| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | ctcctgcg | 8 | ||
| MIMAT0024062 | ptr-miR-3193 | 1 | ........ | 8 | 100 |
| MIMAT0005543 | mcmv-miR-M23-1-3p | 1 | ........ | 8 | 100 |
| MIMAT0035223 | dme-miR-9380-5p | 2 | ......._ | 8 | 87 |
| MIMAT0031534 | ppe-miR3627-5p | 8 | _....... | 2 | 87 |
| MIMAT0031245 | stu-miR3627-5p | 8 | _....... | 2 | 87 |
| MIMAT0026018 | mdm-miR3627c | 8 | _....... | 2 | 87 |
| MIMAT0026017 | mdm-miR3627b | 8 | _....... | 2 | 87 |
| MIMAT0026016 | mdm-miR3627a | 8 | _....... | 2 | 87 |
| MIMAT0027252 | pgi-miR4376 | 8 | ......._ | 2 | 87 |
| MIMAT0024404 | ppy-miR-1976 | 1 | ......._ | 7 | 87 |
| MIMAT0024018 | cgr-miR-6091 | 1 | _....... | 7 | 87 |
| MIMAT0023143 | mtr-miR5225c | 8 | _....... | 2 | 87 |
| MIMAT0023142 | mtr-miR5225b | 8 | _....... | 2 | 87 |
| MIMAT0022688 | sly-miR4376 | 8 | _....... | 2 | 87 |
| MIMAT0022354 | mmu-miR-3544-3p | 2 | ......._ | 8 | 87 |
| MIMAT0021243 | mtr-miR5247 | 7 | ......._ | 1 | 87 |
| MIMAT0021144 | mtr-miR5211 | 8 | _....... | 2 | 87 |
| MIMAT0019836 | hsa-miR-4722-5p | 8 | ......._ | 2 | 87 |
| MIMAT0018706 | tca-miR-308-5p | 7 | _....... | 1 | 87 |
| MIMAT0016280 | sja-miR-3480-5p | 7 | ......._ | 1 | 87 |
| MIMAT0015077 | hsa-miR-3193 | 1 | _....... | 7 | 87 |
| MIMAT0009451 | hsa-miR-1976 | 2 | ......._ | 8 | 87 |
| MIMAT0007669 | gga-miR-1762 | 8 | ......._ | 2 | 87 |
| MIMAT0007401 | hsa-miR-1539 | 1 | _....... | 7 | 87 |
| MIMAT0035950 | chi-miR-1343 | 1 | ......g. | 8 | 87 |
| MIMAT0034770 | efu-miR-9190 | 1 | ......t. | 8 | 87 |
| MIMAT0034357 | cfa-miR-1343 | 1 | ......g. | 8 | 87 |
| MIMAT0028011 | mmu-miR-7053-3p | 1 | ......t. | 8 | 87 |
| MIMAT0024257 | ggo-miR-1343 | 1 | ......g. | 8 | 87 |
| MIMAT0023761 | cgr-miR-1343 | 1 | ......g. | 8 | 87 |
| MIMAT0022340 | cin-miR-5606-3p | 1 | ......t. | 8 | 87 |
| MIMAT0020596 | ssc-miR-1343 | 1 | ......g. | 8 | 87 |
| MIMAT0019776 | hsa-miR-1343-3p | 1 | ......g. | 8 | 87 |
| MIMAT0016150 | ppy-miR-1200 | 1 | ......a. | 8 | 87 |
| MIMAT0014032 | zma-miR1432-5p | 8 | ......a. | 1 | 87 |
| MIMAT0011840 | bta-miR-1343-3p | 1 | ......g. | 8 | 87 |
| MIMAT0011390 | sbi-miR1432 | 8 | ......a. | 1 | 87 |
| MIMAT0019119 | tca-miR-190-3p | 8 | ......g. | 1 | 87 |
| MIMAT0007883 | hsa-miR-1909-3p | 8 | .c...... | 1 | 87 |
