| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | ctagttgt | 8 | ||
| MIMAT0010131 | ebv-miR-BART21-3p | 1 | ........ | 8 | 100 |
| MIMAT0031672 | bbe-miR-34b-3p | 8 | _....... | 2 | 87 |
| MIMAT0028345 | mml-miR-549b-3p | 8 | _....... | 2 | 87 |
| MIMAT0028279 | mml-miR-4703-3p | 2 | _....... | 8 | 87 |
| MIMAT0016946 | rlcv-miR-rL1-23-3p | 2 | _....... | 8 | 87 |
| MIMAT0017383 | ssc-miR-708-3p | 7 | ......._ | 1 | 87 |
| MIMAT0026952 | mml-miR-708-3p | 7 | ......._ | 1 | 87 |
| MIMAT0010002 | bfl-miR-34b-3p | 8 | _....... | 2 | 87 |
| MIMAT0009421 | mmu-miR-669o-5p | 1 | _....... | 7 | 87 |
| MIMAT0005332 | rno-miR-708-3p | 7 | ......._ | 1 | 87 |
| MIMAT0004927 | hsa-miR-708-3p | 7 | ......._ | 1 | 87 |
| MIMAT0003498 | mmu-miR-708-3p | 7 | ......._ | 1 | 87 |
| MIMAT0003479 | mmu-miR-669c-5p | 2 | _....... | 8 | 87 |
| MIMAT0030419 | hsa-miR-7844-5p | 8 | ......t. | 1 | 87 |
| MIMAT0003398 | dre-miR-19a-5p | 1 | ......t. | 8 | 87 |
| MIMAT0036928 | oha-miR-449c-3p | 7 | _......_ | 2 | 75 |
| MIMAT0036755 | oha-miR-1805-5p | 2 | __...... | 7 | 75 |
| MIMAT0036200 | chi-miR-382-5p | 3 | __...... | 8 | 75 |
| MIMAT0035383 | nve-miR-9424a | 3 | _......_ | 8 | 75 |
| MIMAT0034845 | efu-miR-9236a | 3 | ......__ | 8 | 75 |
| MIMAT0034690 | eca-miR-9139 | 7 | ......__ | 2 | 75 |
| MIMAT0034258 | gra-miR7484n | 1 | ......__ | 6 | 75 |
| MIMAT0033884 | atr-miR8595 | 3 | ......__ | 8 | 75 |
| MIMAT0033674 | sma-miR-8476-3p | 1 | _......_ | 6 | 75 |
| MIMAT0033534 | sma-miR-8415-5p | 1 | _......_ | 6 | 75 |
| MIMAT0032782 | ath-miR8183 | 3 | _......_ | 8 | 75 |
| MIMAT0032532 | ssa-miR-219c-2-3p | 3 | __...... | 8 | 75 |
| MIMAT0030510 | prd-miR-35b-5p | 6 | ......__ | 1 | 75 |
| MIMAT0030261 | bdi-miR7757-3p.1 | 3 | _......_ | 8 | 75 |
| MIMAT0030205 | bdi-miR7717c-3p | 2 | _......_ | 7 | 75 |
| MIMAT0030129 | bdi-miR5185m-5p | 3 | ......__ | 8 | 75 |
| MIMAT0030125 | bdi-miR5185k-5p | 3 | ......__ | 8 | 75 |
| MIMAT0030123 | bdi-miR5185j-5p | 3 | ......__ | 8 | 75 |
| MIMAT0030121 | bdi-miR5185i-5p | 3 | ......__ | 8 | 75 |
| MIMAT0030119 | bdi-miR5185h-5p | 3 | ......__ | 8 | 75 |
| MIMAT0030117 | bdi-miR5185g-5p | 3 | ......__ | 8 | 75 |
| MIMAT0030115 | bdi-miR5185f-5p | 3 | ......__ | 8 | 75 |
| MIMAT0030113 | bdi-miR5185e-5p | 3 | ......__ | 8 | 75 |
| MIMAT0030111 | bdi-miR5185d-5p | 3 | ......__ | 8 | 75 |
| MIMAT0030109 | bdi-miR5185c-5p | 3 | ......__ | 8 | 75 |
| MIMAT0030099 | bdi-miR5167b-5p | 2 | ......__ | 7 | 75 |
| MIMAT0032230 | lva-miR-2009-3p | 3 | __...... | 8 | 75 |
| MIMAT0032183 | pmi-miR-2009-3p | 3 | __...... | 8 | 75 |
| MIMAT0029820 | mmu-miR-7657-5p | 3 | _......_ | 8 | 75 |
| MIMAT0029475 | ipu-miR-219b | 3 | __...... | 8 | 75 |
| MIMAT0029031 | gga-miR-7438-3p | 3 | __...... | 8 | 75 |
| MIMAT0028877 | mdo-miR-7390-3p | 2 | __...... | 7 | 75 |
| MIMAT0028868 | mdo-miR-7388a-5p | 1 | __...... | 6 | 75 |
| MIMAT0028690 | mdo-miR-1805-5p | 1 | __...... | 6 | 75 |
| MIMAT0028291 | mml-miR-7175-3p | 8 | _......_ | 3 | 75 |
| MIMAT0026423 | sbi-miR5568d-3p | 3 | __...... | 8 | 75 |
| MIMAT0026420 | sbi-miR6225-5p | 6 | ......__ | 1 | 75 |
| MIMAT0028104 | ddi-miR-7101 | 2 | _......_ | 7 | 75 |
| MIMAT0025592 | gga-miR-6544-3p | 2 | __...... | 7 | 75 |
