| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | cgtgtgct | 8 | ||
| MIMAT0034746 | eca-miR-9168 | 7 | _....... | 1 | 87 |
| MIMAT0030991 | hsa-miR-8064 | 7 | _....... | 1 | 87 |
| MIMAT0032227 | lva-miR-2006-3p | 8 | _....... | 2 | 87 |
| MIMAT0032180 | pmi-miR-2006-3p | 8 | _....... | 2 | 87 |
| MIMAT0028983 | oan-miR-7417-3p | 2 | _....... | 8 | 87 |
| MIMAT0025306 | prv-miR-LLT3 | 8 | ......._ | 2 | 87 |
| MIMAT0024834 | hvu-miR6206 | 8 | ......._ | 2 | 87 |
| MIMAT0020048 | sko-miR-2006-3p | 8 | _....... | 2 | 87 |
| MIMAT0019600 | pma-miR-4568 | 8 | _....... | 2 | 87 |
| MIMAT0014362 | cqu-miR-988-5p | 2 | _....... | 8 | 87 |
| MIMAT0014280 | aae-miR-988-5p | 1 | _....... | 7 | 87 |
| MIMAT0009747 | spu-miR-2006 | 8 | _....... | 2 | 87 |
| MIMAT0003483 | mmu-miR-696 | 2 | ......._ | 8 | 87 |
| MIMAT0033700 | pxy-miR-8492 | 8 | ......t. | 1 | 87 |
| MIMAT0030973 | stu-miR164-3p | 1 | .a...... | 8 | 87 |
| MIMAT0023688 | ame-miR-6047b | 8 | .c...... | 1 | 87 |
| MIMAT0021040 | hsa-miR-5008-3p | 1 | .c...... | 8 | 87 |
| MIMAT0022926 | osa-miR528-3p | 1 | .c...... | 8 | 87 |
| MIMAT0036836 | oha-miR-218-5p | 2 | __...... | 7 | 75 |
| MIMAT0036732 | oha-miR-147-3p | 1 | _......_ | 6 | 75 |
| MIMAT0036514 | tch-miR-218-5p | 2 | __...... | 7 | 75 |
| MIMAT0036512 | tch-miR-147b | 1 | _......_ | 6 | 75 |
| MIMAT0036066 | chi-miR-218 | 2 | __...... | 7 | 75 |
| MIMAT0036034 | chi-miR-197-5p | 3 | __...... | 8 | 75 |
| MIMAT0035975 | chi-miR-147-3p | 1 | _......_ | 6 | 75 |
| MIMAT0035765 | tae-miR9657a-3p | 1 | __...... | 6 | 75 |
| MIMAT0035319 | gsa-miR-9389-3p | 2 | _......_ | 7 | 75 |
| MIMAT0035068 | efu-miR-218b | 2 | __...... | 7 | 75 |
| MIMAT0035036 | efu-miR-218a | 2 | __...... | 7 | 75 |
| MIMAT0034895 | efu-miR-9265 | 8 | __...... | 3 | 75 |
| MIMAT0034886 | efu-miR-9189c | 1 | __...... | 6 | 75 |
| MIMAT0034877 | efu-miR-9258 | 2 | _......_ | 7 | 75 |
| MIMAT0034532 | eca-miR-8986b | 3 | _......_ | 8 | 75 |
| MIMAT0034523 | eca-miR-8986a | 3 | _......_ | 8 | 75 |
| MIMAT0034460 | eca-miR-8932 | 1 | __...... | 6 | 75 |
| MIMAT0034389 | cfa-miR-8885 | 3 | __...... | 8 | 75 |
| MIMAT0032772 | ath-miR8173 | 2 | __...... | 7 | 75 |
| MIMAT0032736 | ssa-miR-8157-5p | 7 | __...... | 2 | 75 |
| MIMAT0032524 | ssa-miR-218-5p | 2 | __...... | 7 | 75 |
