| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | cggtgggg | 8 | ||
| MIMAT0034905 | efu-miR-9272 | 8 | _....... | 2 | 87 |
| MIMAT0031659 | bbe-miR-278-5p | 2 | ......._ | 8 | 87 |
| MIMAT0031616 | bbe-miR-2058-3p | 2 | _....... | 8 | 87 |
| MIMAT0032219 | lva-miR-278-3p | 2 | ......._ | 8 | 87 |
| MIMAT0032172 | pmi-miR-278-3p | 2 | ......._ | 8 | 87 |
| MIMAT0031050 | mdo-miR-92a-2-5p | 2 | _....... | 8 | 87 |
| MIMAT0027472 | hsa-miR-6786-5p | 2 | ......._ | 8 | 87 |
| MIMAT0024960 | hme-miR-278 | 2 | ......._ | 8 | 87 |
| MIMAT0024451 | mse-miR-278 | 2 | ......._ | 8 | 87 |
| MIMAT0024259 | ggo-miR-3151 | 1 | _....... | 7 | 87 |
| MIMAT0024031 | ptr-miR-3151 | 1 | _....... | 7 | 87 |
| MIMAT0023804 | cgr-miR-181d-3p | 7 | ......._ | 1 | 87 |
| MIMAT0023031 | tur-miR-278-3p | 2 | ......._ | 8 | 87 |
| MIMAT0018999 | hsa-miR-4472 | 1 | _....... | 7 | 87 |
| MIMAT0018966 | hsa-miR-4447 | 1 | _....... | 7 | 87 |
| MIMAT0016930 | isc-miR-278 | 2 | ......._ | 8 | 87 |
| MIMAT0016159 | ppy-miR-1224-3p | 7 | _....... | 1 | 87 |
| MIMAT0015024 | hsa-miR-3151-5p | 1 | _....... | 7 | 87 |
| MIMAT0014723 | api-miR-278 | 2 | ......._ | 8 | 87 |
| MIMAT0014377 | cqu-miR-278 | 2 | ......._ | 8 | 87 |
| MIMAT0014238 | aae-miR-278-3p | 2 | ......._ | 8 | 87 |
| MIMAT0017375 | ssc-miR-181d-3p | 7 | ......._ | 1 | 87 |
| MIMAT0013846 | bta-miR-2888 | 1 | _....... | 7 | 87 |
| MIMAT0012653 | dpu-miR-278 | 2 | ......._ | 8 | 87 |
| MIMAT0010135 | bfl-miR-278 | 2 | ......._ | 8 | 87 |
| MIMAT0019167 | bfl-miR-2058-3p | 2 | _....... | 8 | 87 |
| MIMAT0009674 | spu-miR-278-3p | 2 | ......._ | 8 | 87 |
| MIMAT0009640 | sko-miR-278 | 2 | ......._ | 8 | 87 |
| MIMAT0009592 | lgi-miR-278 | 2 | ......._ | 8 | 87 |
| MIMAT0009538 | cte-miR-278 | 2 | ......._ | 8 | 87 |
| MIMAT0009164 | bmo-miR-278-3p | 2 | ......._ | 8 | 87 |
| MIMAT0009402 | mmu-miR-1938 | 1 | ......._ | 7 | 87 |
| MIMAT0009086 | dya-miR-278 | 2 | ......._ | 8 | 87 |
| MIMAT0009029 | dwi-miR-278 | 2 | ......._ | 8 | 87 |
| MIMAT0008937 | dvi-miR-278-3p | 2 | ......._ | 8 | 87 |
| MIMAT0008891 | dsi-miR-278 | 2 | ......._ | 8 | 87 |
| MIMAT0008781 | dse-miR-278 | 2 | ......._ | 8 | 87 |
| MIMAT0008726 | dpe-miR-278 | 2 | ......._ | 8 | 87 |
| MIMAT0008676 | dmo-miR-278 | 2 | ......._ | 8 | 87 |
| MIMAT0008597 | dgr-miR-278 | 2 | ......._ | 8 | 87 |
| MIMAT0008530 | der-miR-278 | 2 | ......._ | 8 | 87 |
| MIMAT0008470 | dan-miR-278 | 2 | ......._ | 8 | 87 |
| MIMAT0007764 | osa-miR1846d-5p | 8 | ......._ | 2 | 87 |
| MIMAT0026809 | mml-miR-92a-5p | 2 | _....... | 8 | 87 |
| MIMAT0007457 | gga-miR-1594 | 2 | _....... | 8 | 87 |
| MIMAT0006857 | oan-miR-92a-1-5p | 2 | _....... | 8 | 87 |
