| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | cgctcggg | 8 | ||
| MIMAT0029097 | gga-miR-7471-3p | 8 | ........ | 1 | 100 |
| MIMAT0028985 | oan-miR-7418-3p | 7 | ......._ | 1 | 87 |
| MIMAT0013648 | bmo-miR-375-5p | 8 | _....... | 2 | 87 |
| MIMAT0023545 | ame-miR-6003-5p | 1 | .a...... | 8 | 87 |
| MIMAT0036981 | tae-miR531 | 1 | ......__ | 6 | 75 |
| MIMAT0036525 | tch-miR-423-3p | 2 | _......_ | 7 | 75 |
| MIMAT0036221 | chi-miR-423-3p | 2 | _......_ | 7 | 75 |
| MIMAT0035361 | xtr-miR-9407 | 3 | ......__ | 8 | 75 |
| MIMAT0035195 | efu-miR-9368 | 7 | _......_ | 2 | 75 |
| MIMAT0034743 | eca-miR-9165 | 3 | ......__ | 8 | 75 |
| MIMAT0034384 | cfa-miR-8882 | 7 | _......_ | 2 | 75 |
| MIMAT0033875 | atr-miR8588 | 6 | _......_ | 1 | 75 |
| MIMAT0032919 | ppc-miR-8233-3p | 8 | __...... | 3 | 75 |
| MIMAT0031405 | mmu-miR-8101 | 8 | ......__ | 3 | 75 |
| MIMAT0030188 | bdi-miR7728-5p | 2 | _......_ | 7 | 75 |
| MIMAT0029899 | mmu-miR-7686-3p | 3 | _......_ | 8 | 75 |
| MIMAT0029815 | mmu-miR-7654-3p | 6 | ......__ | 1 | 75 |
| MIMAT0028269 | mml-miR-7167-3p | 1 | __...... | 6 | 75 |
| MIMAT0028268 | mml-miR-7167-5p | 3 | _......_ | 8 | 75 |
| MIMAT0028188 | dev-miR-D15-3p | 6 | ......__ | 1 | 75 |
| MIMAT0027834 | mmu-miR-6966-5p | 1 | __...... | 6 | 75 |
| MIMAT0027442 | hsa-miR-6771-5p | 1 | __...... | 6 | 75 |
| MIMAT0027355 | hsa-miR-6727-5p | 1 | __...... | 6 | 75 |
| MIMAT0025690 | gga-miR-6596-5p | 7 | _......_ | 2 | 75 |
| MIMAT0025498 | han-miR160a | 2 | _......_ | 7 | 75 |
| MIMAT0025314 | prv-miR-LLT10b | 6 | _......_ | 1 | 75 |
| MIMAT0025313 | prv-miR-LLT10a | 6 | _......_ | 1 | 75 |
| MIMAT0025260 | ptc-miR6424 | 1 | ......__ | 6 | 75 |
| MIMAT0025022 | hsv1-miR-H26 | 3 | _......_ | 8 | 75 |
| MIMAT0023988 | cgr-miR-615-3p | 7 | _......_ | 2 | 75 |
| MIMAT0023983 | cgr-miR-542-5p | 1 | __...... | 6 | 75 |
| MIMAT0023957 | cgr-miR-423-3p | 2 | _......_ | 7 | 75 |
| MIMAT0023034 | tur-miR-276-5p | 2 | _......_ | 7 | 75 |
| MIMAT0022117 | osa-miR5484 | 8 | _......_ | 3 | 75 |
| MIMAT0020595 | ssc-miR-615 | 7 | _......_ | 2 | 75 |
| MIMAT0020140 | cel-miR-4934 | 8 | _......_ | 3 | 75 |
| MIMAT0019887 | hsa-miR-4750-5p | 1 | __...... | 6 | 75 |
| MIMAT0019870 | hsa-miR-4740-3p | 7 | __...... | 2 | 75 |
| MIMAT0019643 | pma-miR-4609 | 3 | _......_ | 8 | 75 |
| MIMAT0019614 | pma-miR-4581 | 1 | _......_ | 6 | 75 |
| MIMAT0018191 | hsa-miR-3917 | 1 | _......_ | 6 | 75 |
| MIMAT0017808 | rno-miR-3550 | 6 | _......_ | 1 | 75 |
| MIMAT0016057 | ppy-miR-615-3p | 7 | _......_ | 2 | 75 |
| MIMAT0015883 | ppy-miR-423-3p | 2 | _......_ | 7 | 75 |
| MIMAT0015446 | bmo-miR-3262 | 3 | _......_ | 8 | 75 |
| MIMAT0014869 | mmu-miR-3080-3p | 3 | __...... | 8 | 75 |
| MIMAT0013881 | ssc-miR-423-3p | 2 | _......_ | 7 | 75 |
| MIMAT0013237 | eca-miR-542-5p | 1 | __...... | 6 | 75 |
| MIMAT0013040 | eca-miR-423-3p | 2 | _......_ | 7 | 75 |
| MIMAT0012977 | eca-miR-615-3p | 7 | _......_ | 2 | 75 |
| MIMAT0012857 | rno-miR-678 | 3 | __...... | 8 | 75 |
| MIMAT0011960 | bta-miR-2403 | 1 | __...... | 6 | 75 |
| MIMAT0011697 | ppc-miR-2263 | 3 | __...... | 8 | 75 |
| MIMAT0011568 | crm-miR-72-3p | 2 | _......_ | 7 | 75 |
| MIMAT0009952 | bta-miR-1225-3p | 6 | _......_ | 1 | 75 |
| MIMAT0008277 | ptr-miR-615 | 7 | _......_ | 2 | 75 |
| MIMAT0008142 | ptr-miR-423 | 2 | _......_ | 7 | 75 |
| MIMAT0007880 | mmu-miR-1901 | 2 | ......__ | 7 | 75 |
| MIMAT0007867 | mmu-miR-1895 | 8 | __...... | 3 | 75 |
| MIMAT0006466 | mml-miR-615-3p | 7 | _......_ | 2 | 75 |
| MIMAT0006322 | mml-miR-423-3p | 2 | _......_ | 7 | 75 |
| MIMAT0007524 | gga-miR-1648-5p | 3 | _......_ | 8 | 75 |
| MIMAT0007437 | gga-miR-1576 | 1 | __...... | 6 | 75 |
| MIMAT0006943 | oan-miR-1351-5p | 6 | _......_ | 1 | 75 |
| MIMAT0005313 | rno-miR-423-3p | 2 | _......_ | 7 | 75 |
| MIMAT0005211 | ppt-miR1079-5p | 8 | _......_ | 3 | 75 |
| MIMAT0003831 | bta-miR-423-3p | 3 | _......_ | 8 | 75 |
| MIMAT0003783 | mmu-miR-615-3p | 7 | _......_ | 2 | 75 |
| MIMAT0003454 | mmu-miR-423-3p | 2 | _......_ | 7 | 75 |
| MIMAT0003283 | hsa-miR-615-3p | 7 | _......_ | 2 | 75 |
| MIMAT0003178 | rno-miR-542-5p | 1 | __...... | 6 | 75 |
| MIMAT0003171 | mmu-miR-542-5p | 1 | __...... | 6 | 75 |
| MIMAT0001340 | hsa-miR-423-3p | 2 | _......_ | 7 | 75 |
