| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | cgcggaaa | 8 | ||
| MIMAT0004413 | rrv-miR-rR1-6-5p | 1 | ........ | 8 | 100 |
| MIMAT0033659 | sma-miR-8470-5p | 1 | ......._ | 7 | 87 |
| MIMAT0029957 | osa-miR7693-5p | 8 | _....... | 2 | 87 |
| MIMAT0029018 | oan-miR-7434-5p | 8 | _....... | 2 | 87 |
| MIMAT0018563 | ame-miR-3784 | 2 | ......._ | 8 | 87 |
| MIMAT0016137 | ppy-miR-937 | 7 | ......._ | 1 | 87 |
| MIMAT0013861 | bta-miR-2903 | 7 | ......._ | 1 | 87 |
| MIMAT0020171 | dme-miR-4955-5p | 1 | ......g. | 8 | 87 |
| MIMAT0018514 | ame-miR-3746 | 1 | ......g. | 8 | 87 |
| MIMAT0036482 | tch-miR-9771c | 3 | __...... | 8 | 75 |
| MIMAT0035531 | bdi-miR2118a | 6 | __...... | 1 | 75 |
| MIMAT0035254 | gsa-miR-1175-5p | 3 | __...... | 8 | 75 |
| MIMAT0034766 | eca-miR-9185 | 7 | ......__ | 2 | 75 |
| MIMAT0033949 | atr-miR8558b | 6 | __...... | 1 | 75 |
| MIMAT0033830 | atr-miR8558a | 6 | __...... | 1 | 75 |
| MIMAT0033225 | ppc-miR-8340-5p | 3 | ......__ | 8 | 75 |
| MIMAT0030862 | stu-miR7988 | 3 | __...... | 8 | 75 |
| MIMAT0030744 | prd-miR-7942-5p | 3 | ......__ | 8 | 75 |
| MIMAT0030742 | prd-miR-7941-5p | 7 | ......__ | 2 | 75 |
| MIMAT0029070 | gga-miR-7458-5p | 3 | _......_ | 8 | 75 |
| MIMAT0028621 | mdo-miR-7311-3p | 6 | ......__ | 1 | 75 |
| MIMAT0028265 | mml-miR-1180-3p | 6 | __...... | 1 | 75 |
| MIMAT0028185 | dev-miR-D12-3p | 7 | ......__ | 2 | 75 |
| MIMAT0028144 | ssc-miR-7134-3p | 3 | _......_ | 8 | 75 |
| MIMAT0026368 | bma-miR-5869 | 6 | _......_ | 1 | 75 |
| MIMAT0027924 | mmu-miR-7010-5p | 1 | __...... | 6 | 75 |
| MIMAT0027600 | hsa-miR-6850-5p | 3 | _......_ | 8 | 75 |
| MIMAT0025566 | bta-miR-6530 | 1 | ......__ | 6 | 75 |
| MIMAT0025278 | ptc-miR482c-3p | 8 | __...... | 3 | 75 |
| MIMAT0027272 | ppe-miR482a-3p | 6 | __...... | 1 | 75 |
| MIMAT0024598 | hsa-miR-6125 | 1 | _......_ | 6 | 75 |
| MIMAT0024214 | ggo-miR-1180 | 6 | __...... | 1 | 75 |
| MIMAT0023709 | hsa-miR-6084 | 6 | _......_ | 1 | 75 |
| MIMAT0023273 | osa-miR812u | 2 | __...... | 7 | 75 |
| MIMAT0023272 | osa-miR812t | 2 | __...... | 7 | 75 |
| MIMAT0022824 | sha-miR-1549 | 6 | _......_ | 1 | 75 |
| MIMAT0022682 | hvsa-miR-HSUR5-5p | 6 | ......__ | 1 | 75 |
| MIMAT0022016 | aca-miR-5403 | 2 | __...... | 7 | 75 |
| MIMAT0020157 | dme-miR-4947-5p | 7 | _......_ | 2 | 75 |
| MIMAT0019680 | osa-miR812n-3p | 2 | __...... | 7 | 75 |
| MIMAT0019613 | pma-miR-4580 | 8 | ......__ | 3 | 75 |
| MIMAT0018316 | gma-miR4400 | 3 | __...... | 8 | 75 |
| MIMAT0018040 | vvi-miR3634-3p | 6 | __...... | 1 | 75 |
| MIMAT0016312 | sja-miR-3503 | 2 | _......_ | 7 | 75 |
| MIMAT0016145 | ppy-miR-1180 | 6 | __...... | 1 | 75 |
| MIMAT0017788 | esi-miR3452-3p | 6 | _......_ | 1 | 75 |
| MIMAT0013020 | eca-miR-1180 | 6 | __...... | 1 | 75 |
| MIMAT0012821 | ptr-miR-718 | 7 | _......_ | 2 | 75 |
| MIMAT0012735 | hsa-miR-718 | 7 | _......_ | 2 | 75 |
| MIMAT0012438 | dsi-miR-967-3p | 8 | __...... | 3 | 75 |
| MIMAT0011406 | sme-miR-2147d-5p | 1 | __...... | 6 | 75 |
| MIMAT0011270 | sme-miR-2147c | 1 | __...... | 6 | 75 |
| MIMAT0011265 | sme-miR-2147b | 1 | __...... | 6 | 75 |
| MIMAT0009939 | cfa-miR-718 | 7 | _......_ | 2 | 75 |
| MIMAT0008344 | ptr-miR-937 | 7 | ......__ | 2 | 75 |
| MIMAT0006149 | mdo-miR-1549-3p | 6 | _......_ | 1 | 75 |
| MIMAT0005961 | osa-miR1427 | 2 | _......_ | 7 | 75 |
| MIMAT0007032 | oan-miR-1367-3p | 3 | _......_ | 8 | 75 |
| MIMAT0005825 | hsa-miR-1180-3p | 6 | __...... | 1 | 75 |
| MIMAT0004980 | hsa-miR-937-3p | 7 | ......__ | 2 | 75 |
| MIMAT0003514 | mmu-miR-718 | 7 | _......_ | 2 | 75 |