| MIMAT0005571 | mml-miR-1224-3p | 7 | _....... | 1 | 87 |
| MIMAT0005569 | ptr-miR-1224-3p | 7 | _....... | 1 | 87 |
| MIMAT0017264 | mmu-miR-181d-3p | 7 | ......._ | 1 | 87 |
| MIMAT0004011 | sme-miR-278-3p | 2 | ......._ | 8 | 87 |
| MIMAT0017231 | mmu-miR-1224-3p | 7 | _....... | 1 | 87 |
| MIMAT0005459 | hsa-miR-1224-3p | 7 | _....... | 1 | 87 |
| MIMAT0001511 | aga-miR-278 | 2 | ......._ | 8 | 87 |
| MIMAT0001482 | ame-miR-278 | 2 | ......._ | 8 | 87 |
| MIMAT0001242 | dps-miR-278 | 2 | ......._ | 8 | 87 |
| MIMAT0017108 | rno-miR-92a-2-5p | 2 | _....... | 8 | 87 |
| MIMAT0004635 | mmu-miR-92a-2-5p | 2 | _....... | 8 | 87 |
| MIMAT0000339 | dme-miR-278-3p | 2 | ......._ | 8 | 87 |
| MIMAT0004508 | hsa-miR-92a-2-5p | 2 | _....... | 8 | 87 |
| MIMAT0028076 | mmu-miR-7085-5p | 1 | .a...... | 8 | 87 |
| MIMAT0026837 | mml-miR-194-3p | 1 | .a...... | 8 | 87 |
| MIMAT0037235 | ata-miR394-3p | 2 | _......_ | 7 | 75 |
| MIMAT0036758 | oha-miR-181a-1-3p | 7 | ......__ | 2 | 75 |
| MIMAT0036566 | tch-miR-491-5p | 2 | __...... | 7 | 75 |
| MIMAT0036251 | chi-miR-491-5p | 2 | __...... | 7 | 75 |
| MIMAT0035750 | rno-miR-5132-5p | 2 | __...... | 7 | 75 |
| MIMAT0035732 | rno-miR-1896 | 2 | _......_ | 7 | 75 |
| MIMAT0035438 | sly-miR394-3p | 2 | _......_ | 7 | 75 |
| MIMAT0035295 | gsa-miR-278-3p | 3 | ......__ | 8 | 75 |
| MIMAT0035029 | efu-miR-411 | 2 | ......__ | 7 | 75 |
| MIMAT0035008 | efu-miR-181f | 7 | ......__ | 2 | 75 |
| MIMAT0034616 | eca-miR-9071 | 8 | ......__ | 3 | 75 |
| MIMAT0034172 | gra-miR8748 | 2 | ......__ | 7 | 75 |
| MIMAT0033708 | pxy-miR-8498 | 1 | __...... | 6 | 75 |
| MIMAT0033515 | sma-miR-36b-3p | 6 | ......__ | 1 | 75 |
| MIMAT0031716 | bbe-miR-705-5p | 1 | _......_ | 6 | 75 |
| MIMAT0031551 | ppe-miR8128-3p | 3 | __...... | 8 | 75 |
| MIMAT0030998 | hsa-miR-8071 | 1 | ......__ | 6 | 75 |
| MIMAT0030821 | prd-miR-7961-3p | 8 | _......_ | 3 | 75 |
| MIMAT0030531 | prd-miR-36-3p | 6 | ......__ | 1 | 75 |
| MIMAT0030408 | ptc-miR7836 | 3 | _......_ | 8 | 75 |
| MIMAT0030393 | ptc-miR7837 | 3 | _......_ | 8 | 75 |
| MIMAT0029850 | mmu-miR-7672-5p | 1 | ......__ | 6 | 75 |
| MIMAT0029339 | lja-miR7523b | 7 | ......__ | 2 | 75 |
| MIMAT0029338 | lja-miR7523a | 7 | ......__ | 2 | 75 |
| MIMAT0028982 | oan-miR-7417-5p | 8 | __...... | 3 | 75 |
| MIMAT0031027 | oan-miR-181a-3-3p | 6 | ......__ | 1 | 75 |
| MIMAT0028740 | mdo-miR-7364-5p | 1 | __...... | 6 | 75 |
| MIMAT0027910 | mmu-miR-7003-5p | 2 | __...... | 7 | 75 |
| MIMAT0027903 | mmu-miR-7000-3p | 8 | _......_ | 3 | 75 |
| MIMAT0027862 | mmu-miR-6980-5p | 1 | __...... | 6 | 75 |
| MIMAT0027848 | mmu-miR-6973a-5p | 3 | ......__ | 8 | 75 |
