| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | cgcgtgat | 8 | ||
| MIMAT0013965 | bhv1-miR-B4 | 1 | ........ | 8 | 100 |
| MIMAT0034653 | eca-miR-9106 | 7 | ......._ | 1 | 87 |
| MIMAT0031406 | mmu-miR-8102 | 7 | ......._ | 1 | 87 |
| MIMAT0030739 | prd-miR-7940a-3p | 7 | ......._ | 1 | 87 |
| MIMAT0018254 | gma-miR4387c | 2 | _....... | 8 | 87 |
| MIMAT0015068 | hsa-miR-3186-3p | 7 | ......._ | 1 | 87 |
| MIMAT0034613 | eca-miR-9068 | 3 | __...... | 8 | 75 |
| MIMAT0034579 | eca-miR-9037 | 6 | _......_ | 1 | 75 |
| MIMAT0034174 | gra-miR7494f | 2 | __...... | 7 | 75 |
| MIMAT0034173 | gra-miR7494e | 2 | __...... | 7 | 75 |
| MIMAT0034128 | gra-miR7492k | 1 | __...... | 6 | 75 |
| MIMAT0034127 | gra-miR7492j | 1 | __...... | 6 | 75 |
| MIMAT0034126 | gra-miR7492i | 1 | __...... | 6 | 75 |
| MIMAT0034125 | gra-miR7492h | 1 | __...... | 6 | 75 |
| MIMAT0034124 | gra-miR7492g | 1 | __...... | 6 | 75 |
| MIMAT0033870 | atr-miR8552d | 3 | __...... | 8 | 75 |
| MIMAT0033557 | sma-miR-8426-3p | 3 | __...... | 8 | 75 |
| MIMAT0033285 | ppc-miR-8364t-3p | 8 | __...... | 3 | 75 |
| MIMAT0030735 | prd-miR-7938-3p | 1 | __...... | 6 | 75 |
| MIMAT0029966 | mtr-miR2653d | 6 | _......_ | 1 | 75 |
| MIMAT0029962 | osa-miR7695-3p | 2 | __...... | 7 | 75 |
| MIMAT0027843 | mmu-miR-6970-3p | 6 | _......_ | 1 | 75 |
| MIMAT0024724 | nta-miR479b | 1 | __...... | 6 | 75 |
| MIMAT0024723 | nta-miR479a | 1 | __...... | 6 | 75 |
| MIMAT0023012 | bra-miR5715 | 2 | __...... | 7 | 75 |
| MIMAT0021268 | mtr-miR160f | 1 | _......_ | 6 | 75 |
| MIMAT0018253 | gma-miR4359b | 3 | ......__ | 8 | 75 |
| MIMAT0018511 | ame-miR-989 | 1 | __...... | 6 | 75 |
| MIMAT0016629 | cin-miR-4070-3p | 6 | ......__ | 1 | 75 |
| MIMAT0015612 | bmo-miR-3406-3p | 2 | ......__ | 7 | 75 |
| MIMAT0014338 | ghr-miR479 | 1 | __...... | 6 | 75 |
| MIMAT0015307 | bmo-miR-2843-2-3p | 3 | __...... | 8 | 75 |
| MIMAT0013438 | mtr-miR2653c | 6 | _......_ | 1 | 75 |
| MIMAT0013437 | mtr-miR2653b | 6 | _......_ | 1 | 75 |
| MIMAT0013436 | mtr-miR2653a | 6 | _......_ | 1 | 75 |
| MIMAT0012351 | dps-miR-2545a-3p | 7 | _......_ | 2 | 75 |
| MIMAT0012316 | dps-miR-2545b | 7 | _......_ | 2 | 75 |
| MIMAT0011785 | dme-miR-2279-3p | 8 | _......_ | 3 | 75 |
| MIMAT0032051 | dvi-miR-263a-3p | 1 | __...... | 6 | 75 |
| MIMAT0026901 | mml-miR-592-3p | 8 | __...... | 3 | 75 |
| MIMAT0007295 | gga-miR-1434 | 3 | _......_ | 8 | 75 |
| MIMAT0006872 | oan-miR-1341 | 3 | _......_ | 8 | 75 |
| MIMAT0015230 | bmo-miR-263a-3p | 1 | __...... | 6 | 75 |
| MIMAT0003490 | mmu-miR-700-3p | 6 | ......__ | 1 | 75 |
| MIMAT0017234 | mmu-miR-592-3p | 8 | __...... | 3 | 75 |
| MIMAT0020799 | dme-miR-263a-3p | 1 | __...... | 6 | 75 |
