
| MIMAT0032196 | lva-miR-29b-3p | 3 | _......_ | 8 | 75 |
| MIMAT0032195 | lva-miR-29a-3p | 3 | _......_ | 8 | 75 |
| MIMAT0032146 | pmi-miR-29b-3p | 3 | _......_ | 8 | 75 |
| MIMAT0032145 | pmi-miR-29a-3p | 3 | _......_ | 8 | 75 |
| MIMAT0029868 | mmu-miR-7677-5p | 7 | __...... | 2 | 75 |
| MIMAT0029746 | cbn-miR-83 | 3 | _......_ | 8 | 75 |
| MIMAT0029745 | cbn-miR-49 | 3 | _......_ | 8 | 75 |
| MIMAT0031149 | aja-miR-29c | 3 | _......_ | 8 | 75 |
| MIMAT0031135 | aja-miR-29b | 3 | _......_ | 8 | 75 |
| MIMAT0029089 | gga-miR-7467-3p | 1 | __...... | 6 | 75 |
| MIMAT0028559 | mdo-miR-7288-3p | 2 | __...... | 7 | 75 |
| MIMAT0028474 | mdo-miR-7254-5p | 2 | __...... | 7 | 75 |
| MIMAT0026287 | ccr-miR-29b | 3 | _......_ | 8 | 75 |
| MIMAT0026286 | ccr-miR-29a | 3 | _......_ | 8 | 75 |
| MIMAT0027992 | mmu-miR-7044-5p | 8 | __...... | 3 | 75 |
| MIMAT0027509 | hsa-miR-6804-3p | 1 | ......__ | 6 | 75 |
| MIMAT0025864 | blv-miR-B4-3p | 3 | _......_ | 8 | 75 |
| MIMAT0025822 | gga-miR-6712-5p | 7 | __...... | 2 | 75 |
| MIMAT0025001 | hme-miR-998 | 3 | _......_ | 8 | 75 |
| MIMAT0024970 | hme-miR-285 | 3 | _......_ | 8 | 75 |
| MIMAT0024436 | mse-miR-285 | 3 | _......_ | 8 | 75 |
| MIMAT0024423 | mse-miR-998 | 3 | _......_ | 8 | 75 |
| MIMAT0024212 | ggo-miR-767 | 2 | _......_ | 7 | 75 |
| MIMAT0024180 | ggo-miR-197 | 3 | __...... | 8 | 75 |
| MIMAT0024084 | ggo-miR-29c | 3 | _......_ | 8 | 75 |
| MIMAT0024032 | ptr-miR-767 | 2 | _......_ | 7 | 75 |
| MIMAT0023888 | cgr-miR-29c-3p | 3 | _......_ | 8 | 75 |
| MIMAT0023886 | cgr-miR-29b-3p | 3 | _......_ | 8 | 75 |
| MIMAT0023884 | cgr-miR-29a-3p | 3 | _......_ | 8 | 75 |
| MIMAT0023355 | hco-miR-83 | 3 | _......_ | 8 | 75 |
| MIMAT0022656 | ola-miR-29c | 3 | _......_ | 8 | 75 |
| MIMAT0022570 | ola-miR-29a | 2 | _......_ | 7 | 75 |
| MIMAT0022569 | ola-miR-29b | 3 | _......_ | 8 | 75 |
| MIMAT0022371 | mmu-miR-5622-5p | 3 | __...... | 8 | 75 |
| MIMAT0022165 | osa-miR5530 | 7 | __...... | 2 | 75 |
| MIMAT0021914 | aca-miR-29b | 3 | _......_ | 8 | 75 |
| MIMAT0021912 | aca-miR-29a-3p | 3 | _......_ | 8 | 75 |
| MIMAT0021476 | asu-miR-83-3p | 3 | _......_ | 8 | 75 |
| MIMAT0021460 | asu-miR-49-3p | 3 | _......_ | 8 | 75 |
| MIMAT0020710 | bdi-miR166g-3p | 7 | __...... | 2 | 75 |
| MIMAT0021104 | osa-miR5154 | 2 | _......_ | 7 | 75 |
| MIMAT0020161 | dme-miR-4949-3p | 7 | __...... | 2 | 75 |
| MIMAT0020067 | spu-miR-29b | 3 | _......_ | 8 | 75 |
| MIMAT0019421 | pma-miR-29d-3p | 3 | _......_ | 8 | 75 |
| MIMAT0019419 | pma-miR-29c | 3 | _......_ | 8 | 75 |
| MIMAT0019418 | pma-miR-29b | 3 | _......_ | 8 | 75 |
| MIMAT0019417 | pma-miR-29a-3p | 3 | _......_ | 8 | 75 |
