| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | ctaggccg | 8 | ||
| MIMAT0024962 | hme-miR-2796 | 2 | _....... | 8 | 87 |
| MIMAT0024461 | mse-miR-2796 | 2 | _....... | 8 | 87 |
| MIMAT0023086 | tur-miR-92-5p | 8 | ......._ | 2 | 87 |
| MIMAT0018713 | tca-miR-2796-3p | 2 | _....... | 8 | 87 |
| MIMAT0018591 | ame-miR-2796 | 2 | _....... | 8 | 87 |
| MIMAT0016216 | ppy-miR-1295 | 2 | _....... | 8 | 87 |
| MIMAT0014790 | api-miR-2796 | 2 | _....... | 8 | 87 |
| MIMAT0013697 | bmo-miR-2796-3p | 2 | _....... | 8 | 87 |
| MIMAT0010038 | mtr-miR2088-5p | 8 | ......._ | 2 | 87 |
| MIMAT0008014 | ptr-miR-1295 | 2 | _....... | 8 | 87 |
| MIMAT0005885 | hsa-miR-1295a | 2 | _....... | 8 | 87 |
| MIMAT0005415 | cre-miR1162-5p | 7 | _....... | 1 | 87 |
| MIMAT0020560 | bdi-miR5059 | 8 | .c...... | 1 | 87 |
| MIMAT0018587 | ame-miR-3800 | 1 | .g...... | 8 | 87 |
| MIMAT0014388 | cqu-miR-100-3p | 1 | .a...... | 8 | 87 |
| MIMAT0035709 | bhv5-miR-B12 | 2 | __...... | 7 | 75 |
| MIMAT0035019 | efu-miR-9279b | 3 | __...... | 8 | 75 |
| MIMAT0034928 | efu-miR-337 | 7 | ......__ | 2 | 75 |
| MIMAT0032854 | ppc-miR-235-5p | 1 | __...... | 6 | 75 |
| MIMAT0032792 | cel-miR-8189-3p | 8 | _......_ | 3 | 75 |
| MIMAT0032402 | ssa-miR-15d-3p | 2 | __...... | 7 | 75 |
| MIMAT0030725 | prd-miR-7910b-3p | 2 | _......_ | 7 | 75 |
| MIMAT0030690 | prd-miR-7923-5p | 7 | __...... | 2 | 75 |
| MIMAT0030632 | prd-miR-7939c-5p | 3 | _......_ | 8 | 75 |
| MIMAT0030471 | prd-miR-84-3p | 6 | __...... | 1 | 75 |
| MIMAT0028607 | mdo-miR-7306-3p | 8 | __...... | 3 | 75 |
| MIMAT0028263 | mml-miR-7165-3p | 7 | __...... | 2 | 75 |
| MIMAT0028250 | mml-miR-1245-5p | 2 | _......_ | 7 | 75 |
| MIMAT0028111 | hsa-miR-7107-5p | 7 | __...... | 2 | 75 |
| MIMAT0028055 | mmu-miR-7074-3p | 1 | _......_ | 6 | 75 |
| MIMAT0027738 | mmu-miR-6919-5p | 1 | _......_ | 6 | 75 |
| MIMAT0025351 | pde-miR1314 | 7 | __...... | 2 | 75 |
| MIMAT0023714 | hsa-miR-6089 | 3 | __...... | 8 | 75 |
| MIMAT0022498 | hsa-miR-5704 | 2 | _......_ | 7 | 75 |
| MIMAT0022294 | hsa-miR-1295b-3p | 3 | _......_ | 8 | 75 |
| MIMAT0021600 | asu-miR-5367-5p | 7 | __...... | 2 | 75 |
| MIMAT0021485 | asu-miR-92-5p | 1 | __...... | 6 | 75 |
| MIMAT0019950 | hsa-miR-1245b-5p | 1 | _......_ | 6 | 75 |
| MIMAT0019829 | hsa-miR-4717-5p | 1 | _......_ | 6 | 75 |
| MIMAT0018754 | tca-miR-3850-5p | 1 | __...... | 6 | 75 |
| MIMAT0016207 | ppy-miR-1285a | 2 | ......__ | 7 | 75 |
| MIMAT0016079 | ppy-miR-645 | 2 | ......__ | 7 | 75 |
| MIMAT0015680 | nvi-miR-2796 | 1 | __...... | 6 | 75 |
| MIMAT0017681 | aly-miR402-5p | 8 | _......_ | 3 | 75 |
| MIMAT0015497 | bmo-miR-3308-3p | 1 | ......__ | 6 | 75 |
| MIMAT0015001 | hsa-miR-3135a | 7 | ......__ | 2 | 75 |
| MIMAT0014705 | hsv2-miR-H23-5p | 1 | __...... | 6 | 75 |
| MIMAT0012790 | mml-miR-1234 | 7 | __...... | 2 | 75 |
| MIMAT0012368 | dps-miR-2554-5p | 1 | _......_ | 6 | 75 |
| MIMAT0012243 | dps-miR-92c-5p | 1 | __...... | 6 | 75 |
| MIMAT0011471 | cbr-miR-90b-5p | 6 | __...... | 1 | 75 |
| MIMAT0009131 | pta-miR1314 | 7 | __...... | 2 | 75 |
| MIMAT0032060 | dvi-miR-310-5p | 1 | __...... | 6 | 75 |
| MIMAT0008298 | ptr-miR-645 | 2 | ......__ | 7 | 75 |
| MIMAT0007967 | ptr-miR-1234 | 7 | __...... | 2 | 75 |
| MIMAT0006618 | cfa-miR-1836 | 1 | _......_ | 6 | 75 |
| MIMAT0007541 | gga-miR-1660 | 1 | _......_ | 6 | 75 |
| MIMAT0005589 | hsa-miR-1234-3p | 7 | __...... | 2 | 75 |
| MIMAT0004383 | ppt-miR898a-3p | 2 | ......__ | 7 | 75 |
| MIMAT0004081 | osa-miR820c | 7 | __...... | 2 | 75 |
| MIMAT0004080 | osa-miR820b | 7 | __...... | 2 | 75 |
| MIMAT0004079 | osa-miR820a | 7 | __...... | 2 | 75 |
| MIMAT0003315 | hsa-miR-645 | 2 | ......__ | 7 | 75 |
| MIMAT0002186 | kshv-miR-K12-8-3p | 1 | ......__ | 6 | 75 |
| MIMAT0003395 | dre-miR-15a-3p | 2 | __...... | 7 | 75 |
| MIMAT0020819 | dme-miR-92b-5p | 1 | __...... | 6 | 75 |
