| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | cggggatc | 8 | ||
| MIMAT0032774 | ath-miR8175 | 8 | ........ | 1 | 100 |
| MIMAT0003415 | ebv-miR-BART6-3p | 1 | ........ | 8 | 100 |
| MIMAT0037273 | ame-miR-9869 | 2 | ......._ | 8 | 87 |
| MIMAT0036272 | chi-miR-542-5p | 2 | ......._ | 8 | 87 |
| MIMAT0035228 | dme-miR-9382-3p | 7 | ......._ | 1 | 87 |
| MIMAT0021447 | asu-miR-36e-5p | 1 | ......._ | 7 | 87 |
| MIMAT0021443 | asu-miR-36c-5p | 1 | ......._ | 7 | 87 |
| MIMAT0020138 | cel-miR-4932 | 1 | _....... | 7 | 87 |
| MIMAT0015991 | ppy-miR-542-5p | 2 | ......._ | 8 | 87 |
| MIMAT0013924 | ssc-miR-542-5p | 2 | ......._ | 8 | 87 |
| MIMAT0013594 | bta-miR-542-5p | 2 | ......._ | 8 | 87 |
| MIMAT0006406 | mml-miR-542-5p | 2 | ......._ | 8 | 87 |
| MIMAT0003340 | hsa-miR-542-5p | 2 | ......._ | 8 | 87 |
| MIMAT0034400 | cfa-miR-769 | 1 | .t...... | 8 | 87 |
| MIMAT0013958 | ssc-miR-769-3p | 1 | .t...... | 8 | 87 |
| MIMAT0013016 | eca-miR-769a-3p | 1 | .t...... | 8 | 87 |
| MIMAT0003887 | hsa-miR-769-3p | 1 | .t...... | 8 | 87 |
| MIMAT0022913 | ptc-miR408-5p | 1 | ......a. | 8 | 87 |
| MIMAT0037071 | ssc-miR-9852-3p | 2 | __...... | 7 | 75 |
| MIMAT0034666 | eca-miR-9117 | 3 | __...... | 8 | 75 |
| MIMAT0034533 | eca-miR-8994 | 6 | ......__ | 1 | 75 |
| MIMAT0034448 | eca-miR-8920 | 8 | ......__ | 3 | 75 |
| MIMAT0032926 | ppc-miR-8236-5p | 1 | __...... | 6 | 75 |
| MIMAT0032445 | ssa-miR-193-5p | 2 | __...... | 7 | 75 |
| MIMAT0031339 | stu-miR408b-5p | 2 | ......__ | 7 | 75 |
| MIMAT0030917 | stu-miR8001b-5p | 3 | _......_ | 8 | 75 |
| MIMAT0030774 | prd-miR-7951-5p | 7 | __...... | 2 | 75 |
| MIMAT0030726 | prd-miR-7935-5p | 8 | __...... | 3 | 75 |
| MIMAT0030520 | prd-miR-7881-5p | 7 | __...... | 2 | 75 |
| MIMAT0029678 | cbn-miR-7635 | 2 | __...... | 7 | 75 |
| MIMAT0029616 | crm-miR-7599 | 2 | __...... | 7 | 75 |
| MIMAT0029358 | lja-miR7533b | 3 | _......_ | 8 | 75 |
| MIMAT0029357 | lja-miR7533a | 3 | _......_ | 8 | 75 |
| MIMAT0029133 | ghr-miR7491 | 2 | __...... | 7 | 75 |
| MIMAT0028335 | mml-miR-769-3p | 2 | __...... | 7 | 75 |
| MIMAT0028299 | mml-miR-7177-3p | 8 | __...... | 3 | 75 |
| MIMAT0028193 | dev-miR-D18-3p | 8 | _......_ | 3 | 75 |
| MIMAT0028192 | dev-miR-D18-5p | 1 | __...... | 6 | 75 |
| MIMAT0028056 | mmu-miR-7075-5p | 1 | ......__ | 6 | 75 |
| MIMAT0028022 | mmu-miR-7059-5p | 3 | ......__ | 8 | 75 |
| MIMAT0027834 | mmu-miR-6966-5p | 3 | ......__ | 8 | 75 |
| MIMAT0027756 | mmu-miR-6928-5p | 2 | _......_ | 7 | 75 |
| MIMAT0027678 | hsa-miR-6889-5p | 2 | ......__ | 7 | 75 |
| MIMAT0027633 | hsa-miR-6866-3p | 6 | __...... | 1 | 75 |
| MIMAT0027614 | hsa-miR-6857-5p | 3 | _......_ | 8 | 75 |
| MIMAT0027454 | hsa-miR-6777-5p | 2 | ......__ | 7 | 75 |
| MIMAT0027427 | hsa-miR-6763-3p | 7 | ......__ | 2 | 75 |
| MIMAT0027360 | hsa-miR-6729-3p | 8 | _......_ | 3 | 75 |
| MIMAT0025862 | blv-miR-B3-5p | 6 | _......_ | 1 | 75 |
| MIMAT0025739 | gga-miR-6642-5p | 7 | ......__ | 2 | 75 |
| MIMAT0025682 | gga-miR-6590-5p | 2 | __...... | 7 | 75 |
| MIMAT0025108 | mmu-miR-6364 | 8 | __...... | 3 | 75 |