| MIMAT0018993 | hsa-miR-4466 | 7 | ......__ | 2 | 75 |
| MIMAT0018401 | ngi-miR-29b | 3 | _......_ | 8 | 75 |
| MIMAT0018899 | tca-miR-3897-3p | 7 | __...... | 2 | 75 |
| MIMAT0018853 | tca-miR-998-3p | 3 | _......_ | 8 | 75 |
| MIMAT0018803 | tca-miR-29-3p | 3 | _......_ | 8 | 75 |
| MIMAT0018629 | tca-miR-995-3p | 3 | _......_ | 8 | 75 |
| MIMAT0018521 | ame-miR-3751 | 8 | __...... | 3 | 75 |
| MIMAT0018008 | vvi-miR3623-3p | 6 | _......_ | 1 | 75 |
| MIMAT0016402 | cin-miR-29-3p | 3 | _......_ | 8 | 75 |
| MIMAT0016107 | ppy-miR-767-5p | 2 | _......_ | 7 | 75 |
| MIMAT0015735 | ppy-miR-29c | 3 | _......_ | 8 | 75 |
| MIMAT0015656 | nvi-miR-29b | 3 | _......_ | 8 | 75 |
| MIMAT0014967 | oar-miR-29a | 3 | _......_ | 8 | 75 |
| MIMAT0014849 | mmu-miR-3070-2-3p | 6 | _......_ | 1 | 75 |
| MIMAT0014847 | mmu-miR-3070-3p | 6 | _......_ | 1 | 75 |
| MIMAT0014747 | api-miR-998 | 3 | _......_ | 8 | 75 |
| MIMAT0014726 | api-miR-29 | 3 | _......_ | 8 | 75 |
| MIMAT0014601 | tgu-miR-29b-3p | 3 | _......_ | 8 | 75 |
| MIMAT0014532 | tgu-miR-29a-3p | 3 | _......_ | 8 | 75 |
| MIMAT0014445 | cqu-miR-998 | 3 | _......_ | 8 | 75 |
| MIMAT0014434 | cqu-miR-2941-1-5p | 7 | __...... | 2 | 75 |
| MIMAT0014411 | cqu-miR-285-3p | 3 | _......_ | 8 | 75 |
| MIMAT0014353 | hsv2-miR-H10 | 7 | ......__ | 2 | 75 |
| MIMAT0014273 | aae-miR-285 | 3 | _......_ | 8 | 75 |
| MIMAT0014227 | aae-miR-998 | 3 | _......_ | 8 | 75 |
| MIMAT0013245 | eca-miR-767-5p | 2 | _......_ | 7 | 75 |
| MIMAT0013122 | eca-miR-876-3p | 8 | __...... | 3 | 75 |
| MIMAT0012985 | eca-miR-1905c | 1 | __...... | 6 | 75 |
| MIMAT0012964 | eca-miR-29c | 3 | _......_ | 8 | 75 |
| MIMAT0012959 | eca-miR-197 | 3 | __...... | 8 | 75 |
| MIMAT0012941 | eca-miR-29b | 3 | _......_ | 8 | 75 |
| MIMAT0012940 | eca-miR-29a | 3 | _......_ | 8 | 75 |
| MIMAT0012897 | eca-miR-1905a | 1 | __...... | 6 | 75 |
| MIMAT0012773 | mmu-miR-767 | 2 | _......_ | 7 | 75 |
| MIMAT0012716 | hvt-miR-H5-5p | 8 | _......_ | 3 | 75 |
| MIMAT0013603 | bmo-miR-998 | 3 | _......_ | 8 | 75 |
| MIMAT0012695 | isc-miR-285 | 3 | _......_ | 8 | 75 |
| MIMAT0012656 | dpu-miR-285 | 3 | _......_ | 8 | 75 |
| MIMAT0012454 | dsi-miR-995-3p | 3 | _......_ | 8 | 75 |
| MIMAT0012272 | dps-miR-995-3p | 3 | _......_ | 8 | 75 |
| MIMAT0011515 | crm-miR-83 | 3 | _......_ | 8 | 75 |
| MIMAT0011508 | crm-miR-49 | 3 | _......_ | 8 | 75 |
| MIMAT0011163 | hsa-miR-548q | 8 | _......_ | 3 | 75 |
| MIMAT0010069 | osa-miR2102-3p | 8 | _......_ | 3 | 75 |
| MIMAT0009656 | spu-miR-29a | 3 | _......_ | 8 | 75 |
| MIMAT0009613 | sko-miR-29b-3p | 3 | _......_ | 8 | 75 |
| MIMAT0009612 | sko-miR-29a | 3 | _......_ | 8 | 75 |
