| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | cggctctg | 8 | ||
| MIMAT0031765 | hbv-miR-B3RC-3p | 1 | ........ | 8 | 100 |
| MIMAT0024132 | ggo-miR-760 | 1 | ........ | 8 | 100 |
| MIMAT0016104 | ppy-miR-760 | 1 | ........ | 8 | 100 |
| MIMAT0017632 | aly-miR845a-3p | 1 | ........ | 8 | 100 |
| MIMAT0012788 | mml-miR-760 | 1 | ........ | 8 | 100 |
| MIMAT0015303 | bmo-miR-306a-3p | 8 | ........ | 1 | 100 |
| MIMAT0022951 | bta-miR-760-3p | 1 | ........ | 8 | 100 |
| MIMAT0008319 | ptr-miR-760 | 1 | ........ | 8 | 100 |
| MIMAT0005337 | rno-miR-760-3p | 1 | ........ | 8 | 100 |
| MIMAT0004957 | hsa-miR-760 | 1 | ........ | 8 | 100 |
| MIMAT0004268 | ath-miR845a | 1 | ........ | 8 | 100 |
| MIMAT0003898 | mmu-miR-760-3p | 1 | ........ | 8 | 100 |
| MIMAT0036969 | bta-miR-1842 | 2 | _....... | 8 | 87 |
| MIMAT0028447 | mmu-miR-7239-3p | 2 | _....... | 8 | 87 |
| MIMAT0027384 | hsa-miR-6741-3p | 2 | ......._ | 8 | 87 |
| MIMAT0025788 | gga-miR-6683-3p | 8 | _....... | 2 | 87 |
| MIMAT0025233 | ptc-miR6432 | 1 | ......._ | 7 | 87 |
| MIMAT0021366 | mtr-miR5295d | 2 | ......._ | 8 | 87 |
| MIMAT0021365 | mtr-miR5295c | 2 | ......._ | 8 | 87 |
| MIMAT0021364 | mtr-miR5295b | 2 | ......._ | 8 | 87 |
| MIMAT0021363 | mtr-miR5295a | 2 | ......._ | 8 | 87 |
| MIMAT0015439 | bmo-miR-3256 | 2 | _....... | 8 | 87 |
| MIMAT0013055 | eca-miR-1842 | 2 | _....... | 8 | 87 |
| MIMAT0011473 | cbr-miR-235b-5p | 2 | _....... | 8 | 87 |
| MIMAT0006701 | cfa-miR-1842 | 2 | _....... | 8 | 87 |
| MIMAT0006583 | vvi-miR845e | 2 | _....... | 8 | 87 |
| MIMAT0006582 | vvi-miR845d | 2 | _....... | 8 | 87 |
| MIMAT0006581 | vvi-miR845c | 2 | _....... | 8 | 87 |
| MIMAT0032839 | cel-miR-2217b-1-5p | 8 | .c...... | 1 | 87 |
| MIMAT0012416 | dps-miR-2573-5p | 8 | ......c. | 1 | 87 |
| MIMAT0011952 | bta-miR-2397-3p | 8 | .t...... | 1 | 87 |
| MIMAT0010053 | osa-miR2094-3p | 8 | .a...... | 1 | 87 |
| MIMAT0007524 | gga-miR-1648-5p | 1 | ......g. | 8 | 87 |
| MIMAT0037191 | ata-miR171a-3p | 7 | ......__ | 2 | 75 |
| MIMAT0037101 | ata-miR171c-3p | 8 | ......__ | 3 | 75 |
| MIMAT0037030 | ssc-miR-9812-3p | 2 | __...... | 7 | 75 |
| MIMAT0036884 | oha-miR-301a-5p | 1 | __...... | 6 | 75 |
| MIMAT0036882 | oha-miR-301b-5p | 1 | __...... | 6 | 75 |
| MIMAT0036118 | chi-miR-301a-5p | 1 | __...... | 6 | 75 |
| MIMAT0035529 | bdi-miR845 | 2 | __...... | 7 | 75 |
| MIMAT0035519 | bdi-miR171f | 7 | ......__ | 2 | 75 |
| MIMAT0035482 | sly-miR171e | 8 | ......__ | 3 | 75 |
| MIMAT0035137 | efu-miR-1842 | 3 | _......_ | 8 | 75 |
| MIMAT0035009 | efu-miR-9319 | 8 | __...... | 3 | 75 |