| MIMAT0005863 | hsa-miR-1200 | 1 | ......a. | 8 | 87 |
| MIMAT0037214 | ata-miR1432-5p | 7 | ......__ | 2 | 75 |
| MIMAT0036294 | chi-miR-873-5p | 7 | _......_ | 2 | 75 |
| MIMAT0036193 | chi-miR-378-5p | 1 | ......__ | 6 | 75 |
| MIMAT0035842 | bra-miR391-5p | 8 | __...... | 3 | 75 |
| MIMAT0035530 | bdi-miR1432 | 8 | ......__ | 3 | 75 |
| MIMAT0035178 | efu-miR-1343 | 2 | ......__ | 7 | 75 |
| MIMAT0034778 | efu-miR-9203b | 7 | ......__ | 2 | 75 |
| MIMAT0034621 | eca-miR-9076 | 2 | ......__ | 7 | 75 |
| MIMAT0034601 | eca-miR-9057 | 6 | ......__ | 1 | 75 |
| MIMAT0034391 | cfa-miR-8887 | 1 | _......_ | 6 | 75 |
| MIMAT0033955 | esi-miR8620 | 1 | _......_ | 6 | 75 |
| MIMAT0033891 | atr-miR8602 | 7 | ......__ | 2 | 75 |
| MIMAT0033802 | pxy-miR-8510a-8-3p | 7 | __...... | 2 | 75 |
| MIMAT0033735 | pxy-miR-8510b-3p | 7 | __...... | 2 | 75 |
| MIMAT0033733 | pxy-miR-8510a-3p | 7 | __...... | 2 | 75 |
| MIMAT0031658 | bbe-miR-252b-3p | 2 | __...... | 7 | 75 |
| MIMAT0031419 | mmu-miR-8113 | 6 | ......__ | 1 | 75 |
| MIMAT0031407 | mmu-miR-8103 | 2 | ......__ | 7 | 75 |
| MIMAT0031274 | stu-miR4376-5p | 8 | __...... | 3 | 75 |
| MIMAT0030414 | hsa-miR-4433b-3p | 6 | ......__ | 1 | 75 |
| MIMAT0030201 | bdi-miR7733-3p | 1 | __...... | 6 | 75 |
| MIMAT0029564 | ipu-miR-7565 | 2 | _......_ | 7 | 75 |
| MIMAT0028817 | mdo-miR-7380-3p | 6 | ......__ | 1 | 75 |
| MIMAT0028664 | mdo-miR-873-5p | 7 | _......_ | 2 | 75 |
| MIMAT0028575 | mdo-miR-7295-3p | 2 | __...... | 7 | 75 |
| MIMAT0028498 | mdo-miR-7265-5p | 6 | ......__ | 1 | 75 |
| MIMAT0026379 | bma-miR-5879b | 6 | _......_ | 1 | 75 |
| MIMAT0026019 | mdm-miR391 | 8 | __...... | 3 | 75 |
| MIMAT0028018 | mmu-miR-7057-5p | 6 | ......__ | 1 | 75 |
| MIMAT0028004 | mmu-miR-7050-5p | 7 | ......__ | 2 | 75 |
| MIMAT0027732 | mmu-miR-6916-5p | 6 | ......__ | 1 | 75 |
| MIMAT0027702 | mmu-miR-6901-5p | 7 | _......_ | 2 | 75 |
| MIMAT0027672 | hsa-miR-6886-5p | 8 | __...... | 3 | 75 |
| MIMAT0027574 | hsa-miR-6836-5p | 6 | __...... | 1 | 75 |
| MIMAT0027395 | hsa-miR-6747-3p | 1 | _......_ | 6 | 75 |
| MIMAT0027356 | hsa-miR-6727-3p | 1 | _......_ | 6 | 75 |
| MIMAT0025142 | mmu-miR-6392-3p | 8 | __...... | 3 | 75 |
| MIMAT0025114 | mmu-miR-6370 | 6 | _......_ | 1 | 75 |
| MIMAT0025073 | rno-miR-6332 | 6 | __...... | 1 | 75 |