| MIMAT0009565 | lgi-miR-29 | 3 | _......_ | 8 | 75 |
| MIMAT0009514 | cte-miR-29b | 3 | _......_ | 8 | 75 |
| MIMAT0009513 | cte-miR-29a | 3 | _......_ | 8 | 75 |
| MIMAT0009472 | bfl-miR-29b-3p | 2 | _......_ | 7 | 75 |
| MIMAT0009471 | bfl-miR-29a-3p | 3 | _......_ | 8 | 75 |
| MIMAT0009154 | bmo-miR-285 | 3 | _......_ | 8 | 75 |
| MIMAT0019136 | mmu-miR-1306-5p | 1 | __...... | 6 | 75 |
| MIMAT0009375 | bta-miR-767 | 2 | _......_ | 7 | 75 |
| MIMAT0009275 | bta-miR-29d-3p | 3 | _......_ | 8 | 75 |
| MIMAT0009257 | bta-miR-197 | 3 | __...... | 8 | 75 |
| MIMAT0009088 | dya-miR-285 | 3 | _......_ | 8 | 75 |
| MIMAT0008984 | dwi-miR-285 | 3 | _......_ | 8 | 75 |
| MIMAT0008969 | dvi-miR-285-3p | 3 | _......_ | 8 | 75 |
| MIMAT0008888 | dsi-miR-285 | 3 | _......_ | 8 | 75 |
| MIMAT0008809 | dse-miR-285 | 3 | _......_ | 8 | 75 |
| MIMAT0008651 | dmo-miR-285 | 3 | _......_ | 8 | 75 |
| MIMAT0008581 | dgr-miR-285 | 3 | _......_ | 8 | 75 |
| MIMAT0008514 | der-miR-285 | 3 | _......_ | 8 | 75 |
| MIMAT0008419 | dan-miR-285 | 3 | _......_ | 8 | 75 |
| MIMAT0008082 | ptr-miR-29c | 3 | _......_ | 8 | 75 |
| MIMAT0006705 | cfa-miR-29c | 3 | _......_ | 8 | 75 |
| MIMAT0006698 | cfa-miR-197 | 3 | __...... | 8 | 75 |
| MIMAT0006626 | cfa-miR-29a | 3 | _......_ | 8 | 75 |
| MIMAT0006625 | cfa-miR-29b | 3 | _......_ | 8 | 75 |
| MIMAT0006510 | mml-miR-767-5p | 2 | _......_ | 7 | 75 |
| MIMAT0006230 | mml-miR-197-3p | 3 | __...... | 8 | 75 |
| MIMAT0006169 | mml-miR-29c-3p | 3 | _......_ | 8 | 75 |
| MIMAT0006168 | mml-miR-29b-3p | 3 | _......_ | 8 | 75 |
| MIMAT0007410 | gga-miR-1553-3p | 7 | __...... | 2 | 75 |
| MIMAT0006809 | oan-miR-29b-3p | 3 | _......_ | 8 | 75 |
| MIMAT0006807 | oan-miR-29a-3p | 3 | _......_ | 8 | 75 |
| MIMAT0005419 | cre-miR1164 | 6 | _......_ | 1 | 75 |
| MIMAT0005146 | ppt-miR1038-5p | 8 | ......__ | 3 | 75 |
| MIMAT0004464 | mdv2-miR-M21-3p | 3 | _......_ | 8 | 75 |
| MIMAT0005518 | dme-miR-998-3p | 3 | _......_ | 8 | 75 |
| MIMAT0005514 | dme-miR-995-3p | 3 | _......_ | 8 | 75 |
| MIMAT0004427 | ame-miR-29b | 3 | _......_ | 8 | 75 |
| MIMAT0004164 | mdo-miR-29a-3p | 3 | _......_ | 8 | 75 |
| MIMAT0004163 | mdo-miR-29b-3p | 3 | _......_ | 8 | 75 |
| MIMAT0003978 | sme-miR-746-3p | 3 | _......_ | 8 | 75 |
| MIMAT0003829 | bta-miR-29c | 3 | _......_ | 8 | 75 |
| MIMAT0003828 | bta-miR-29b | 3 | _......_ | 8 | 75 |
| MIMAT0003677 | xtr-miR-29c-3p | 3 | _......_ | 8 | 75 |
| MIMAT0003656 | xtr-miR-29a | 3 | _......_ | 8 | 75 |
| MIMAT0003573 | xtr-miR-29b | 3 | _......_ | 8 | 75 |
| MIMAT0003572 | xtr-miR-29d | 3 | _......_ | 8 | 75 |
| MIMAT0003882 | hsa-miR-767-5p | 2 | _......_ | 7 | 75 |
| MIMAT0003431 | rlcv-miR-rL1-4-3p | 1 | __...... | 6 | 75 |
