| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | ctccgga | 7 | ||
| MIMAT0017775 | esi-miR3459-5p | 7 | ....... | 1 | 100 |
| MIMAT0017775 | esi-miR3459-5p | 1 | _...... | 6 | 85 |
| MIMAT0017749 | esi-miR3466-5p | 8 | ....... | 2 | 100 |
| MIMAT0017749 | esi-miR3466-5p | 2 | _...... | 7 | 85 |
| MIMAT0026552 | hcmv-miR-UL112-5p | 2 | ....... | 8 | 100 |
| MIMAT0026552 | hcmv-miR-UL112-5p | 8 | _...... | 3 | 85 |
| MIMAT0035104 | efu-miR-9340 | 6 | _...... | 1 | 85 |
| MIMAT0035104 | efu-miR-9340 | 1 | _...... | 6 | 85 |
| MIMAT0031711 | bbe-miR-4904-5p | 8 | ......_ | 3 | 85 |
| MIMAT0028292 | mml-miR-7176-5p | 8 | ......_ | 3 | 85 |
| MIMAT0025828 | gga-miR-6557-5p | 6 | ......_ | 1 | 85 |
| MIMAT0024877 | osa-miR6254 | 3 | ......_ | 8 | 85 |
| MIMAT0020499 | bfl-miR-4904-5p | 8 | ......_ | 3 | 85 |
| MIMAT0019032 | hsa-miR-4497 | 1 | ......_ | 6 | 85 |
| MIMAT0015935 | ppy-miR-510 | 3 | ......_ | 8 | 85 |
| MIMAT0014707 | hsv2-miR-H24 | 1 | ......_ | 6 | 85 |
| MIMAT0009829 | nve-miR-2051-3p | 8 | ......_ | 3 | 85 |
| MIMAT0005783 | pbi-miR-510 | 3 | ......_ | 8 | 85 |
| MIMAT0005766 | mml-miR-510-5p | 3 | ......_ | 8 | 85 |
| MIMAT0005757 | ssy-miR-510 | 3 | ......_ | 8 | 85 |
| MIMAT0005048 | ppt-miR166l | 6 | _...... | 1 | 85 |
| MIMAT0005048 | ppt-miR166l | 1 | _...... | 6 | 85 |
| MIMAT0005047 | ppt-miR166k | 6 | _...... | 1 | 85 |
| MIMAT0005047 | ppt-miR166k | 1 | _...... | 6 | 85 |
| MIMAT0005046 | ppt-miR166j | 6 | _...... | 1 | 85 |
| MIMAT0005046 | ppt-miR166j | 1 | _...... | 6 | 85 |
| MIMAT0019084 | rlcv-miR-rL1-1-3p | 1 | ......_ | 6 | 85 |