| MIMAT0034764 | eca-miR-9183 | 2 | ......__ | 7 | 75 |
| MIMAT0034752 | eca-miR-9172 | 1 | __...... | 6 | 75 |
| MIMAT0034512 | eca-miR-8975 | 8 | __...... | 3 | 75 |
| MIMAT0034077 | gra-miR8696 | 2 | _......_ | 7 | 75 |
| MIMAT0033925 | atr-miR171b | 8 | ......__ | 3 | 75 |
| MIMAT0033821 | bta-miR-8550 | 3 | _......_ | 8 | 75 |
| MIMAT0033158 | ppc-miR-8364c-3p | 7 | _......_ | 2 | 75 |
| MIMAT0033101 | ppc-miR-8294-5p | 3 | ......__ | 8 | 75 |
| MIMAT0033022 | ppc-miR-8268-5p | 1 | _......_ | 6 | 75 |
| MIMAT0032962 | ppc-miR-8249-5p | 3 | ......__ | 8 | 75 |
| MIMAT0032843 | cel-miR-8211-3p | 2 | ......__ | 7 | 75 |
| MIMAT0031705 | bbe-miR-4888-5p | 8 | __...... | 3 | 75 |
| MIMAT0031467 | ppe-miR171d-3p | 7 | ......__ | 2 | 75 |
| MIMAT0031397 | mmu-miR-1291 | 3 | _......_ | 8 | 75 |
| MIMAT0031311 | stu-miR479 | 7 | ......__ | 2 | 75 |
| MIMAT0031302 | stu-miR171d-3p | 8 | ......__ | 3 | 75 |
| MIMAT0031248 | stu-miR171b-3p | 8 | ......__ | 3 | 75 |
| MIMAT0030984 | hsa-miR-8057 | 3 | _......_ | 8 | 75 |
| MIMAT0030635 | prd-miR-7909-3p | 8 | __...... | 3 | 75 |
| MIMAT0030582 | prd-miR-7896-5p | 8 | ......__ | 3 | 75 |
| MIMAT0030321 | bdi-miR7783-3p | 2 | __...... | 7 | 75 |
| MIMAT0029909 | mmu-miR-7689-3p | 8 | _......_ | 3 | 75 |
| MIMAT0029865 | mmu-miR-292b-3p | 7 | _......_ | 2 | 75 |
| MIMAT0029824 | mmu-miR-7659-5p | 8 | ......__ | 3 | 75 |
| MIMAT0029318 | lja-miR171d-5p | 8 | ......__ | 3 | 75 |
| MIMAT0029316 | lja-miR171c | 7 | ......__ | 2 | 75 |
| MIMAT0029240 | mes-miR171d | 8 | ......__ | 3 | 75 |
| MIMAT0029239 | mes-miR171c | 8 | ......__ | 3 | 75 |
| MIMAT0029238 | mes-miR171b | 8 | ......__ | 3 | 75 |
| MIMAT0028966 | oan-miR-7410-5p | 1 | __...... | 6 | 75 |
| MIMAT0028948 | oan-miR-7403-5p | 7 | __...... | 2 | 75 |
| MIMAT0031091 | mdo-miR-7331-2-3p | 1 | _......_ | 6 | 75 |
| MIMAT0028669 | mdo-miR-7331-1-3p | 1 | _......_ | 6 | 75 |
| MIMAT0028399 | mmu-miR-7215-3p | 2 | __...... | 7 | 75 |
| MIMAT0026123 | cme-miR171b | 8 | ......__ | 3 | 75 |
| MIMAT0026122 | cme-miR171d | 8 | ......__ | 3 | 75 |
| MIMAT0026101 | cme-miR1863 | 2 | __...... | 7 | 75 |
| MIMAT0026085 | cme-miR171i | 8 | ......__ | 3 | 75 |
| MIMAT0026084 | cme-miR845 | 3 | __...... | 8 | 75 |
| MIMAT0025951 | mdm-miR171n | 8 | ......__ | 3 | 75 |
| MIMAT0025950 | mdm-miR171m | 8 | ......__ | 3 | 75 |
| MIMAT0025949 | mdm-miR171l | 8 | ......__ | 3 | 75 |
| MIMAT0025948 | mdm-miR171k | 8 | ......__ | 3 | 75 |
| MIMAT0025947 | mdm-miR171j | 8 | ......__ | 3 | 75 |
| MIMAT0025946 | mdm-miR171i | 7 | ......__ | 2 | 75 |