| MIMAT0031667 | bbe-miR-31-3p | 3 | __...... | 8 | 75 |
| MIMAT0031333 | stu-miR398b-5p | 3 | _......_ | 8 | 75 |
| MIMAT0030045 | oar-miR-218a | 2 | __...... | 7 | 75 |
| MIMAT0029473 | ipu-miR-218b | 2 | __...... | 7 | 75 |
| MIMAT0029472 | ipu-miR-218a | 2 | __...... | 7 | 75 |
| MIMAT0029098 | gga-miR-7472-5p | 2 | __...... | 7 | 75 |
| MIMAT0029027 | oan-miR-7436-3p | 1 | _......_ | 6 | 75 |
| MIMAT0028965 | oan-miR-7409-3p | 2 | _......_ | 7 | 75 |
| MIMAT0028681 | mdo-miR-7336-3p | 8 | _......_ | 3 | 75 |
| MIMAT0028225 | hsa-miR-7157-3p | 3 | __...... | 8 | 75 |
| MIMAT0026272 | ccr-miR-218b | 2 | __...... | 7 | 75 |
| MIMAT0026271 | ccr-miR-218a | 2 | __...... | 7 | 75 |
| MIMAT0027957 | mmu-miR-7026-3p | 1 | __...... | 6 | 75 |
| MIMAT0027955 | mmu-miR-7025-3p | 7 | __...... | 2 | 75 |
| MIMAT0027921 | mmu-miR-7008-3p | 1 | __...... | 6 | 75 |
| MIMAT0027907 | mmu-miR-7002-3p | 2 | __...... | 7 | 75 |
| MIMAT0027831 | mmu-miR-6965-3p | 3 | __...... | 8 | 75 |
| MIMAT0027376 | hsa-miR-6737-3p | 3 | __...... | 8 | 75 |
| MIMAT0025636 | gga-miR-6565-3p | 3 | __...... | 8 | 75 |
| MIMAT0025527 | hhi-miR-147b | 1 | _......_ | 6 | 75 |
| MIMAT0025371 | ssc-miR-218 | 2 | __...... | 7 | 75 |
| MIMAT0023855 | cgr-miR-218a | 2 | __...... | 7 | 75 |
| MIMAT0023777 | cgr-miR-147 | 1 | _......_ | 6 | 75 |
| MIMAT0023571 | tca-miR-6015-5p | 7 | _......_ | 2 | 75 |
| MIMAT0022609 | ola-miR-218b | 2 | __...... | 7 | 75 |
| MIMAT0022529 | ola-miR-218a | 2 | __...... | 7 | 75 |
| MIMAT0023022 | bra-miR5723 | 3 | __...... | 8 | 75 |
| MIMAT0022325 | cin-miR-5601-5p | 2 | __...... | 7 | 75 |
| MIMAT0022686 | hvsa-miR-HSUR2-5p | 3 | __...... | 8 | 75 |
| MIMAT0021880 | aca-miR-218-5p | 2 | __...... | 7 | 75 |
| MIMAT0021779 | aca-miR-147 | 1 | _......_ | 6 | 75 |
| MIMAT0021571 | asu-miR-5355-3p | 1 | _......_ | 6 | 75 |
| MIMAT0021378 | isc-miR-5308 | 3 | __...... | 8 | 75 |
| MIMAT0021146 | mtr-miR5213-5p | 3 | ......__ | 8 | 75 |
| MIMAT0020631 | mmu-miR-466q | 8 | _......_ | 3 | 75 |
| MIMAT0020611 | mmu-miR-5104 | 2 | __...... | 7 | 75 |
| MIMAT0020589 | ssc-miR-218b | 2 | __...... | 7 | 75 |
| MIMAT0020160 | dme-miR-4949-5p | 8 | _......_ | 3 | 75 |
| MIMAT0020514 | dme-miR-4908-3p | 2 | __...... | 7 | 75 |
| MIMAT0019531 | pma-miR-218b | 2 | __...... | 7 | 75 |
