| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | cgccgcg | 7 | ||
| MIMAT0035712 | bhv5-miR-B8 | 7 | ....... | 1 | 100 |
| MIMAT0031415 | mmu-miR-8109 | 2 | ....... | 8 | 100 |
| MIMAT0027639 | hsa-miR-6869-3p | 1 | ....... | 7 | 100 |
| MIMAT0005539 | mcmv-miR-m01-4-3p | 1 | ....... | 7 | 100 |
| MIMAT0033770 | pxy-miR-8528b | 6 | ......_ | 1 | 85 |
| MIMAT0033753 | pxy-miR-8516 | 6 | ......_ | 1 | 85 |
| MIMAT0033748 | pxy-miR-8528a | 8 | ......_ | 3 | 85 |
| MIMAT0032854 | ppc-miR-235-5p | 3 | _...... | 8 | 85 |
| MIMAT0029540 | ipu-miR-7548 | 2 | _...... | 7 | 85 |
| MIMAT0026458 | hhv6b-miR-Ro6-2-5p | 1 | ......_ | 6 | 85 |
| MIMAT0021682 | sbi-miR5384 | 3 | ......_ | 8 | 85 |
| MIMAT0021011 | gma-miR4993 | 8 | ......_ | 3 | 85 |
| MIMAT0019011 | hsa-miR-4479 | 8 | _...... | 3 | 85 |
| MIMAT0018994 | hsa-miR-4467 | 8 | ......_ | 3 | 85 |
| MIMAT0018068 | hsa-miR-3648 | 2 | _...... | 7 | 85 |
| MIMAT0016913 | hsa-miR-4285 | 6 | ......_ | 1 | 85 |
| MIMAT0017782 | esi-miR3451-3p | 7 | _...... | 2 | 85 |
| MIMAT0013844 | bta-miR-2886 | 3 | ......_ | 8 | 85 |
| MIMAT0013770 | bmo-miR-2848 | 8 | _...... | 3 | 85 |
| MIMAT0011290 | dre-miR-2185-3p | 1 | _...... | 6 | 85 |
| MIMAT0010072 | osa-miR2104 | 6 | ......_ | 1 | 85 |
| MIMAT0007417 | gga-miR-1560-5p | 6 | ......_ | 1 | 85 |
| MIMAT0009178 | oan-miR-1421i-3-3p | 2 | _...... | 7 | 85 |
| MIMAT0009177 | oan-miR-1421i-2-3p | 2 | _...... | 7 | 85 |
| MIMAT0007233 | oan-miR-1413-3p | 2 | _...... | 7 | 85 |