| MIMAT0024782 | hsa-miR-6165 | 8 | _......_ | 3 | 75 |
| MIMAT0024394 | ppy-miR-151b | 8 | ......__ | 3 | 75 |
| MIMAT0024311 | mml-miR-873-5p | 6 | _......_ | 1 | 75 |
| MIMAT0024291 | ggo-miR-1286 | 7 | _......_ | 2 | 75 |
| MIMAT0024167 | ggo-miR-873 | 6 | _......_ | 1 | 75 |
| MIMAT0024063 | ptr-miR-3664 | 7 | ......__ | 2 | 75 |
| MIMAT0023943 | cgr-miR-378-5p | 1 | ......__ | 6 | 75 |
| MIMAT0023693 | hsa-miR-6068 | 1 | __...... | 6 | 75 |
| MIMAT0023258 | osa-miR5791 | 8 | _......_ | 3 | 75 |
| MIMAT0023077 | tur-miR-252-3p | 1 | _......_ | 6 | 75 |
| MIMAT0022390 | ath-miR5631 | 8 | _......_ | 3 | 75 |
| MIMAT0022062 | aca-miR-5440 | 7 | ......__ | 2 | 75 |
| MIMAT0020726 | bdi-miR398b | 6 | ......__ | 1 | 75 |
| MIMAT0020058 | sko-miR-4838 | 3 | ......__ | 8 | 75 |
| MIMAT0019921 | hsa-miR-4768-3p | 7 | ......__ | 2 | 75 |
| MIMAT0019788 | hsa-miR-4695-5p | 6 | ......__ | 1 | 75 |
| MIMAT0019235 | hsa-miR-4520-5p | 1 | __...... | 6 | 75 |
| MIMAT0018981 | hsa-miR-4459 | 7 | ......__ | 2 | 75 |
| MIMAT0018952 | hsa-miR-4436a | 6 | _......_ | 1 | 75 |
| MIMAT0018949 | hsa-miR-4433a-3p | 7 | ......__ | 2 | 75 |
| MIMAT0018280 | gma-miR4376-5p | 8 | __...... | 3 | 75 |
| MIMAT0018545 | ame-miR-3770 | 3 | _......_ | 8 | 75 |
| MIMAT0032110 | hsa-miR-3653-5p | 2 | ......__ | 7 | 75 |
| MIMAT0017798 | rno-miR-3544 | 3 | ......__ | 8 | 75 |
| MIMAT0017797 | rno-miR-3543 | 6 | ......__ | 1 | 75 |
| MIMAT0016209 | ppy-miR-1286 | 7 | _......_ | 2 | 75 |
| MIMAT0016111 | ppy-miR-873 | 6 | _......_ | 1 | 75 |
| MIMAT0017537 | aly-miR391-5p | 8 | __...... | 3 | 75 |
| MIMAT0015590 | bmo-miR-3389-3p | 2 | __...... | 7 | 75 |
| MIMAT0019208 | hsa-miR-3074-5p | 3 | _......_ | 8 | 75 |
| MIMAT0014856 | mmu-miR-3074-5p | 3 | _......_ | 8 | 75 |
| MIMAT0014694 | hsv1-miR-H16 | 7 | ......__ | 2 | 75 |
| MIMAT0014604 | tgu-miR-2997-3p | 6 | ......__ | 1 | 75 |
| MIMAT0014452 | tgu-miR-1677-5p | 1 | _......_ | 6 | 75 |
| MIMAT0013120 | eca-miR-873 | 6 | _......_ | 1 | 75 |
| MIMAT0012844 | rno-miR-665 | 8 | ......__ | 3 | 75 |
| MIMAT0012786 | mml-miR-665 | 8 | ......__ | 3 | 75 |
| MIMAT0012730 | iltv-miR-I6-5p | 3 | ......__ | 8 | 75 |
| MIMAT0012710 | hvt-miR-H1 | 7 | __...... | 2 | 75 |
| MIMAT0013630 | bmo-miR-2758-3p | 2 | __...... | 7 | 75 |
