| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | ctacacc | 7 | ||
| MIMAT0033488 | str-miR-8397-5p | 8 | ....... | 2 | 100 |
| MIMAT0027330 | ppe-miR6294 | 8 | ....... | 2 | 100 |
| MIMAT0016784 | cin-miR-4175-3p | 7 | ....... | 1 | 100 |
| MIMAT0019191 | rlcv-miR-rL1-26-5p | 2 | ....... | 8 | 100 |
| MIMAT0037049 | ssc-miR-9831-3p | 8 | ......_ | 3 | 85 |
| MIMAT0035345 | gsa-miR-9399-3p | 7 | _...... | 2 | 85 |
| MIMAT0034109 | gra-miR8720 | 8 | ......_ | 3 | 85 |
| MIMAT0033326 | str-miR-252a-3p | 3 | ......_ | 8 | 85 |
| MIMAT0030731 | prd-miR-7936-3p | 6 | ......_ | 1 | 85 |
| MIMAT0030664 | prd-miR-7915-5p | 1 | ......_ | 6 | 85 |
| MIMAT0029765 | cbn-miR-248 | 1 | ......_ | 6 | 85 |
| MIMAT0028910 | mdo-miR-7398l-5p | 8 | ......_ | 3 | 85 |
| MIMAT0028902 | mdo-miR-7398r-5p | 8 | ......_ | 3 | 85 |
| MIMAT0028888 | mdo-miR-7395-5p | 1 | _...... | 6 | 85 |
| MIMAT0027444 | hsa-miR-6772-5p | 8 | _...... | 3 | 85 |
| MIMAT0025752 | gga-miR-6652-5p | 8 | _...... | 3 | 85 |
| MIMAT0025408 | tgu-miR-1789 | 8 | _...... | 3 | 85 |
| MIMAT0018827 | tca-miR-3867-3p | 1 | _...... | 6 | 85 |
| MIMAT0016911 | hsa-miR-4280 | 8 | ......_ | 3 | 85 |
| MIMAT0013580 | cte-miR-2711 | 8 | _...... | 3 | 85 |
| MIMAT0012514 | dsi-miR-982b | 3 | ......_ | 8 | 85 |
| MIMAT0007702 | gga-miR-1789 | 8 | _...... | 3 | 85 |
| MIMAT0015248 | cin-let-7a-2-3p | 8 | ......_ | 3 | 85 |
| MIMAT0015220 | hsv1-miR-H1-3p | 1 | _...... | 6 | 85 |
