| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | ctcgtct | 7 | ||
| MIMAT0036137 | chi-miR-326-5p | 2 | ....... | 8 | 100 |
| MIMAT0035508 | bdi-miR9499 | 3 | ......_ | 8 | 85 |
| MIMAT0035389 | nve-miR-9429-3p | 2 | _...... | 7 | 85 |
| MIMAT0034642 | eca-miR-9096 | 1 | _...... | 6 | 85 |
| MIMAT0034058 | gra-miR8685 | 6 | _...... | 1 | 85 |
| MIMAT0034040 | gra-miR8669 | 8 | _...... | 3 | 85 |
| MIMAT0033255 | ppc-miR-8351-3p | 8 | _...... | 3 | 85 |
| MIMAT0028476 | mdo-miR-7255-5p | 8 | ......_ | 3 | 85 |
| MIMAT0024831 | hvu-miR6203 | 6 | _...... | 1 | 85 |
| MIMAT0024822 | hvu-miR6196 | 8 | ......_ | 3 | 85 |
| MIMAT0027253 | pgi-miR6136a.1 | 7 | _...... | 2 | 85 |
| MIMAT0023679 | ame-miR-6055 | 7 | _...... | 2 | 85 |
| MIMAT0023669 | ame-miR-6046 | 8 | ......_ | 3 | 85 |
| MIMAT0023292 | osa-miR5819 | 8 | ......_ | 3 | 85 |
| MIMAT0023268 | osa-miR5799 | 7 | _...... | 2 | 85 |
| MIMAT0023257 | osa-miR5790 | 7 | _...... | 2 | 85 |
| MIMAT0016746 | cin-miR-4144-5p | 2 | _...... | 7 | 85 |
| MIMAT0016569 | cin-miR-4040-5p | 1 | _...... | 6 | 85 |
| MIMAT0017593 | aly-miR774a-5p.1 | 8 | _...... | 3 | 85 |
| MIMAT0013586 | cte-miR-2717 | 6 | _...... | 1 | 85 |
| MIMAT0010004 | bfl-miR-2075 | 3 | ......_ | 8 | 85 |
| MIMAT0009809 | nve-miR-2040b-3p | 2 | _...... | 7 | 85 |
| MIMAT0009413 | mmu-miR-1947-5p | 8 | ......_ | 3 | 85 |
| MIMAT0017301 | rno-miR-375-5p | 8 | ......_ | 3 | 85 |
| MIMAT0017078 | mmu-miR-375-5p | 8 | ......_ | 3 | 85 |