| MIMAT0019529 | pma-miR-218a-5p | 2 | __...... | 7 | 75 |
| MIMAT0019522 | pma-miR-210 | 1 | _......_ | 6 | 75 |
| MIMAT0019480 | pma-miR-147 | 1 | _......_ | 6 | 75 |
| MIMAT0018815 | tca-miR-3865-3p | 8 | __...... | 3 | 75 |
| MIMAT0018626 | tca-miR-3804b-5p | 8 | _......_ | 3 | 75 |
| MIMAT0018624 | tca-miR-3804a-5p | 8 | _......_ | 3 | 75 |
| MIMAT0018549 | ame-miR-3773 | 8 | __...... | 3 | 75 |
| MIMAT0018010 | vvi-miR2950-3p | 3 | _......_ | 8 | 75 |
| MIMAT0022961 | ssc-miR-218-5p | 2 | __...... | 7 | 75 |
| MIMAT0016555 | cin-miR-4033-5p | 8 | __...... | 3 | 75 |
| MIMAT0016524 | cin-miR-4017-5p | 1 | __...... | 6 | 75 |
| MIMAT0017890 | rno-miR-3590-3p | 7 | __...... | 2 | 75 |
| MIMAT0016082 | ppy-miR-648 | 3 | _......_ | 8 | 75 |
| MIMAT0016074 | ppy-miR-636 | 1 | __...... | 6 | 75 |
| MIMAT0015770 | ppy-miR-147b | 1 | _......_ | 6 | 75 |
| MIMAT0014893 | mmu-miR-466n-5p | 3 | _......_ | 8 | 75 |
| MIMAT0014882 | mmu-miR-466m-5p | 2 | _......_ | 7 | 75 |
| MIMAT0014606 | tgu-miR-147 | 1 | _......_ | 6 | 75 |
| MIMAT0014522 | tgu-miR-218-5p | 2 | __...... | 7 | 75 |
| MIMAT0014348 | ghr-miR2950 | 3 | _......_ | 8 | 75 |
| MIMAT0012928 | eca-miR-218 | 2 | __...... | 7 | 75 |
| MIMAT0012908 | eca-miR-147b | 1 | _......_ | 6 | 75 |
| MIMAT0012757 | mdo-miR-147b | 1 | _......_ | 6 | 75 |
| MIMAT0012201 | dme-miR-2493-3p | 2 | ......__ | 7 | 75 |
| MIMAT0012037 | bta-miR-2455 | 3 | __...... | 8 | 75 |
| MIMAT0011966 | bta-miR-2408 | 3 | ......__ | 8 | 75 |
| MIMAT0011956 | bta-miR-2400 | 8 | __...... | 3 | 75 |
| MIMAT0011256 | sme-miR-2162-5p | 1 | __...... | 6 | 75 |
| MIMAT0010151 | mcv-miR-M1-3p | 1 | __...... | 6 | 75 |
| MIMAT0009874 | cfa-miR-147 | 1 | _......_ | 6 | 75 |
| MIMAT0019141 | bfl-miR-31-3p | 2 | __...... | 7 | 75 |
| MIMAT0017346 | mmu-miR-669m-5p | 2 | _......_ | 7 | 75 |
| MIMAT0009237 | bta-miR-147 | 1 | _......_ | 6 | 75 |
| MIMAT0008040 | ptr-miR-147b | 1 | _......_ | 6 | 75 |
| MIMAT0006672 | cfa-miR-218 | 2 | __...... | 7 | 75 |
| MIMAT0006486 | mml-miR-648 | 3 | _......_ | 8 | 75 |
| MIMAT0006479 | mml-miR-636 | 1 | __...... | 6 | 75 |
| MIMAT0006207 | mml-miR-147b | 1 | _......_ | 6 | 75 |
| MIMAT0007587 | gga-miR-1695 | 7 | __...... | 2 | 75 |
| MIMAT0006140 | mdo-miR-1541 | 3 | _......_ | 8 | 75 |
