| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | cgggaat | 7 | ||
| MIMAT0032787 | cel-miR-8187-5p | 2 | ....... | 8 | 100 |
| MIMAT0030273 | bdi-miR7763-3p | 7 | ....... | 1 | 100 |
| MIMAT0013627 | bmo-miR-2757-5p | 2 | ....... | 8 | 100 |
| MIMAT0037221 | ata-miR2118b-3p | 1 | _...... | 6 | 85 |
| MIMAT0037220 | ata-miR2118b-5p | 6 | ......_ | 1 | 85 |
| MIMAT0037181 | ata-miR2118a-3p | 1 | _...... | 6 | 85 |
| MIMAT0037126 | ata-miR166b-5p | 1 | _...... | 6 | 85 |
| MIMAT0035722 | rno-miR-1247-3p | 1 | ......_ | 6 | 85 |
| MIMAT0035332 | gsa-miR-9394a-5p | 2 | _...... | 7 | 85 |
| MIMAT0034591 | eca-miR-9047 | 8 | ......_ | 3 | 85 |
| MIMAT0033514 | sma-miR-36b-5p | 2 | _...... | 7 | 85 |
| MIMAT0033111 | ppc-miR-8297-5p | 6 | _...... | 1 | 85 |
| MIMAT0032793 | cel-miR-8190-5p | 1 | ......_ | 6 | 85 |
| MIMAT0032650 | ssa-miR-459-3p | 3 | _...... | 8 | 85 |
| MIMAT0032494 | ssa-miR-205a-2-3p | 6 | _...... | 1 | 85 |
| MIMAT0032493 | ssa-miR-205a-3p | 6 | _...... | 1 | 85 |
| MIMAT0031811 | cpa-miR172b | 1 | _...... | 6 | 85 |
| MIMAT0031810 | cpa-miR172a | 1 | _...... | 6 | 85 |
| MIMAT0030093 | bdi-miR395o-5p | 6 | _...... | 1 | 85 |
| MIMAT0028359 | mml-miR-1247-3p | 1 | ......_ | 6 | 85 |
| MIMAT0028317 | mml-miR-3938-3p | 7 | _...... | 2 | 85 |
| MIMAT0028169 | dev-miR-D1-5p | 3 | _...... | 8 | 85 |
| MIMAT0026305 | ccr-miR-459-3p | 3 | _...... | 8 | 85 |
| MIMAT0025844 | hsa-miR-6716-5p | 2 | _...... | 7 | 85 |
| MIMAT0025550 | bta-miR-1247-3p | 1 | ......_ | 6 | 85 |
| MIMAT0025228 | ptc-miR6427-3p | 3 | _...... | 8 | 85 |
| MIMAT0024776 | nta-miR482d | 6 | ......_ | 1 | 85 |
| MIMAT0024391 | ppy-miR-3938 | 7 | _...... | 2 | 85 |
| MIMAT0021368 | mtr-miR5297 | 3 | ......_ | 8 | 85 |
| MIMAT0027093 | bdi-miR395j-5p | 8 | ......_ | 3 | 85 |
| MIMAT0020552 | osa-miR5072 | 8 | _...... | 3 | 85 |
| MIMAT0019766 | hsa-miR-4681 | 3 | ......_ | 8 | 85 |
| MIMAT0018353 | hsa-miR-3938 | 7 | _...... | 2 | 85 |
| MIMAT0016798 | cin-miR-4183-5p | 3 | ......_ | 8 | 85 |
| MIMAT0017761 | esi-miR3460-5p | 1 | _...... | 6 | 85 |
| MIMAT0013918 | ssc-miR-425-3p | 3 | ......_ | 8 | 85 |
| MIMAT0011960 | bta-miR-2403 | 3 | ......_ | 8 | 85 |
| MIMAT0011761 | zma-miR2118b | 6 | ......_ | 1 | 85 |
| MIMAT0011756 | osa-miR2118q | 6 | ......_ | 1 | 85 |
| MIMAT0011755 | osa-miR2118p | 6 | ......_ | 1 | 85 |
| MIMAT0011753 | osa-miR2118n | 6 | ......_ | 1 | 85 |
| MIMAT0011742 | osa-miR2118c | 6 | ......_ | 1 | 85 |
| MIMAT0011741 | osa-miR2118b | 6 | ......_ | 1 | 85 |
| MIMAT0010025 | ppt-miR1023e-3p | 2 | _...... | 7 | 85 |
| MIMAT0015287 | bmo-miR-190-3p | 3 | ......_ | 8 | 85 |
| MIMAT0017306 | rno-miR-425-3p | 3 | ......_ | 8 | 85 |
| MIMAT0005107 | ppt-miR1023c-3p | 2 | _...... | 7 | 85 |
| MIMAT0004239 | ath-miR822-5p | 3 | ......_ | 8 | 85 |
| MIMAT0004153 | mdo-miR-425-3p | 3 | ......_ | 8 | 85 |
| MIMAT0003833 | bta-miR-425-3p | 3 | ......_ | 8 | 85 |
| MIMAT0004836 | ebv-miR-BART19-5p | 8 | _...... | 3 | 85 |
| MIMAT0014801 | mmu-miR-1247-3p | 1 | ......_ | 6 | 85 |
| MIMAT0003408 | dre-miR-459-3p | 3 | _...... | 8 | 85 |
| MIMAT0001343 | hsa-miR-425-3p | 3 | ......_ | 8 | 85 |
| MIMAT0001342 | mmu-miR-425-3p | 3 | ......_ | 8 | 85 |
| MIMAT0020787 | dme-miR-6-1-5p | 2 | _...... | 7 | 85 |
