| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | cgttatg | 7 | ||
| MIMAT0028187 | dev-miR-D14-3p | 2 | ....... | 8 | 100 |
| MIMAT0037236 | ata-miR9863b-5p | 2 | _...... | 7 | 85 |
| MIMAT0037104 | ata-miR9863a-5p | 2 | _...... | 7 | 85 |
| MIMAT0035335 | gsa-miR-76b-3p | 3 | ......_ | 8 | 85 |
| MIMAT0033347 | str-miR-72-3p | 2 | _...... | 7 | 85 |
| MIMAT0033174 | ppc-miR-8318-5p | 1 | _...... | 6 | 85 |
| MIMAT0030795 | prd-miR-7954-3p | 8 | ......_ | 3 | 85 |
| MIMAT0030371 | ptc-miR7812 | 3 | _...... | 8 | 85 |
| MIMAT0030274 | bdi-miR7764-5p | 6 | _...... | 1 | 85 |
| MIMAT0021578 | asu-miR-5358a-5p | 3 | _...... | 8 | 85 |
| MIMAT0018640 | tca-miR-3809-5p | 8 | _...... | 3 | 85 |
| MIMAT0018621 | tca-miR-3802-3p | 3 | ......_ | 8 | 85 |
| MIMAT0017928 | aly-miR4239 | 3 | ......_ | 8 | 85 |
| MIMAT0015441 | bmo-miR-3257-3p | 3 | ......_ | 8 | 85 |
| MIMAT0014890 | mmu-miR-669p-3p | 6 | _...... | 1 | 85 |
| MIMAT0014703 | hsv2-miR-H21 | 6 | ......_ | 1 | 85 |
| MIMAT0016951 | rlcv-miR-rL1-27-3p | 8 | _...... | 3 | 85 |
| MIMAT0013682 | bmo-miR-2786 | 3 | _...... | 8 | 85 |
| MIMAT0012395 | dps-miR-2566a-3p | 8 | _...... | 3 | 85 |
| MIMAT0011386 | sbi-miR821b | 3 | _...... | 8 | 85 |
| MIMAT0017347 | mmu-miR-669o-3p | 7 | _...... | 2 | 85 |
| MIMAT0017251 | mmu-miR-669a-3-3p | 7 | _...... | 2 | 85 |
| MIMAT0017243 | mmu-miR-669a-3p | 7 | _...... | 2 | 85 |
| MIMAT0003420 | ebv-miR-BART10-3p | 8 | _...... | 3 | 85 |