| MIMAT0005958 | osa-miR1424 | 8 | _......_ | 3 | 75 |
| MIMAT0007177 | oan-miR-1390-3p | 7 | _......_ | 2 | 75 |
| MIMAT0007003 | oan-miR-147 | 1 | _......_ | 6 | 75 |
| MIMAT0006815 | oan-miR-218-5p | 2 | __...... | 7 | 75 |
| MIMAT0005848 | mmu-miR-466j | 2 | _......_ | 7 | 75 |
| MIMAT0005844 | mmu-miR-466f | 2 | ......__ | 7 | 75 |
| MIMAT0005297 | rno-miR-147 | 1 | _......_ | 6 | 75 |
| MIMAT0004968 | cre-miR913-5p | 7 | _......_ | 2 | 75 |
| MIMAT0004928 | hsa-miR-147b | 1 | _......_ | 6 | 75 |
| MIMAT0004884 | mmu-miR-466h-5p | 2 | _......_ | 7 | 75 |
| MIMAT0004881 | mmu-miR-466f-5p | 3 | ......__ | 8 | 75 |
| MIMAT0004857 | mmu-miR-147-3p | 1 | _......_ | 6 | 75 |
| MIMAT0004133 | mdo-miR-218-5p | 2 | __...... | 7 | 75 |
| MIMAT0032015 | cel-miR-785-5p | 6 | __...... | 1 | 75 |
| MIMAT0003798 | bta-miR-218 | 2 | __...... | 7 | 75 |
| MIMAT0003631 | xtr-miR-218 | 2 | __...... | 7 | 75 |
| MIMAT0003422 | ebv-miR-BART11-3p | 8 | _......_ | 3 | 75 |
| MIMAT0003352 | gga-miR-147 | 1 | _......_ | 6 | 75 |
| MIMAT0003318 | hsa-miR-648 | 3 | _......_ | 8 | 75 |
| MIMAT0003306 | hsa-miR-636 | 1 | __...... | 6 | 75 |
| MIMAT0026618 | hsa-miR-585-5p | 8 | __...... | 3 | 75 |
| MIMAT0002994 | tni-miR-218a | 2 | __...... | 7 | 75 |
| MIMAT0002993 | fru-miR-218a | 2 | __...... | 7 | 75 |
| MIMAT0002986 | tni-miR-218b | 2 | __...... | 7 | 75 |
| MIMAT0002985 | fru-miR-218b | 2 | __...... | 7 | 75 |
| MIMAT0002574 | mml-miR-218-5p | 2 | __...... | 7 | 75 |
| MIMAT0002573 | mne-miR-218 | 2 | __...... | 7 | 75 |
| MIMAT0002572 | lla-miR-218 | 2 | __...... | 7 | 75 |
| MIMAT0002571 | sla-miR-218 | 2 | __...... | 7 | 75 |
| MIMAT0002570 | ptr-miR-218 | 2 | __...... | 7 | 75 |
| MIMAT0002569 | ppy-miR-218 | 2 | __...... | 7 | 75 |
| MIMAT0002568 | lca-miR-218 | 2 | __...... | 7 | 75 |
| MIMAT0002567 | ppa-miR-218 | 2 | __...... | 7 | 75 |
| MIMAT0002566 | age-miR-218 | 2 | __...... | 7 | 75 |
| MIMAT0002565 | ggo-miR-218 | 2 | __...... | 7 | 75 |
| MIMAT0001869 | dre-miR-218b | 2 | __...... | 7 | 75 |
| MIMAT0001868 | dre-miR-218a | 2 | __...... | 7 | 75 |
| MIMAT0001144 | gga-miR-218-5p | 2 | __...... | 7 | 75 |
| MIMAT0000888 | rno-miR-218a-5p | 2 | __...... | 7 | 75 |
| MIMAT0000663 | mmu-miR-218-5p | 2 | __...... | 7 | 75 |
| MIMAT0000275 | hsa-miR-218-5p | 2 | __...... | 7 | 75 |