| MIMAT0025943 | mdm-miR171f | 8 | ......__ | 3 | 75 |
| MIMAT0025939 | mdm-miR171b | 8 | ......__ | 3 | 75 |
| MIMAT0025938 | mdm-miR171a | 8 | ......__ | 3 | 75 |
| MIMAT0028047 | mmu-miR-7070-3p | 3 | _......_ | 8 | 75 |
| MIMAT0028009 | mmu-miR-7052-3p | 1 | __...... | 6 | 75 |
| MIMAT0027545 | hsa-miR-6822-3p | 2 | _......_ | 7 | 75 |
| MIMAT0027511 | hsa-miR-6805-3p | 3 | __...... | 8 | 75 |
| MIMAT0025813 | gga-miR-6703-3p | 6 | __...... | 1 | 75 |
| MIMAT0025744 | gga-miR-6647-5p | 2 | __...... | 7 | 75 |
| MIMAT0025712 | gga-miR-6616-5p | 1 | __...... | 6 | 75 |
| MIMAT0025459 | hsa-miR-6501-3p | 7 | __...... | 2 | 75 |
| MIMAT0025345 | pde-miR952b | 8 | __...... | 3 | 75 |
| MIMAT0025344 | pde-miR952a | 8 | __...... | 3 | 75 |
| MIMAT0025321 | bmo-miR-6497-5p | 1 | __...... | 6 | 75 |
| MIMAT0027309 | ppe-miR171b | 8 | ......__ | 3 | 75 |
| MIMAT0027285 | ppe-miR171h | 8 | ......__ | 3 | 75 |
| MIMAT0024824 | hvu-miR6198 | 1 | __...... | 6 | 75 |
| MIMAT0024687 | nta-miR171b | 8 | ......__ | 3 | 75 |
| MIMAT0027224 | lus-miR171i | 8 | ......__ | 3 | 75 |
| MIMAT0027219 | lus-miR171h | 8 | ......__ | 3 | 75 |
| MIMAT0024368 | ppy-miR-3155a | 3 | _......_ | 8 | 75 |
| MIMAT0023890 | cgr-miR-301a-5p | 1 | __...... | 6 | 75 |
| MIMAT0023236 | gma-miR171t | 8 | ......__ | 3 | 75 |
| MIMAT0023234 | gma-miR171s | 7 | ......__ | 2 | 75 |
| MIMAT0023229 | gma-miR171r | 7 | ......__ | 2 | 75 |
| MIMAT0023215 | gma-miR171q | 8 | ......__ | 3 | 75 |
| MIMAT0023208 | gma-miR171p | 8 | ......__ | 3 | 75 |
| MIMAT0023204 | gma-miR171o-3p | 8 | ......__ | 3 | 75 |
| MIMAT0023202 | gma-miR171n | 8 | ......__ | 3 | 75 |
| MIMAT0023200 | gma-miR171m | 8 | ......__ | 3 | 75 |
| MIMAT0023132 | mtr-miR171g | 7 | ......__ | 2 | 75 |
| MIMAT0022620 | ola-miR-301a-5p | 1 | __...... | 6 | 75 |
| MIMAT0022610 | ola-miR-301b-5p | 1 | __...... | 6 | 75 |
| MIMAT0022513 | ssl-miR171b | 8 | ......__ | 3 | 75 |
| MIMAT0022512 | ssl-miR171a | 8 | ......__ | 3 | 75 |
| MIMAT0022483 | hsa-miR-5691 | 3 | __...... | 8 | 75 |
| MIMAT0022248 | sbi-miR5568a | 6 | __...... | 1 | 75 |
| MIMAT0021917 | aca-miR-301b-5p | 1 | __...... | 6 | 75 |
| MIMAT0021915 | aca-miR-301a-5p | 1 | __...... | 6 | 75 |
| MIMAT0022995 | gma-miR171k-3p | 8 | ......__ | 3 | 75 |
| MIMAT0021269 | mtr-miR171h | 7 | ......__ | 2 | 75 |
| MIMAT0022983 | gma-miR169i-5p | 7 | ......__ | 2 | 75 |
| MIMAT0021057 | gma-miR171i-3p | 8 | ......__ | 3 | 75 |
| MIMAT0021052 | gma-miR5032 | 6 | _......_ | 1 | 75 |
| MIMAT0020475 | bfl-miR-4888 | 8 | __...... | 3 | 75 |
