| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | cgtcaac | 7 | ||
| MIMAT0036499 | tch-miR-505-3p | 1 | ....... | 7 | 100 |
| MIMAT0036097 | chi-miR-2483-5p | 1 | ....... | 7 | 100 |
| MIMAT0034191 | gra-miR8761 | 8 | ....... | 2 | 100 |
| MIMAT0020231 | egr-miR-2c-5p | 2 | ....... | 8 | 100 |
| MIMAT0016636 | cin-miR-4074-5p | 8 | ....... | 2 | 100 |
| MIMAT0015928 | ppy-miR-505 | 1 | ....... | 7 | 100 |
| MIMAT0013229 | eca-miR-505 | 1 | ....... | 7 | 100 |
| MIMAT0012075 | bta-miR-2483-5p | 1 | ....... | 7 | 100 |
| MIMAT0009341 | bta-miR-505 | 1 | ....... | 7 | 100 |
| MIMAT0008178 | ptr-miR-505 | 1 | ....... | 7 | 100 |
| MIMAT0006369 | mml-miR-505-3p | 1 | ....... | 7 | 100 |
| MIMAT0003513 | mmu-miR-505-3p | 1 | ....... | 7 | 100 |
| MIMAT0002876 | hsa-miR-505-3p | 1 | ....... | 7 | 100 |
| MIMAT0035691 | bra-miR9566-5p | 8 | _...... | 3 | 85 |
| MIMAT0035397 | nve-miR-9436 | 6 | ......_ | 1 | 85 |
| MIMAT0035003 | efu-miR-9318a | 7 | _...... | 2 | 85 |
| MIMAT0034754 | eca-miR-9174 | 8 | _...... | 3 | 85 |
| MIMAT0034527 | eca-miR-8990 | 7 | _...... | 2 | 85 |
| MIMAT0034421 | cfa-miR-2483 | 2 | _...... | 7 | 85 |
| MIMAT0033568 | sma-miR-8432-5p | 8 | _...... | 3 | 85 |
| MIMAT0033552 | sma-miR-8424-5p | 1 | _...... | 6 | 85 |
| MIMAT0032872 | ppc-miR-2a-5p | 1 | ......_ | 6 | 85 |
| MIMAT0030829 | prd-miR-7964a-3p | 1 | _...... | 6 | 85 |
| MIMAT0026186 | cme-miR156j | 6 | _...... | 1 | 85 |
| MIMAT0025300 | mja-miR-6492 | 6 | _...... | 1 | 85 |
| MIMAT0025250 | ptc-miR6447 | 6 | ......_ | 1 | 85 |
| MIMAT0025244 | ptc-miR6441 | 8 | _...... | 3 | 85 |
| MIMAT0026464 | hme-miR-6302-2-5p | 8 | _...... | 3 | 85 |
| MIMAT0024228 | ggo-miR-505 | 1 | _...... | 6 | 85 |
| MIMAT0023980 | cgr-miR-505-3p | 1 | _...... | 6 | 85 |
| MIMAT0022991 | gma-miR397b-3p | 8 | ......_ | 3 | 85 |
| MIMAT0021425 | asu-miR-2a-5p | 1 | ......_ | 6 | 85 |
| MIMAT0019261 | oar-miR-758-5p | 8 | _...... | 3 | 85 |
| MIMAT0018277 | gma-miR4373 | 8 | _...... | 3 | 85 |
| MIMAT0018252 | gma-miR4360 | 8 | _...... | 3 | 85 |
| MIMAT0016008 | ppy-miR-563 | 8 | _...... | 3 | 85 |
| MIMAT0014319 | aae-miR-309b-5p | 1 | ......_ | 6 | 85 |
| MIMAT0006940 | oan-miR-1350 | 2 | _...... | 7 | 85 |
| MIMAT0017331 | mmu-miR-1197-5p | 8 | _...... | 3 | 85 |
| MIMAT0017316 | rno-miR-758-5p | 8 | _...... | 3 | 85 |
| MIMAT0003803 | bta-miR-380-5p | 8 | _...... | 3 | 85 |
| MIMAT0017235 | mmu-miR-758-5p | 8 | _...... | 3 | 85 |
| MIMAT0003380 | rno-miR-505-3p | 1 | _...... | 6 | 85 |
| MIMAT0003227 | hsa-miR-563 | 8 | _...... | 3 | 85 |
| MIMAT0015199 | zma-miR171j-5p | 8 | ......_ | 3 | 85 |
| MIMAT0000734 | hsa-miR-380-5p | 8 | _...... | 3 | 85 |
