Result for your query miRNA sequence
>rrv-miR-rr1-9-3p
cggucau

RED =100 % Complementary sequence
.=Identical residue
blue alphabets=mismatch
_=Gap


Acc numbermiRNAStartAlignmentEnd% Identity
Query1cggtcat7
MIMAT0005551mcmv-miR-m88-1-5p7.......1100
MIMAT0037233ata-miR167d-3p2_......785
MIMAT0037175ata-miR167b-3p2_......785
MIMAT0037137ata-miR169c-3p3......_885
MIMAT0037109ata-miR167e-3p1_......685
MIMAT0036881oha-miR-29a-2-5p6......_185
MIMAT0036831oha-miR-215-5p6_......185
MIMAT0036116chi-miR-29c-5p6......_185
MIMAT0036060chi-miR-215-5p6_......185
MIMAT0035656bra-miR9552b-3p6......_185
MIMAT0035458sly-miR167b-3p2_......785
MIMAT0034925efu-miR-2157_......285
MIMAT0033542sma-miR-8419-5p8......_385
MIMAT0032440ssa-miR-192a-5p6_......185
MIMAT0031304stu-miR167c-3p1_......685
MIMAT0030312bdi-miR7779-5p3_......885
MIMAT0030092bdi-miR167e-3p2_......785
MIMAT0029446ipu-miR-1926_......185
MIMAT0029158ghr-miR7510a3_......885
MIMAT0029143ghr-miR7496b6_......185
MIMAT0029142ghr-miR7496a6_......185
MIMAT0029052gga-miR-7449-5p2_......785
MIMAT0028889mdo-miR-7395-3p6_......185
MIMAT0028843mdo-miR-7386c-3p7_......285
MIMAT0026250ccr-miR-1926_......185
MIMAT0027813mmu-miR-6956-3p6......_185
MIMAT0025300mja-miR-64928......_385
MIMAT0024509mse-miR-61017_......285
MIMAT0023853cgr-miR-215-5p6_......185
MIMAT0023835cgr-miR-19736......_185
MIMAT0022109pti-miR54766......_185
MIMAT0022090aca-miR-5435b-3p7_......285
MIMAT0021913aca-miR-29a-2-5p6......_185
MIMAT0021873aca-miR-215-5p6_......185
MIMAT0021175mtr-miR52172_......785
MIMAT0020725bdi-miR5178-3p8......_385
MIMAT0021115osa-miR51628_......385
MIMAT0018641tca-miR-3809-3p3......_885
MIMAT0016565cin-miR-4038-5p1......_685
MIMAT0017685aly-miR3433-5p1_......685
MIMAT0017480aly-miR167d-3p2_......785
MIMAT0017478aly-miR167c-3p2_......785
MIMAT0017476aly-miR167b-3p1_......685
MIMAT0014577tgu-miR-215-5p6_......185
MIMAT0031063tgu-miR-29a-2-5p6......_185
MIMAT0013190eca-miR-2156_......185
MIMAT0012751mdo-miR-2156_......185
MIMAT0012001bta-miR-2431-5p3_......885
MIMAT0011997bta-miR-24272_......785
MIMAT0010192ssc-miR-2156_......185
MIMAT0009848cfa-miR-2156_......185
MIMAT0026919bta-miR-29d-5p6......_185
MIMAT0007000oan-miR-215-5p6_......185
MIMAT0009167oan-miR-29a-2-5p6......_185
MIMAT0005555mcmv-miR-m107-1-5p1......_685
MIMAT0003797bta-miR-2156_......185
MIMAT0003676xtr-miR-29c-5p6......_185
MIMAT0003628xtr-miR-2156_......185
MIMAT0003615xtr-miR-1926_......185
MIMAT0003118rno-miR-2156_......185
MIMAT0002942tni-miR-1926_......185
MIMAT0002941fru-miR-1926_......185
MIMAT0002736mne-miR-2156_......185
MIMAT0002734ggo-miR-2156_......185
MIMAT0002732ppy-miR-2156_......185
MIMAT0002730ptr-miR-2156_......185
MIMAT0002728mml-miR-215-5p6_......185
MIMAT0015188zma-miR167g-3p1_......685
MIMAT0015144zma-miR167d-3p1_......685
MIMAT0001303cbr-miR-3606......_185
MIMAT0001275dre-miR-1926_......185
MIMAT0001134gga-miR-215-5p6_......185
MIMAT0022874osa-miR167h-3p2_......785
MIMAT0031917ath-miR167c-3p3_......885
MIMAT0000904mmu-miR-215-5p6_......185
MIMAT0003154rno-miR-29c-5p6......_185
MIMAT0000702cel-miR-360-3p6......_185
MIMAT0004673hsa-miR-29c-5p6......_185
MIMAT0022860osa-miR167c-3p1_......685
MIMAT0004632mmu-miR-29c-5p6......_185
MIMAT0000272hsa-miR-215-5p6_......185