| MIMAT0024873 | osa-miR6250 | 1 | _......_ | 6 | 75 |
| MIMAT0024867 | osa-miR6246 | 3 | _......_ | 8 | 75 |
| MIMAT0024497 | mse-miR-450 | 1 | __...... | 6 | 75 |
| MIMAT0023983 | cgr-miR-542-5p | 3 | ......__ | 8 | 75 |
| MIMAT0023427 | hco-miR-5935 | 2 | __...... | 7 | 75 |
| MIMAT0023152 | mtr-miR5206b | 3 | __...... | 8 | 75 |
| MIMAT0022079 | aca-miR-5453 | 6 | _......_ | 1 | 75 |
| MIMAT0021342 | mtr-miR5284h | 3 | __...... | 8 | 75 |
| MIMAT0021336 | mtr-miR5284b | 3 | __...... | 8 | 75 |
| MIMAT0021137 | mtr-miR5206a | 3 | __...... | 8 | 75 |
| MIMAT0021043 | hsa-miR-5010-5p | 3 | _......_ | 8 | 75 |
| MIMAT0020177 | dme-miR-4958-5p | 1 | __...... | 6 | 75 |
| MIMAT0019885 | hsa-miR-4749-5p | 3 | ......__ | 8 | 75 |
| MIMAT0019821 | hsa-miR-4713-3p | 2 | __...... | 7 | 75 |
| MIMAT0019806 | hsa-miR-4706 | 3 | ......__ | 8 | 75 |
| MIMAT0019064 | hsa-miR-4525 | 3 | _......_ | 8 | 75 |
| MIMAT0018971 | hsa-miR-4450 | 2 | _......_ | 7 | 75 |
| MIMAT0018216 | hvu-miR168-3p | 6 | __...... | 1 | 75 |
| MIMAT0018681 | tca-miR-3826-3p | 8 | _......_ | 3 | 75 |
| MIMAT0016895 | hsa-miR-2355-5p | 6 | _......_ | 1 | 75 |
| MIMAT0016580 | cin-miR-4045-3p | 2 | __...... | 7 | 75 |
| MIMAT0016076 | ppy-miR-638 | 2 | __...... | 7 | 75 |
| MIMAT0015895 | ppy-miR-450b-3p | 3 | __...... | 8 | 75 |
| MIMAT0015052 | hsa-miR-3175 | 1 | ......__ | 6 | 75 |
| MIMAT0014831 | mmu-miR-3062-3p | 1 | ......__ | 6 | 75 |
| MIMAT0031032 | tgu-miR-92-2-5p | 3 | _......_ | 8 | 75 |
| MIMAT0014474 | tgu-miR-2954-3p | 7 | _......_ | 2 | 75 |
| MIMAT0014621 | tgu-miR-2962-3p | 7 | _......_ | 2 | 75 |
| MIMAT0014448 | gga-miR-2954 | 7 | _......_ | 2 | 75 |
| MIMAT0013847 | bta-miR-2889 | 7 | ......__ | 2 | 75 |
| MIMAT0013237 | eca-miR-542-5p | 3 | ......__ | 8 | 75 |
| MIMAT0013652 | bmo-miR-2770-3p | 8 | _......_ | 3 | 75 |
| MIMAT0020913 | dme-miR-2492-5p | 3 | __...... | 8 | 75 |
| MIMAT0011918 | bta-miR-2373-5p | 8 | ......__ | 3 | 75 |
| MIMAT0011808 | bta-miR-2299-3p | 3 | ......__ | 8 | 75 |
| MIMAT0011475 | cbr-miR-56-5p | 3 | _......_ | 8 | 75 |
| MIMAT0008152 | ptr-miR-450b | 3 | __...... | 8 | 75 |
| MIMAT0006480 | mml-miR-638 | 2 | __...... | 7 | 75 |
| MIMAT0006334 | mml-miR-450b-3p | 3 | __...... | 8 | 75 |
| MIMAT0007225 | oan-miR-1408 | 1 | ......__ | 6 | 75 |
| MIMAT0005541 | mcmv-miR-m22-1 | 7 | ......__ | 2 | 75 |
| MIMAT0004910 | hsa-miR-450b-3p | 3 | __...... | 8 | 75 |
| MIMAT0004060 | osa-miR815c | 3 | _......_ | 8 | 75 |
| MIMAT0004059 | osa-miR815b | 3 | _......_ | 8 | 75 |
| MIMAT0004058 | osa-miR815a | 3 | _......_ | 8 | 75 |
| MIMAT0003927 | mdv1-miR-M6-3p | 8 | __...... | 3 | 75 |
| MIMAT0015227 | bmo-miR-14-5p | 1 | ......__ | 6 | 75 |
| MIMAT0003343 | hcmv-miR-UL70-3p | 1 | _......_ | 6 | 75 |
| MIMAT0003308 | hsa-miR-638 | 2 | __...... | 7 | 75 |
| MIMAT0003178 | rno-miR-542-5p | 3 | ......__ | 8 | 75 |
| MIMAT0003171 | mmu-miR-542-5p | 3 | ......__ | 8 | 75 |
| MIMAT0002187 | kshv-miR-K12-7-3p | 7 | __...... | 2 | 75 |
| MIMAT0015122 | osa-miR168a-3p | 6 | __...... | 1 | 75 |
