| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | cgcaggg | 7 | ||
| MIMAT0031658 | bbe-miR-252b-3p | 7 | ....... | 1 | 100 |
| MIMAT0028575 | mdo-miR-7295-3p | 7 | ....... | 1 | 100 |
| MIMAT0027574 | hsa-miR-6836-5p | 1 | ....... | 7 | 100 |
| MIMAT0025073 | rno-miR-6332 | 1 | ....... | 7 | 100 |
| MIMAT0015590 | bmo-miR-3389-3p | 7 | ....... | 1 | 100 |
| MIMAT0012710 | hvt-miR-H1 | 2 | ....... | 8 | 100 |
| MIMAT0013630 | bmo-miR-2758-3p | 7 | ....... | 1 | 100 |
| MIMAT0019151 | bfl-miR-252b-3p | 7 | ....... | 1 | 100 |
| MIMAT0007883 | hsa-miR-1909-3p | 1 | ....... | 7 | 100 |
| MIMAT0036814 | oha-miR-204-2-3p | 1 | _...... | 6 | 85 |
| MIMAT0036084 | chi-miR-2331 | 7 | _...... | 2 | 85 |
| MIMAT0035842 | bra-miR391-5p | 3 | ......_ | 8 | 85 |
| MIMAT0034739 | eca-miR-9162 | 6 | _...... | 1 | 85 |
| MIMAT0034564 | eca-miR-9022 | 3 | _...... | 8 | 85 |
| MIMAT0034531 | eca-miR-8993 | 3 | _...... | 8 | 85 |
| MIMAT0032795 | cel-miR-8191-5p | 7 | _...... | 2 | 85 |
| MIMAT0032489 | ssa-miR-204-3p | 1 | _...... | 6 | 85 |
| MIMAT0031274 | stu-miR4376-5p | 3 | ......_ | 8 | 85 |
| MIMAT0031192 | stu-miR8006-3p | 8 | _...... | 3 | 85 |
| MIMAT0030201 | bdi-miR7733-3p | 6 | ......_ | 1 | 85 |
| MIMAT0029664 | cbn-miR-789a | 6 | _...... | 1 | 85 |
| MIMAT0028724 | mdo-miR-7356-5p | 8 | _...... | 3 | 85 |
| MIMAT0028404 | mmu-miR-7218-5p | 2 | _...... | 7 | 85 |
| MIMAT0028350 | mml-miR-7195-5p | 1 | _...... | 6 | 85 |
| MIMAT0026019 | mdm-miR391 | 3 | ......_ | 8 | 85 |
| MIMAT0028038 | mmu-miR-7067-5p | 2 | _...... | 7 | 85 |
| MIMAT0027939 | mmu-miR-7017-3p | 7 | _...... | 2 | 85 |
| MIMAT0027904 | mmu-miR-7001-5p | 3 | _...... | 8 | 85 |
| MIMAT0027883 | mmu-miR-6990-3p | 8 | _...... | 3 | 85 |
| MIMAT0027687 | hsa-miR-6893-3p | 6 | _...... | 1 | 85 |
| MIMAT0027672 | hsa-miR-6886-5p | 3 | ......_ | 8 | 85 |
| MIMAT0027521 | hsa-miR-6810-3p | 8 | _...... | 3 | 85 |
| MIMAT0027503 | hsa-miR-6801-3p | 8 | _...... | 3 | 85 |
| MIMAT0027499 | hsa-miR-6799-3p | 8 | _...... | 3 | 85 |
| MIMAT0027405 | hsa-miR-6752-3p | 7 | _...... | 2 | 85 |
| MIMAT0025854 | hsa-miR-6722-3p | 2 | _...... | 7 | 85 |
| MIMAT0025757 | gga-miR-6656-5p | 2 | _...... | 7 | 85 |
| MIMAT0025476 | hsa-miR-6510-5p | 3 | _...... | 8 | 85 |
| MIMAT0025142 | mmu-miR-6392-3p | 3 | ......_ | 8 | 85 |
| MIMAT0024625 | mml-miR-6132 | 2 | _...... | 7 | 85 |
| MIMAT0024616 | hsa-miR-6132 | 2 | _...... | 7 | 85 |
| MIMAT0024606 | ptr-miR-6132 | 2 | _...... | 7 | 85 |
| MIMAT0024062 | ptr-miR-3193 | 8 | ......_ | 3 | 85 |
| MIMAT0023693 | hsa-miR-6068 | 6 | ......_ | 1 | 85 |
| MIMAT0019913 | hsa-miR-4763-3p | 3 | _...... | 8 | 85 |
| MIMAT0019235 | hsa-miR-4520-5p | 6 | ......_ | 1 | 85 |
| MIMAT0018280 | gma-miR4376-5p | 3 | ......_ | 8 | 85 |
| MIMAT0018706 | tca-miR-308-5p | 1 | ......_ | 6 | 85 |
| MIMAT0016155 | ppy-miR-1207-5p | 3 | _...... | 8 | 85 |
| MIMAT0017537 | aly-miR391-5p | 3 | ......_ | 8 | 85 |
| MIMAT0019214 | hsa-miR-3173-5p | 8 | _...... | 3 | 85 |
| MIMAT0011864 | bta-miR-2331-3p | 7 | _...... | 2 | 85 |
| MIMAT0011469 | cbr-miR-35d-5p | 1 | ......_ | 6 | 85 |
| MIMAT0007685 | gga-miR-1774 | 7 | _...... | 2 | 85 |
| MIMAT0006989 | oan-miR-155-3p | 7 | _...... | 2 | 85 |
| MIMAT0005871 | hsa-miR-1207-5p | 3 | _...... | 8 | 85 |
| MIMAT0005543 | mcmv-miR-M23-1-3p | 8 | ......_ | 3 | 85 |
| MIMAT0004291 | cbr-miR-789 | 7 | _...... | 2 | 85 |
| MIMAT0004224 | cel-miR-789-3p | 7 | _...... | 2 | 85 |
| MIMAT0000933 | ath-miR391-5p | 3 | ......_ | 8 | 85 |
| MIMAT0017039 | mmu-miR-346-3p | 3 | _...... | 8 | 85 |
| MIMAT0022694 | hsa-miR-211-3p | 1 | _...... | 6 | 85 |
