| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | cgcggtc | 7 | ||
| MIMAT0032960 | ppc-miR-8248-5p | 1 | ....... | 7 | 100 |
| MIMAT0019658 | pma-miR-4624 | 2 | ....... | 8 | 100 |
| MIMAT0002194 | kshv-miR-K12-3-3p | 2 | ....... | 8 | 100 |
| MIMAT0037137 | ata-miR169c-3p | 2 | _...... | 7 | 85 |
| MIMAT0034288 | cfa-miR-8798 | 2 | _...... | 7 | 85 |
| MIMAT0030263 | bdi-miR7758-3p | 3 | _...... | 8 | 85 |
| MIMAT0029563 | ipu-miR-7564 | 6 | ......_ | 1 | 85 |
| MIMAT0029561 | ipu-miR-7563b | 6 | ......_ | 1 | 85 |
| MIMAT0028191 | dev-miR-D17-3p | 6 | _...... | 1 | 85 |
| MIMAT0019637 | pma-miR-4603 | 1 | ......_ | 6 | 85 |
| MIMAT0019581 | pma-miR-4549 | 8 | _...... | 3 | 85 |
| MIMAT0018631 | tca-miR-2765-3p | 3 | _...... | 8 | 85 |
| MIMAT0016610 | cin-miR-4061-5p | 3 | _...... | 8 | 85 |
| MIMAT0014260 | aae-miR-308-5p | 1 | ......_ | 6 | 85 |
| MIMAT0011490 | cbr-miR-64b | 8 | _...... | 3 | 85 |
| MIMAT0005560 | mcmv-miR-m108-2-5p.1 | 1 | _...... | 6 | 85 |
| MIMAT0001582 | hcmv-miR-US25-2-5p | 2 | _...... | 7 | 85 |
| MIMAT0026431 | sbi-miR169d-3p | 3 | _...... | 8 | 85 |
