| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | cggctgtg | 8 | ||
| MIMAT0035277 | gsa-miR-2c-3p | 8 | _....... | 2 | 87 |
| MIMAT0033803 | pxy-miR-2b | 8 | _....... | 2 | 87 |
| MIMAT0033691 | sma-miR-2f-3p | 8 | _....... | 2 | 87 |
| MIMAT0031177 | hsa-miR-7974 | 2 | _....... | 8 | 87 |
| MIMAT0029869 | mmu-miR-7677-3p | 2 | ......._ | 8 | 87 |
| MIMAT0028676 | mdo-miR-7334-5p | 2 | _....... | 8 | 87 |
| MIMAT0028561 | mdo-miR-7289-3p | 7 | _....... | 1 | 87 |
| MIMAT0027346 | blv-miR-B1-5p | 2 | _....... | 8 | 87 |
| MIMAT0025641 | gga-miR-3594-5p | 8 | _....... | 2 | 87 |
| MIMAT0025610 | gga-miR-6551-3p | 2 | _....... | 8 | 87 |
| MIMAT0025030 | sma-miR-2a-3p | 8 | _....... | 2 | 87 |
| MIMAT0024480 | mse-miR-2b | 8 | _....... | 2 | 87 |
| MIMAT0024479 | mse-miR-2a | 8 | _....... | 2 | 87 |
| MIMAT0024447 | mse-miR-31 | 1 | _....... | 7 | 87 |
| MIMAT0023032 | tur-miR-5728-1-5p | 7 | ......._ | 1 | 87 |
| MIMAT0023065 | tur-miR-5733-3p | 2 | _....... | 8 | 87 |
| MIMAT0020257 | emu-miR-2c-3p | 8 | _....... | 2 | 87 |
| MIMAT0020232 | egr-miR-2c-3p | 8 | _....... | 2 | 87 |
| MIMAT0016246 | sja-miR-2a-3p | 8 | _....... | 2 | 87 |
| MIMAT0014550 | tgu-miR-2993 | 2 | ......._ | 8 | 87 |
| MIMAT0013343 | mtr-miR2623 | 2 | ......._ | 8 | 87 |
| MIMAT0009504 | cte-miR-2b | 8 | _....... | 2 | 87 |
| MIMAT0032050 | dvi-miR-313-5p | 2 | ......._ | 8 | 87 |
| MIMAT0015242 | bmo-miR-31-3p | 1 | _....... | 7 | 87 |
| MIMAT0003968 | sme-miR-2d-3p | 8 | _....... | 2 | 87 |
| MIMAT0003967 | sme-miR-2c-3p | 8 | _....... | 2 | 87 |
| MIMAT0003966 | sme-miR-2b-3p | 8 | _....... | 2 | 87 |
| MIMAT0033249 | ppc-miR-8218b-3p | 8 | ......a. | 1 | 87 |
| MIMAT0025663 | gga-miR-6578-5p | 1 | .a...... | 8 | 87 |
| MIMAT0007588 | gga-miR-1696 | 1 | .t...... | 8 | 87 |
| MIMAT0007415 | gga-miR-1558 | 1 | .t...... | 8 | 87 |
| MIMAT0036920 | oha-miR-383-3p | 7 | __...... | 2 | 75 |
| MIMAT0035737 | rno-miR-3064-5p | 2 | _......_ | 7 | 75 |
| MIMAT0035461 | sly-miR9473-5p | 2 | _......_ | 7 | 75 |
| MIMAT0034830 | efu-miR-9228 | 3 | _......_ | 8 | 75 |
| MIMAT0034797 | efu-miR-9209d | 6 | ......__ | 1 | 75 |
| MIMAT0034758 | eca-miR-9178 | 3 | _......_ | 8 | 75 |
| MIMAT0034550 | eca-miR-9010 | 8 | ......__ | 3 | 75 |
| MIMAT0034335 | cfa-miR-8842 | 2 | __...... | 7 | 75 |
| MIMAT0033967 | esi-miR8629 | 7 | __...... | 2 | 75 |
| MIMAT0033815 | pxy-miR-8546 | 1 | _......_ | 6 | 75 |
| MIMAT0032680 | ssa-miR-730a-3p | 6 | __...... | 1 | 75 |
| MIMAT0032652 | ssa-miR-460-3p | 6 | __...... | 1 | 75 |
| MIMAT0032523 | ssa-miR-2188-3p | 1 | __...... | 6 | 75 |
| MIMAT0032404 | ssa-miR-15e-3p | 3 | _......_ | 8 | 75 |