| MIMAT0020470 | bfl-miR-4884 | 2 | __...... | 7 | 75 |
| MIMAT0019557 | pma-miR-497-3p | 7 | __...... | 2 | 75 |
| MIMAT0019080 | hsa-miR-4537 | 7 | ......__ | 2 | 75 |
| MIMAT0018456 | csi-miR171a | 8 | ......__ | 3 | 75 |
| MIMAT0018455 | csi-miR171b | 7 | ......__ | 2 | 75 |
| MIMAT0018341 | gma-miR394a-3p | 2 | __...... | 7 | 75 |
| MIMAT0022972 | gma-miR171c-3p | 8 | ......__ | 3 | 75 |
| MIMAT0018227 | tae-miR171b | 8 | ......__ | 3 | 75 |
| MIMAT0018163 | pab-miR1863 | 2 | __...... | 7 | 75 |
| MIMAT0017980 | ssc-miR-4339 | 1 | __...... | 6 | 75 |
| MIMAT0016674 | cin-miR-4094-5p | 3 | __...... | 8 | 75 |
| MIMAT0017796 | rno-miR-3542 | 3 | _......_ | 8 | 75 |
| MIMAT0027029 | gga-miR-3530-5p | 1 | __...... | 6 | 75 |
| MIMAT0017634 | aly-miR845b-3p | 3 | __...... | 8 | 75 |
| MIMAT0017520 | aly-miR171c-3p | 8 | ......__ | 3 | 75 |
| MIMAT0017518 | aly-miR171b-3p | 8 | ......__ | 3 | 75 |
| MIMAT0015522 | bmo-miR-3335 | 7 | ......__ | 2 | 75 |
| MIMAT0019218 | hsa-miR-3194-3p | 2 | __...... | 7 | 75 |
| MIMAT0014940 | mmu-miR-3104-3p | 3 | __...... | 8 | 75 |
| MIMAT0014930 | mmu-miR-344g-3p | 3 | _......_ | 8 | 75 |
| MIMAT0017391 | tgu-miR-301-5p | 1 | __...... | 6 | 75 |
| MIMAT0026965 | tgu-miR-1803-5p | 6 | _......_ | 1 | 75 |
| MIMAT0014173 | rco-miR171b | 8 | ......__ | 3 | 75 |
| MIMAT0014172 | rco-miR171a | 8 | ......__ | 3 | 75 |
| MIMAT0014082 | ctr-miR171 | 8 | ......__ | 3 | 75 |
| MIMAT0013836 | osa-miR1863b | 2 | __...... | 7 | 75 |
| MIMAT0013625 | bmo-miR-745-5p | 1 | ......__ | 6 | 75 |
| MIMAT0012581 | aqc-miR408 | 2 | __...... | 7 | 75 |
| MIMAT0010170 | bol-miR171a | 8 | ......__ | 3 | 75 |
| MIMAT0010164 | bra-miR171d | 8 | ......__ | 3 | 75 |
| MIMAT0010163 | bra-miR171c | 8 | ......__ | 3 | 75 |
| MIMAT0010162 | bra-miR171b | 8 | ......__ | 3 | 75 |
| MIMAT0010161 | bra-miR171a | 8 | ......__ | 3 | 75 |
| MIMAT0007925 | sly-miR171d | 8 | ......__ | 3 | 75 |
| MIMAT0007923 | sly-miR171b | 8 | ......__ | 3 | 75 |
| MIMAT0007824 | osa-miR1871 | 3 | _......_ | 8 | 75 |
| MIMAT0007813 | osa-miR1863a | 2 | __...... | 7 | 75 |
| MIMAT0006580 | vvi-miR845b | 3 | __...... | 8 | 75 |
| MIMAT0006579 | vvi-miR845a | 3 | __...... | 8 | 75 |
| MIMAT0006555 | vvi-miR171g | 8 | ......__ | 3 | 75 |
| MIMAT0007741 | gga-miR-301b-5p | 1 | __...... | 6 | 75 |
| MIMAT0007695 | gga-miR-1783 | 2 | __...... | 7 | 75 |
| MIMAT0007655 | gga-miR-1749-3p | 3 | _......_ | 8 | 75 |
| MIMAT0007651 | gga-miR-1746 | 8 | __...... | 3 | 75 |
| MIMAT0007650 | gga-miR-1745 | 2 | __...... | 7 | 75 |
| MIMAT0007648 | gga-miR-1744-5p | 2 | __...... | 7 | 75 |
