| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | cggttgg | 7 | ||
| MIMAT0035813 | tae-miR9666b-3p | 1 | ....... | 7 | 100 |
| MIMAT0004387 | cre-miR906-5p | 1 | ....... | 7 | 100 |
| MIMAT0036958 | oha-miR-92a-5p | 2 | _...... | 7 | 85 |
| MIMAT0036302 | chi-miR-92a-5p | 2 | _...... | 7 | 85 |
| MIMAT0036111 | chi-miR-296-3p | 3 | _...... | 8 | 85 |
| MIMAT0035505 | bdi-miR9496 | 3 | _...... | 8 | 85 |
| MIMAT0035111 | efu-miR-9343 | 2 | _...... | 7 | 85 |
| MIMAT0034998 | efu-miR-92c | 2 | _...... | 7 | 85 |
| MIMAT0034909 | efu-miR-490 | 7 | _...... | 2 | 85 |
| MIMAT0034871 | efu-miR-9253 | 8 | _...... | 3 | 85 |
| MIMAT0034312 | cfa-miR-8822 | 2 | _...... | 7 | 85 |
| MIMAT0033372 | str-miR-7880o-5p | 2 | _...... | 7 | 85 |
| MIMAT0033356 | str-miR-92-5p | 2 | _...... | 7 | 85 |
| MIMAT0033335 | str-miR-7880e-2-5p | 2 | _...... | 7 | 85 |
| MIMAT0033310 | str-miR-7880b-4-5p | 2 | _...... | 7 | 85 |
| MIMAT0033309 | str-miR-7880b-3-5p | 2 | _...... | 7 | 85 |
| MIMAT0033308 | str-miR-7880b-2-5p | 2 | _...... | 7 | 85 |
| MIMAT0032710 | ssa-miR-92a-4-5p | 2 | _...... | 7 | 85 |
| MIMAT0032707 | ssa-miR-92a-5p | 2 | _...... | 7 | 85 |
| MIMAT0030506 | prd-miR-7877-5p | 1 | ......_ | 6 | 85 |
| MIMAT0029053 | gga-miR-7449-3p | 3 | _...... | 8 | 85 |
| MIMAT0028640 | mdo-miR-7320-5p | 7 | _...... | 2 | 85 |
| MIMAT0028036 | mmu-miR-7066-5p | 3 | _...... | 8 | 85 |
| MIMAT0027821 | mmu-miR-6960-3p | 8 | _...... | 3 | 85 |
| MIMAT0027763 | mmu-miR-6931-3p | 7 | _...... | 2 | 85 |
| MIMAT0025701 | gga-miR-6607-5p | 1 | _...... | 6 | 85 |
| MIMAT0025524 | han-miR3440 | 3 | _...... | 8 | 85 |
| MIMAT0024290 | ggo-miR-296 | 3 | _...... | 8 | 85 |
| MIMAT0023678 | ame-miR-6054 | 3 | ......_ | 8 | 85 |
| MIMAT0023668 | ame-miR-92c | 2 | _...... | 7 | 85 |
| MIMAT0027088 | hsa-miR-5189-3p | 8 | _...... | 3 | 85 |
| MIMAT0020533 | ath-miR5027 | 3 | ......_ | 8 | 85 |
| MIMAT0019823 | hsa-miR-4714-3p | 6 | _...... | 1 | 85 |
| MIMAT0019637 | pma-miR-4603 | 3 | ......_ | 8 | 85 |
| MIMAT0022958 | ssc-miR-296-3p | 3 | _...... | 8 | 85 |
| MIMAT0016617 | cin-miR-4064-3p | 8 | ......_ | 3 | 85 |
| MIMAT0017694 | aly-miR853-3p | 6 | ......_ | 1 | 85 |
| MIMAT0017623 | aly-miR839-5p | 8 | _...... | 3 | 85 |
| MIMAT0017602 | aly-miR823-3p | 3 | _...... | 8 | 85 |
| MIMAT0015019 | hsa-miR-3147 | 1 | _...... | 6 | 85 |
| MIMAT0027007 | tgu-miR-92-1-5p | 2 | _...... | 7 | 85 |
| MIMAT0010015 | ppt-miR2078 | 1 | _...... | 6 | 85 |
| MIMAT0009170 | oan-miR-92a-2-5p | 2 | _...... | 7 | 85 |
| MIMAT0017331 | mmu-miR-1197-5p | 1 | ......_ | 6 | 85 |
| MIMAT0020881 | dme-miR-984-3p | 8 | _...... | 3 | 85 |
| MIMAT0005489 | dme-miR-973-5p | 2 | _...... | 7 | 85 |
| MIMAT0004261 | ath-miR839-5p | 8 | _...... | 3 | 85 |
| MIMAT0026709 | mdo-miR-92a-1-5p | 2 | _...... | 7 | 85 |
| MIMAT0031964 | dre-miR-125b-2-3p | 3 | _...... | 8 | 85 |
| MIMAT0031954 | dre-miR-92a-2-5p | 2 | _...... | 7 | 85 |
| MIMAT0031953 | dre-miR-92a-5p | 2 | _...... | 7 | 85 |
| MIMAT0026495 | gga-miR-92-5p | 2 | _...... | 7 | 85 |
| MIMAT0017107 | rno-miR-92a-1-5p | 2 | _...... | 7 | 85 |
| MIMAT0017066 | mmu-miR-92a-1-5p | 2 | _...... | 7 | 85 |
| MIMAT0004507 | hsa-miR-92a-1-5p | 2 | _...... | 7 | 85 |