| MIMAT0031667 | bbe-miR-31-3p | 1 | __...... | 6 | 75 |
| MIMAT0031338 | stu-miR408a-3p | 8 | __...... | 3 | 75 |
| MIMAT0030530 | prd-miR-36-5p | 3 | ......__ | 8 | 75 |
| MIMAT0029851 | mmu-miR-7672-3p | 2 | ......__ | 7 | 75 |
| MIMAT0029518 | ipu-miR-460 | 6 | __...... | 1 | 75 |
| MIMAT0031146 | aja-miR-3120 | 6 | __...... | 1 | 75 |
| MIMAT0028949 | oan-miR-7403-3p | 1 | _......_ | 6 | 75 |
| MIMAT0028678 | mdo-miR-7335-5p | 2 | __...... | 7 | 75 |
| MIMAT0028496 | mdo-miR-7264-5p | 2 | _......_ | 7 | 75 |
| MIMAT0028284 | mml-miR-7173-5p | 3 | __...... | 8 | 75 |
| MIMAT0028245 | mml-miR-7163-3p | 7 | _......_ | 2 | 75 |
| MIMAT0026307 | ccr-miR-460-3p | 6 | __...... | 1 | 75 |
| MIMAT0027873 | mmu-miR-6985-3p | 8 | __...... | 3 | 75 |
| MIMAT0027865 | mmu-miR-6981-3p | 8 | _......_ | 3 | 75 |
| MIMAT0027845 | mmu-miR-6971-3p | 6 | _......_ | 1 | 75 |
| MIMAT0027835 | mmu-miR-6966-3p | 2 | __...... | 7 | 75 |
| MIMAT0027613 | hsa-miR-6856-3p | 7 | _......_ | 2 | 75 |
| MIMAT0027393 | hsa-miR-6746-3p | 6 | ......__ | 1 | 75 |
| MIMAT0025802 | gga-miR-6696-5p | 2 | __...... | 7 | 75 |
| MIMAT0025704 | gga-miR-6609-3p | 6 | _......_ | 1 | 75 |
| MIMAT0025631 | gga-miR-3064-5p | 2 | _......_ | 7 | 75 |
| MIMAT0025616 | gga-miR-6554-3p | 2 | __...... | 7 | 75 |
| MIMAT0025160 | mmu-miR-6407 | 2 | _......_ | 7 | 75 |
| MIMAT0024991 | hme-miR-928 | 3 | _......_ | 8 | 75 |
| MIMAT0024791 | hbr-miR396a | 6 | __...... | 1 | 75 |
| MIMAT0024572 | bta-miR-3120 | 6 | __...... | 1 | 75 |
| MIMAT0024398 | ppy-miR-4672 | 7 | __...... | 2 | 75 |
| MIMAT0023999 | cgr-miR-674 | 6 | __...... | 1 | 75 |
| MIMAT0023671 | ame-miR-6047a | 8 | __...... | 3 | 75 |
| MIMAT0023062 | tur-miR-5732-5p | 8 | _......_ | 3 | 75 |
| MIMAT0023056 | tur-miR-5731-5p | 8 | __...... | 3 | 75 |
| MIMAT0023021 | bra-miR1140 | 6 | _......_ | 1 | 75 |
| MIMAT0022475 | hsa-miR-5685 | 6 | _......_ | 1 | 75 |
| MIMAT0022129 | osa-miR5496 | 7 | ......__ | 2 | 75 |
| MIMAT0021971 | aca-miR-460a-3p | 6 | __...... | 1 | 75 |
| MIMAT0021953 | aca-miR-383-3p | 6 | __...... | 1 | 75 |
| MIMAT0021668 | gma-miR396h | 8 | __...... | 3 | 75 |
| MIMAT0021408 | rmi-miR-5335 | 3 | __...... | 8 | 75 |
| MIMAT0020548 | hvu-miR5052 | 3 | ......__ | 8 | 75 |
| MIMAT0021053 | gma-miR5033 | 1 | _......_ | 6 | 75 |
| MIMAT0019871 | hsa-miR-4741 | 3 | _......_ | 8 | 75 |
| MIMAT0019775 | hsa-miR-4687-3p | 2 | _......_ | 7 | 75 |
| MIMAT0019757 | hsa-miR-4675 | 3 | _......_ | 8 | 75 |
| MIMAT0019632 | pma-miR-4599a | 6 | ......__ | 1 | 75 |
| MIMAT0019620 | pma-miR-4587 | 2 | __...... | 7 | 75 |
| MIMAT0018870 | tca-miR-3886-5p | 7 | __...... | 2 | 75 |
| MIMAT0018072 | hsa-miR-3652 | 1 | ......__ | 6 | 75 |
