| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | cgctgag | 7 | ||
| MIMAT0032627 | ssa-miR-375-2-5p | 2 | ....... | 8 | 100 |
| MIMAT0012731 | iltv-miR-I6-3p | 2 | ....... | 8 | 100 |
| MIMAT0012280 | dps-miR-986-3p | 7 | ....... | 1 | 100 |
| MIMAT0036333 | ocu-miR-512b-5p | 7 | _...... | 2 | 85 |
| MIMAT0036331 | ocu-miR-512a-5p | 7 | _...... | 2 | 85 |
| MIMAT0035668 | bra-miR9557-3p | 1 | _...... | 6 | 85 |
| MIMAT0035549 | dvi-miR-1000-3p | 3 | _...... | 8 | 85 |
| MIMAT0035000 | efu-miR-9317 | 1 | _...... | 6 | 85 |
| MIMAT0034896 | efu-miR-9266 | 3 | _...... | 8 | 85 |
| MIMAT0034428 | cfa-miR-8908a-5p | 2 | _...... | 7 | 85 |
| MIMAT0034361 | cfa-miR-8864 | 1 | _...... | 6 | 85 |
| MIMAT0034359 | cfa-miR-8862 | 2 | _...... | 7 | 85 |
| MIMAT0034293 | cfa-miR-8803 | 6 | _...... | 1 | 85 |
| MIMAT0034110 | gra-miR7486j | 8 | ......_ | 3 | 85 |
| MIMAT0034006 | gra-miR8648 | 8 | ......_ | 3 | 85 |
| MIMAT0033683 | sma-miR-8481-5p | 1 | _...... | 6 | 85 |
| MIMAT0033249 | ppc-miR-8218b-3p | 6 | _...... | 1 | 85 |
| MIMAT0031004 | hsa-miR-8077 | 2 | _...... | 7 | 85 |
| MIMAT0031225 | stu-miR8046-3p | 1 | ......_ | 6 | 85 |
| MIMAT0029952 | bta-miR-7691 | 1 | _...... | 6 | 85 |
| MIMAT0029904 | mmu-miR-1258-5p | 2 | _...... | 7 | 85 |
| MIMAT0029572 | ipu-miR-7573 | 3 | _...... | 8 | 85 |
| MIMAT0029557 | ipu-miR-7558b | 2 | _...... | 7 | 85 |
| MIMAT0029554 | ipu-miR-7558a | 2 | _...... | 7 | 85 |
| MIMAT0028655 | mdo-miR-7326-3p | 7 | _...... | 2 | 85 |
| MIMAT0028230 | hsa-miR-7160-5p | 2 | _...... | 7 | 85 |
| MIMAT0028005 | mmu-miR-7050-3p | 7 | _...... | 2 | 85 |
| MIMAT0027736 | mmu-miR-6918-5p | 2 | _...... | 7 | 85 |
| MIMAT0027475 | hsa-miR-6787-3p | 7 | _...... | 2 | 85 |
| MIMAT0025399 | tgu-miR-1467-5p | 8 | _...... | 3 | 85 |
| MIMAT0027263 | pgi-miR6140c | 1 | _...... | 6 | 85 |
| MIMAT0022162 | osa-miR5527 | 7 | _...... | 2 | 85 |
| MIMAT0020576 | bdi-miR5067 | 6 | ......_ | 1 | 85 |
| MIMAT0020102 | bfl-miR-4866-3p | 7 | _...... | 2 | 85 |
| MIMAT0019735 | hsa-miR-4663 | 2 | _...... | 7 | 85 |
| MIMAT0019624 | pma-miR-4591 | 6 | ......_ | 1 | 85 |
| MIMAT0019607 | pma-miR-4574 | 1 | _...... | 6 | 85 |
| MIMAT0018314 | gma-miR4398 | 8 | ......_ | 3 | 85 |
| MIMAT0018809 | tca-miR-3863-3p | 6 | ......_ | 1 | 85 |
| MIMAT0016286 | sja-miR-3483-5p | 2 | _...... | 7 | 85 |
| MIMAT0017564 | aly-miR397b-3p | 6 | ......_ | 1 | 85 |
| MIMAT0015487 | bmo-miR-3298 | 2 | _...... | 7 | 85 |
| MIMAT0014623 | tgu-miR-2954-5p | 1 | _...... | 6 | 85 |
| MIMAT0013812 | osa-miR2865 | 6 | _...... | 1 | 85 |
| MIMAT0011872 | bta-miR-2338 | 3 | _...... | 8 | 85 |
| MIMAT0011809 | bta-miR-2300a-5p | 8 | _...... | 3 | 85 |
| MIMAT0019179 | tca-miR-970-5p | 8 | _...... | 3 | 85 |
| MIMAT0006371 | mml-miR-512-5p | 8 | _...... | 3 | 85 |
| MIMAT0007623 | gga-miR-1724 | 2 | _...... | 7 | 85 |
| MIMAT0007475 | gga-miR-1609 | 3 | _...... | 8 | 85 |
| MIMAT0007345 | gga-miR-1467-5p | 7 | _...... | 2 | 85 |
| MIMAT0007105 | oan-miR-1376-5p | 7 | _...... | 2 | 85 |
| MIMAT0006828 | oan-miR-1335 | 2 | _...... | 7 | 85 |
| MIMAT0017294 | rno-miR-883-5p | 2 | _...... | 7 | 85 |
| MIMAT0004848 | mmu-miR-883a-5p | 2 | _...... | 7 | 85 |
| MIMAT0004326 | ppt-miR319d-5p.2 | 3 | _...... | 8 | 85 |
| MIMAT0002822 | hsa-miR-512-5p | 8 | _...... | 3 | 85 |