| MIMAT0027826 | mmu-miR-6963-5p | 1 | _......_ | 6 | 75 |
| MIMAT0027804 | mmu-miR-6952-5p | 3 | _......_ | 8 | 75 |
| MIMAT0027620 | hsa-miR-6769b-5p | 2 | _......_ | 7 | 75 |
| MIMAT0027492 | hsa-miR-6796-5p | 3 | __...... | 8 | 75 |
| MIMAT0027438 | hsa-miR-6769a-5p | 2 | _......_ | 7 | 75 |
| MIMAT0027432 | hsa-miR-6766-5p | 3 | _......_ | 8 | 75 |
| MIMAT0027412 | hsa-miR-6756-5p | 3 | _......_ | 8 | 75 |
| MIMAT0027385 | hsa-miR-6742-5p | 2 | __...... | 7 | 75 |
| MIMAT0025825 | gga-miR-6622-3p | 2 | __...... | 7 | 75 |
| MIMAT0025311 | prv-miR-LLT8 | 1 | __...... | 6 | 75 |
| MIMAT0025041 | sma-miR-36a-3p | 6 | ......__ | 1 | 75 |
| MIMAT0024575 | bta-miR-4286 | 7 | __...... | 2 | 75 |
| MIMAT0024568 | bta-miR-1260b | 8 | _......_ | 3 | 75 |
| MIMAT0024370 | ppy-miR-1260b | 8 | _......_ | 3 | 75 |
| MIMAT0027114 | mml-miR-1296-3p | 3 | __...... | 8 | 75 |
| MIMAT0024319 | mml-miR-1260b | 8 | _......_ | 3 | 75 |
| MIMAT0024240 | ggo-miR-1260b | 8 | _......_ | 3 | 75 |
| MIMAT0024238 | ggo-miR-654 | 2 | _......_ | 7 | 75 |
| MIMAT0024196 | ggo-miR-491 | 2 | __...... | 7 | 75 |
| MIMAT0024066 | ptr-miR-1260b | 8 | _......_ | 3 | 75 |
| MIMAT0023746 | cgr-miR-1260 | 8 | _......_ | 3 | 75 |
| MIMAT0023051 | tur-miR-5730-3p | 1 | ......__ | 6 | 75 |
| MIMAT0022328 | cin-miR-5596b-3p | 3 | _......_ | 8 | 75 |
| MIMAT0022079 | aca-miR-5453 | 8 | __...... | 3 | 75 |
| MIMAT0020763 | bdi-miR5054 | 7 | __...... | 2 | 75 |
| MIMAT0020708 | bdi-miR5166 | 8 | _......_ | 3 | 75 |
| MIMAT0020643 | mmu-miR-5132-5p | 3 | __...... | 8 | 75 |
| MIMAT0020640 | mmu-miR-5129-5p | 3 | __...... | 8 | 75 |
| MIMAT0020592 | ssc-miR-491 | 2 | __...... | 7 | 75 |
| MIMAT0020207 | dme-miR-4976-3p | 2 | ......__ | 7 | 75 |
| MIMAT0020149 | dme-miR-4941-3p | 3 | ......__ | 8 | 75 |
| MIMAT0019922 | hsa-miR-4769-5p | 1 | _......_ | 6 | 75 |
| MIMAT0019904 | hsa-miR-4758-3p | 8 | __...... | 3 | 75 |
| MIMAT0019622 | pma-miR-4589 | 1 | __...... | 6 | 75 |
| MIMAT0019356 | mmu-miR-3971 | 8 | __...... | 3 | 75 |
| MIMAT0019324 | oar-miR-541-3p | 2 | _......_ | 7 | 75 |
| MIMAT0018929 | hsa-miR-4417 | 1 | _......_ | 6 | 75 |
| MIMAT0018336 | gma-miR394b-3p | 2 | _......_ | 7 | 75 |
| MIMAT0018882 | tca-miR-3791-5p | 1 | ......__ | 6 | 75 |
| MIMAT0018790 | tca-miR-3859-5p | 7 | __...... | 2 | 75 |
| MIMAT0017976 | ssc-miR-1296-3p | 3 | __...... | 8 | 75 |
| MIMAT0016916 | hsa-miR-4286 | 7 | __...... | 2 | 75 |
| MIMAT0016771 | cin-miR-4163-3p | 7 | _......_ | 2 | 75 |
| MIMAT0017885 | rno-miR-702-3p | 8 | _......_ | 3 | 75 |
| MIMAT0016258 | sja-miR-36-3p | 6 | ......__ | 1 | 75 |
| MIMAT0016238 | ppy-miR-1909 | 2 | __...... | 7 | 75 |