| MIMAT0003429 | rlcv-miR-rL1-3 | 2 | ......__ | 7 | 75 |
| MIMAT0003261 | hsa-miR-593-5p | 3 | _......_ | 8 | 75 |
| MIMAT0003056 | tni-miR-29b | 3 | _......_ | 8 | 75 |
| MIMAT0003055 | fru-miR-29b | 3 | _......_ | 8 | 75 |
| MIMAT0003054 | tni-miR-29a | 3 | _......_ | 8 | 75 |
| MIMAT0003053 | fru-miR-29a | 3 | _......_ | 8 | 75 |
| MIMAT0002604 | ppa-miR-197 | 3 | __...... | 8 | 75 |
| MIMAT0002603 | age-miR-197 | 3 | __...... | 8 | 75 |
| MIMAT0002602 | mne-miR-197 | 3 | __...... | 8 | 75 |
| MIMAT0002601 | ppy-miR-197 | 3 | __...... | 8 | 75 |
| MIMAT0002600 | ptr-miR-197 | 3 | __...... | 8 | 75 |
| MIMAT0026591 | mml-miR-224-3p | 7 | _......_ | 2 | 75 |
| MIMAT0002441 | mne-miR-29b | 3 | _......_ | 8 | 75 |
| MIMAT0002440 | sla-miR-29b | 3 | _......_ | 8 | 75 |
| MIMAT0002439 | ppa-miR-29b | 3 | _......_ | 8 | 75 |
| MIMAT0002438 | age-miR-29b | 3 | _......_ | 8 | 75 |
| MIMAT0002437 | lla-miR-29b | 3 | _......_ | 8 | 75 |
| MIMAT0002436 | ggo-miR-29b | 3 | _......_ | 8 | 75 |
| MIMAT0002435 | ptr-miR-29b | 3 | _......_ | 8 | 75 |
| MIMAT0002434 | ppy-miR-29b | 3 | _......_ | 8 | 75 |
| MIMAT0002166 | ssc-miR-29c | 3 | _......_ | 8 | 75 |
| MIMAT0002137 | ssc-miR-29b | 3 | _......_ | 8 | 75 |
| MIMAT0001802 | dre-miR-29a | 3 | _......_ | 8 | 75 |
| MIMAT0001801 | dre-miR-29b | 3 | _......_ | 8 | 75 |
| MIMAT0015158 | zma-miR172c-5p | 3 | _......_ | 8 | 75 |
| MIMAT0015157 | zma-miR172b-5p | 3 | _......_ | 8 | 75 |
| MIMAT0015156 | zma-miR172d-5p | 3 | _......_ | 8 | 75 |
| MIMAT0001295 | cbr-miR-83 | 3 | _......_ | 8 | 75 |
| MIMAT0001249 | dps-miR-285 | 3 | _......_ | 8 | 75 |
| MIMAT0001183 | gga-miR-29c-3p | 3 | _......_ | 8 | 75 |
| MIMAT0001097 | gga-miR-29b-3p | 3 | _......_ | 8 | 75 |
| MIMAT0001096 | gga-miR-29a-3p | 3 | _......_ | 8 | 75 |
| MIMAT0000803 | rno-miR-29c-3p | 3 | _......_ | 8 | 75 |
| MIMAT0000802 | rno-miR-29a-3p | 3 | _......_ | 8 | 75 |
| MIMAT0000801 | rno-miR-29b-3p | 3 | _......_ | 8 | 75 |
| MIMAT0031894 | cel-miR-354-5p | 6 | ......__ | 1 | 75 |
| MIMAT0000681 | hsa-miR-29c-3p | 3 | _......_ | 8 | 75 |
| MIMAT0000536 | mmu-miR-29c-3p | 3 | _......_ | 8 | 75 |
| MIMAT0000535 | mmu-miR-29a-3p | 3 | _......_ | 8 | 75 |
| MIMAT0000474 | cbr-miR-49 | 3 | _......_ | 8 | 75 |
| MIMAT0000356 | dme-miR-285-3p | 3 | _......_ | 8 | 75 |
| MIMAT0000227 | hsa-miR-197-3p | 3 | __...... | 8 | 75 |
| MIMAT0000127 | mmu-miR-29b-3p | 3 | _......_ | 8 | 75 |
| MIMAT0000100 | hsa-miR-29b-3p | 3 | _......_ | 8 | 75 |
| MIMAT0000086 | hsa-miR-29a-3p | 3 | _......_ | 8 | 75 |
| MIMAT0000056 | cel-miR-83-3p | 3 | _......_ | 8 | 75 |
| MIMAT0000020 | cel-miR-49-3p | 3 | _......_ | 8 | 75 |