| MIMAT0017972 | ssc-miR-383 | 7 | __...... | 2 | 75 |
| MIMAT0016660 | cin-miR-4085-3p | 2 | __...... | 7 | 75 |
| MIMAT0016588 | cin-miR-4049-3p | 3 | __...... | 8 | 75 |
| MIMAT0016414 | cin-miR-196-3p | 7 | __...... | 2 | 75 |
| MIMAT0017900 | rno-miR-3120 | 6 | __...... | 1 | 75 |
| MIMAT0017860 | rno-miR-3574 | 7 | ......__ | 2 | 75 |
| MIMAT0015705 | nvi-miR-928 | 3 | _......_ | 8 | 75 |
| MIMAT0017617 | aly-miR834-5p | 8 | __...... | 3 | 75 |
| MIMAT0014982 | hsa-miR-3120-3p | 6 | __...... | 1 | 75 |
| MIMAT0014778 | api-miR-3040 | 6 | ......__ | 1 | 75 |
| MIMAT0014658 | tgu-miR-460a-3p | 6 | __...... | 1 | 75 |
| MIMAT0026989 | tgu-miR-383-3p | 7 | __...... | 2 | 75 |
| MIMAT0014039 | osa-miR2907d | 8 | ......__ | 3 | 75 |
| MIMAT0014038 | osa-miR2907c | 8 | ......__ | 3 | 75 |
| MIMAT0014037 | osa-miR2907b | 8 | ......__ | 3 | 75 |
| MIMAT0014036 | osa-miR2907a | 8 | ......__ | 3 | 75 |
| MIMAT0013860 | bta-miR-2902 | 3 | _......_ | 8 | 75 |
| MIMAT0013000 | eca-miR-301b-5p | 1 | __...... | 6 | 75 |
| MIMAT0026945 | mdo-miR-460-3p | 6 | __...... | 1 | 75 |
| MIMAT0013720 | bmo-miR-2812 | 3 | _......_ | 8 | 75 |
| MIMAT0011802 | bta-miR-2294 | 3 | _......_ | 8 | 75 |
| MIMAT0007749 | gga-miR-1845 | 2 | ......__ | 7 | 75 |
| MIMAT0007552 | gga-miR-1668-3p | 2 | __...... | 7 | 75 |
| MIMAT0007539 | gga-miR-1658-3p | 3 | __...... | 8 | 75 |
| MIMAT0007488 | gga-miR-1621-5p | 3 | ......__ | 8 | 75 |
| MIMAT0015253 | cin-miR-92a-5p | 1 | ......__ | 6 | 75 |
| MIMAT0007327 | gga-miR-460b-3p | 6 | __...... | 1 | 75 |
| MIMAT0006916 | oan-miR-460-3p | 6 | __...... | 1 | 75 |
| MIMAT0005637 | bna-miR1140 | 6 | _......_ | 1 | 75 |
| MIMAT0005330 | rno-miR-674-3p | 6 | __...... | 1 | 75 |
| MIMAT0005328 | rno-miR-673-5p | 8 | __...... | 3 | 75 |
| MIMAT0005152 | ppt-miR1042-5p | 1 | __...... | 6 | 75 |
| MIMAT0005021 | dme-miR-1008-3p | 7 | __...... | 2 | 75 |
| MIMAT0004439 | ame-miR-928 | 3 | _......_ | 8 | 75 |
| MIMAT0004382 | ppt-miR898a-5p | 3 | __...... | 8 | 75 |
| MIMAT0004381 | ppt-miR898b | 3 | __...... | 8 | 75 |
| MIMAT0026646 | gga-miR-460a-3p | 6 | __...... | 1 | 75 |
| MIMAT0003741 | mmu-miR-674-3p | 6 | __...... | 1 | 75 |
| MIMAT0003739 | mmu-miR-673-5p | 8 | __...... | 3 | 75 |
| MIMAT0026631 | gga-miR-383-3p | 7 | __...... | 2 | 75 |
| MIMAT0026628 | hcmv-miR-US4-3p | 8 | _......_ | 3 | 75 |
| MIMAT0017197 | rno-miR-383-3p | 7 | __...... | 2 | 75 |
| MIMAT0002998 | tni-miR-460 | 6 | __...... | 1 | 75 |
| MIMAT0002997 | fru-miR-460 | 6 | __...... | 1 | 75 |
| MIMAT0001888 | dre-miR-460-3p | 6 | __...... | 1 | 75 |
| MIMAT0017082 | mmu-miR-383-3p | 7 | __...... | 2 | 75 |