| MIMAT0016199 | ppy-miR-1275 | 1 | __...... | 6 | 75 |
| MIMAT0016184 | ppy-miR-1260a | 8 | _......_ | 3 | 75 |
| MIMAT0016087 | ppy-miR-654-5p | 2 | _......_ | 7 | 75 |
| MIMAT0015990 | ppy-miR-541 | 2 | _......_ | 7 | 75 |
| MIMAT0015911 | ppy-miR-491-5p | 2 | __...... | 7 | 75 |
| MIMAT0017756 | esi-miR3455-3p | 1 | ......__ | 6 | 75 |
| MIMAT0017706 | aly-miR3437-3p | 1 | ......__ | 6 | 75 |
| MIMAT0017544 | aly-miR394a-3p | 2 | _......_ | 7 | 75 |
| MIMAT0015041 | hsa-miR-1260b | 8 | _......_ | 3 | 75 |
| MIMAT0031032 | tgu-miR-92-2-5p | 1 | __...... | 6 | 75 |
| MIMAT0014352 | hsv2-miR-H9-3p | 8 | _......_ | 3 | 75 |
| MIMAT0019189 | rlcv-miR-rL1-22-5p | 2 | __...... | 7 | 75 |
| MIMAT0013855 | bta-miR-2897 | 1 | _......_ | 6 | 75 |
| MIMAT0013168 | eca-miR-541 | 2 | _......_ | 7 | 75 |
| MIMAT0013116 | eca-miR-491-5p | 2 | __...... | 7 | 75 |
| MIMAT0026951 | mml-miR-541-3p | 2 | _......_ | 7 | 75 |
| MIMAT0013759 | bmo-miR-2774c | 3 | ......__ | 8 | 75 |
| MIMAT0013712 | bmo-miR-2808a-3p | 1 | ......__ | 6 | 75 |
| MIMAT0013658 | bmo-miR-2774a | 3 | ......__ | 8 | 75 |
| MIMAT0010013 | bfl-miR-705 | 1 | _......_ | 6 | 75 |
| MIMAT0009343 | bta-miR-541 | 2 | _......_ | 7 | 75 |
| MIMAT0009332 | bta-miR-491 | 2 | __...... | 7 | 75 |
| MIMAT0007996 | ptr-miR-1275 | 1 | __...... | 6 | 75 |
| MIMAT0006495 | mml-miR-654-5p | 2 | _......_ | 7 | 75 |
| MIMAT0006352 | mml-miR-491-5p | 2 | __...... | 7 | 75 |
| MIMAT0007186 | oan-miR-1391-3p | 8 | _......_ | 3 | 75 |
| MIMAT0005929 | hsa-miR-1275 | 1 | __...... | 6 | 75 |
| MIMAT0005911 | hsa-miR-1260a | 8 | _......_ | 3 | 75 |
| MIMAT0005581 | mml-miR-1227 | 1 | __...... | 6 | 75 |
| MIMAT0022941 | hsa-miR-1227-5p | 1 | __...... | 6 | 75 |
| MIMAT0017296 | rno-miR-181d-3p | 6 | ......__ | 1 | 75 |
| MIMAT0004407 | rrv-miR-rR1-1-3p | 8 | ......__ | 3 | 75 |
| MIMAT0004920 | hsa-miR-541-3p | 2 | _......_ | 7 | 75 |
| MIMAT0003495 | mmu-miR-705 | 1 | _......_ | 6 | 75 |
| MIMAT0003492 | mmu-miR-702-3p | 8 | _......_ | 3 | 75 |
| MIMAT0003486 | mmu-miR-491-5p | 2 | __...... | 7 | 75 |
| MIMAT0026637 | hsa-miR-1296-3p | 3 | __...... | 8 | 75 |
| MIMAT0019091 | rlcv-miR-rL1-15-5p | 7 | _......_ | 2 | 75 |
| MIMAT0019087 | rlcv-miR-rL1-8-3p | 1 | _......_ | 6 | 75 |
| MIMAT0003330 | hsa-miR-654-5p | 2 | _......_ | 7 | 75 |
| MIMAT0026608 | hsa-miR-181d-3p | 6 | ......__ | 1 | 75 |
| MIMAT0002807 | hsa-miR-491-5p | 2 | __...... | 7 | 75 |
| MIMAT0015163 | zma-miR394b-3p | 2 | _......_ | 7 | 75 |
| MIMAT0015162 | zma-miR394a-3p | 2 | _......_ | 7 | 75 |
| MIMAT0031907 | ath-miR394b-3p | 2 | _......_ | 7 | 75 |
| MIMAT0020342 | cel-miR-259-3p | 6 | ......__ | 1 | 75 |