| MIMAT0025447 | pol-miR-219-3p | 3 | __...... | 8 | 75 |
| MIMAT0024594 | bta-miR-6122-5p | 3 | __...... | 8 | 75 |
| MIMAT0024295 | ggo-miR-3923 | 6 | ......__ | 1 | 75 |
| MIMAT0023947 | cgr-miR-382 | 3 | __...... | 8 | 75 |
| MIMAT0023577 | tca-miR-6018-5p | 1 | ......__ | 6 | 75 |
| MIMAT0023070 | tur-miR-210-5p | 1 | __...... | 6 | 75 |
| MIMAT0022396 | ath-miR5636 | 3 | _......_ | 8 | 75 |
| MIMAT0022118 | osa-miR5485 | 8 | __...... | 3 | 75 |
| MIMAT0022073 | aca-miR-5408b | 6 | __...... | 1 | 75 |
| MIMAT0022015 | aca-miR-449c-3p | 7 | _......_ | 2 | 75 |
| MIMAT0021807 | aca-miR-1805-5p | 1 | __...... | 6 | 75 |
| MIMAT0022997 | gma-miR4415b-5p | 2 | __...... | 7 | 75 |
| MIMAT0020735 | bdi-miR5185b-5p | 3 | ......__ | 8 | 75 |
| MIMAT0020734 | bdi-miR5185a-5p | 3 | ......__ | 8 | 75 |
| MIMAT0021112 | osa-miR5159 | 6 | ......__ | 1 | 75 |
| MIMAT0021092 | osa-miR5147 | 6 | __...... | 1 | 75 |
| MIMAT0019802 | hsa-miR-4703-3p | 3 | _......_ | 8 | 75 |
| MIMAT0019729 | hsa-miR-4661-5p | 6 | ......__ | 1 | 75 |
| MIMAT0019306 | oar-miR-382-5p | 3 | __...... | 8 | 75 |
| MIMAT0018343 | gma-miR4415a-5p | 2 | __...... | 7 | 75 |
| MIMAT0018198 | hsa-miR-3923 | 6 | ......__ | 1 | 75 |
| MIMAT0018829 | tca-miR-3868-3p | 8 | _......_ | 3 | 75 |
| MIMAT0018732 | tca-miR-3843-5p | 1 | __...... | 6 | 75 |
| MIMAT0017956 | ssc-miR-382 | 2 | __...... | 7 | 75 |
| MIMAT0016704 | cin-miR-4114-5p | 3 | __...... | 8 | 75 |
| MIMAT0016538 | cin-miR-4023-3p | 3 | __...... | 8 | 75 |
| MIMAT0015996 | ppy-miR-549 | 8 | __...... | 3 | 75 |
| MIMAT0015872 | ppy-miR-382 | 3 | __...... | 8 | 75 |
| MIMAT0015599 | bmo-miR-3395 | 3 | ......__ | 8 | 75 |
| MIMAT0015591 | bmo-miR-2733i-5p | 1 | __...... | 6 | 75 |
| MIMAT0014889 | mmu-miR-669p-5p | 1 | __...... | 6 | 75 |
| MIMAT0014620 | tgu-miR-1805-5p | 1 | __...... | 6 | 75 |
| MIMAT0013813 | osa-miR2866 | 2 | ......__ | 7 | 75 |
| MIMAT0013799 | bmo-miR-2859 | 6 | _......_ | 1 | 75 |
| MIMAT0013150 | eca-miR-382 | 3 | __...... | 8 | 75 |
| MIMAT0012164 | sme-miR-2173-5p | 7 | __...... | 2 | 75 |
| MIMAT0010030 | mtr-miR1507-5p | 3 | __...... | 8 | 75 |
| MIMAT0009777 | nve-miR-2028-3p | 8 | ......__ | 3 | 75 |
| MIMAT0009750 | spu-miR-2009 | 3 | __...... | 8 | 75 |
| MIMAT0009418 | mmu-miR-669l-5p | 1 | __...... | 6 | 75 |
| MIMAT0009308 | bta-miR-382 | 3 | __...... | 8 | 75 |
| MIMAT0008229 | ptr-miR-549 | 8 | __...... | 3 | 75 |
| MIMAT0008134 | ptr-miR-382 | 3 | __...... | 8 | 75 |
| MIMAT0006311 | mml-miR-382-5p | 3 | __...... | 8 | 75 |
| MIMAT0007722 | gga-miR-1805-5p | 2 | __...... | 7 | 75 |
| MIMAT0017327 | mmu-miR-669f-5p | 1 | __...... | 6 | 75 |
| MIMAT0003477 | mmu-miR-669a-5p | 1 | __...... | 6 | 75 |
| MIMAT0003333 | hsa-miR-549a | 8 | __...... | 3 | 75 |
| MIMAT0003201 | rno-miR-382-5p | 3 | __...... | 8 | 75 |
| MIMAT0031989 | dre-miR-219-3p | 3 | __...... | 8 | 75 |
| MIMAT0001574 | hcmv-miR-UL22A-5p | 7 | ......__ | 2 | 75 |
| MIMAT0001329 | osa-miR413 | 1 | ......__ | 6 | 75 |
| MIMAT0017159 | rno-miR-214-5p | 3 | __...... | 8 | 75 |
| MIMAT0000747 | mmu-miR-382-5p | 3 | __...... | 8 | 75 |
| MIMAT0000737 | hsa-miR-382-5p | 3 | __...... | 8 | 75 |
| MIMAT0020824 | dme-miR-303-3p | 1 | ......__ | 6 | 75 |