| MIMAT0012466 | dsi-miR-252-3p | 1 | _......_ | 6 | 75 |
| MIMAT0012262 | dps-miR-252-3p | 1 | _......_ | 6 | 75 |
| MIMAT0011754 | osa-miR2118o | 1 | ......__ | 6 | 75 |
| MIMAT0011469 | cbr-miR-35d-5p | 6 | __...... | 1 | 75 |
| MIMAT0011205 | gga-miR-2129 | 8 | _......_ | 3 | 75 |
| MIMAT0009934 | cfa-miR-665 | 8 | ......__ | 3 | 75 |
| MIMAT0019151 | bfl-miR-252b-3p | 2 | __...... | 7 | 75 |
| MIMAT0009377 | bta-miR-873 | 6 | _......_ | 1 | 75 |
| MIMAT0015279 | hsv1-miR-H3-5p | 1 | ......__ | 6 | 75 |
| MIMAT0008324 | ptr-miR-873 | 6 | _......_ | 1 | 75 |
| MIMAT0008312 | ptr-miR-665 | 8 | ......__ | 3 | 75 |
| MIMAT0008005 | ptr-miR-1286 | 7 | _......_ | 2 | 75 |
| MIMAT0006537 | mml-miR-936 | 7 | ......__ | 2 | 75 |
| MIMAT0026907 | mml-miR-660-3p | 3 | ......__ | 8 | 75 |
| MIMAT0007724 | gga-miR-1806 | 8 | _......_ | 3 | 75 |
| MIMAT0007562 | gga-miR-1677-5p | 1 | _......_ | 6 | 75 |
| MIMAT0007532 | gga-miR-1653 | 6 | ......__ | 1 | 75 |
| MIMAT0007526 | gga-miR-1649-5p | 1 | _......_ | 6 | 75 |
| MIMAT0007435 | gga-miR-1574-3p | 7 | ......__ | 2 | 75 |
| MIMAT0005966 | osa-miR1432-5p | 8 | ......__ | 3 | 75 |
| MIMAT0007272 | oan-miR-873-5p | 7 | _......_ | 2 | 75 |
| MIMAT0007162 | oan-miR-1386 | 1 | ......__ | 6 | 75 |
| MIMAT0005877 | hsa-miR-1286 | 7 | _......_ | 2 | 75 |
| MIMAT0005359 | tae-miR1124 | 6 | _......_ | 1 | 75 |
| MIMAT0005339 | rno-miR-873-5p | 6 | _......_ | 1 | 75 |
| MIMAT0020896 | dme-miR-252-3p | 1 | _......_ | 6 | 75 |
| MIMAT0004953 | hsa-miR-873-5p | 6 | _......_ | 1 | 75 |
| MIMAT0004952 | hsa-miR-665 | 8 | ......__ | 3 | 75 |
| MIMAT0004936 | mmu-miR-873a-5p | 6 | _......_ | 1 | 75 |
| MIMAT0003911 | ppt-miR1219d | 3 | _......_ | 8 | 75 |
| MIMAT0003910 | ppt-miR1219c | 3 | _......_ | 8 | 75 |
| MIMAT0003909 | ppt-miR1219b | 3 | _......_ | 8 | 75 |
| MIMAT0003908 | ppt-miR1219a | 3 | _......_ | 8 | 75 |
| MIMAT0003467 | mmu-miR-688 | 7 | __...... | 2 | 75 |
| MIMAT0003733 | mmu-miR-665-3p | 8 | ......__ | 3 | 75 |
| MIMAT0003378 | rno-miR-378a-5p | 1 | ......__ | 6 | 75 |
| MIMAT0022711 | hsa-miR-660-3p | 3 | ......__ | 8 | 75 |
| MIMAT0000933 | ath-miR391-5p | 8 | __...... | 3 | 75 |
| MIMAT0000742 | mmu-miR-378a-5p | 1 | ......__ | 6 | 75 |
| MIMAT0000731 | hsa-miR-378a-5p | 1 | ......__ | 6 | 75 |