| MIMAT0007645 | gga-miR-1741 | 3 | _......_ | 8 | 75 |
| MIMAT0007571 | gga-miR-1684a-5p | 2 | __...... | 7 | 75 |
| MIMAT0007468 | gga-miR-1602 | 3 | _......_ | 8 | 75 |
| MIMAT0007442 | gga-miR-1581 | 7 | ......__ | 2 | 75 |
| MIMAT0007363 | gma-miR171b-3p | 7 | ......__ | 2 | 75 |
| MIMAT0007358 | gma-miR171a | 7 | ......__ | 2 | 75 |
| MIMAT0005996 | ptc-miR171j | 7 | ......__ | 2 | 75 |
| MIMAT0005995 | ptc-miR171m | 7 | ......__ | 2 | 75 |
| MIMAT0005994 | ptc-miR171l-3p | 7 | ......__ | 2 | 75 |
| MIMAT0006909 | oan-miR-301-5p | 1 | __...... | 6 | 75 |
| MIMAT0005696 | vvi-miR171f | 8 | ......__ | 3 | 75 |
| MIMAT0005609 | bna-miR171e | 8 | ......__ | 3 | 75 |
| MIMAT0005608 | bna-miR171d | 8 | ......__ | 3 | 75 |
| MIMAT0005607 | bna-miR171c | 8 | ......__ | 3 | 75 |
| MIMAT0005606 | bna-miR171b | 8 | ......__ | 3 | 75 |
| MIMAT0005605 | bna-miR171a | 8 | ......__ | 3 | 75 |
| MIMAT0017300 | rno-miR-301b-5p | 1 | __...... | 6 | 75 |
| MIMAT0005226 | smo-miR171d | 7 | ......__ | 2 | 75 |
| MIMAT0005224 | smo-miR171b | 7 | ......__ | 2 | 75 |
| MIMAT0005223 | smo-miR171a | 8 | ......__ | 3 | 75 |
| MIMAT0005013 | pta-miR952a | 8 | __...... | 3 | 75 |
| MIMAT0004376 | ppt-miR171b | 8 | ......__ | 3 | 75 |
| MIMAT0004375 | ppt-miR171a | 7 | ......__ | 2 | 75 |
| MIMAT0011113 | mtr-miR171f | 8 | ......__ | 3 | 75 |
| MIMAT0032026 | hsa-miR-301b-5p | 1 | __...... | 6 | 75 |
| MIMAT0004317 | ath-miR845b | 3 | __...... | 8 | 75 |
| MIMAT0004245 | ath-miR829-3p.1 | 2 | __...... | 7 | 75 |
| MIMAT0003779 | gga-miR-757 | 7 | __...... | 2 | 75 |
| MIMAT0017232 | mmu-miR-301b-5p | 1 | __...... | 6 | 75 |
| MIMAT0001984 | ptc-miR171b | 8 | ......__ | 3 | 75 |
| MIMAT0001983 | ptc-miR171a-3p | 8 | ......__ | 3 | 75 |
| MIMAT0031991 | dre-miR-301c-5p | 1 | __...... | 6 | 75 |
| MIMAT0001756 | sbi-miR171f | 8 | ......__ | 3 | 75 |
| MIMAT0001746 | zma-miR171h-3p | 8 | ......__ | 3 | 75 |
| MIMAT0001745 | zma-miR171k-3p | 8 | ......__ | 3 | 75 |
| MIMAT0001695 | zma-miR171f-3p | 8 | ......__ | 3 | 75 |
| MIMAT0001466 | sbi-miR171e | 8 | ......__ | 3 | 75 |
| MIMAT0001386 | zma-miR171b-3p | 8 | ......__ | 3 | 75 |
| MIMAT0001323 | ath-miR415 | 8 | __...... | 3 | 75 |
| MIMAT0001077 | osa-miR171h | 8 | ......__ | 3 | 75 |
| MIMAT0000921 | ath-miR171c-3p | 8 | ......__ | 3 | 75 |
| MIMAT0000920 | ath-miR171b-3p | 8 | ......__ | 3 | 75 |
| MIMAT0022696 | hsa-miR-301a-5p | 1 | __...... | 6 | 75 |
| MIMAT0017026 | rno-miR-301a-5p | 1 | __...... | 6 | 75 |
| MIMAT0017008 | mmu-miR-301a-5p | 1 | __...... | 6 | 75 |
