| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | ctctcacc | 8 | ||
| MIMAT0005584 | hsa-miR-1229-3p | 1 | ........ | 8 | 100 |
| MIMAT0037045 | ssc-miR-9827-5p | 7 | _....... | 1 | 87 |
| MIMAT0029004 | oan-miR-7427-5p | 8 | _....... | 2 | 87 |
| MIMAT0027788 | mmu-miR-6944-5p | 7 | ......._ | 1 | 87 |
| MIMAT0027469 | hsa-miR-6784-3p | 1 | _....... | 7 | 87 |
| MIMAT0025304 | prv-miR-LLT1 | 1 | _....... | 7 | 87 |
| MIMAT0031165 | ppe-miR482a-5p | 8 | _....... | 2 | 87 |
| MIMAT0022311 | cel-miR-356b-5p | 8 | _....... | 2 | 87 |
| MIMAT0009794 | nve-miR-2036-5p | 8 | _....... | 2 | 87 |
| MIMAT0009460 | mmu-miR-1982-3p | 1 | _....... | 7 | 87 |
| MIMAT0029952 | bta-miR-7691 | 8 | ......g. | 1 | 87 |
| MIMAT0014623 | tgu-miR-2954-5p | 8 | ......g. | 1 | 87 |
| MIMAT0037239 | ata-miR156e-3p | 2 | __...... | 7 | 75 |
| MIMAT0037123 | ata-miR156a-3p | 2 | __...... | 7 | 75 |
| MIMAT0036487 | tch-miR-342-3p | 1 | _......_ | 6 | 75 |
| MIMAT0036158 | chi-miR-342-3p | 1 | _......_ | 6 | 75 |
| MIMAT0035856 | bra-miR400-5p | 8 | ......__ | 3 | 75 |
| MIMAT0035825 | bra-miR156e-3p | 3 | __...... | 8 | 75 |
| MIMAT0035552 | dvi-miR-1003-3p | 1 | _......_ | 6 | 75 |
| MIMAT0035262 | gsa-miR-67-5p | 1 | _......_ | 6 | 75 |
| MIMAT0034966 | efu-miR-342 | 1 | _......_ | 6 | 75 |
| MIMAT0034664 | eca-miR-9115 | 8 | _......_ | 3 | 75 |
| MIMAT0034479 | eca-miR-8950 | 6 | ......__ | 1 | 75 |
| MIMAT0034470 | eca-miR-8941 | 8 | ......__ | 3 | 75 |
| MIMAT0034213 | gra-miR8775 | 8 | _......_ | 3 | 75 |
| MIMAT0033865 | atr-miR8581 | 6 | ......__ | 1 | 75 |
| MIMAT0033197 | ppc-miR-8326-3p | 3 | _......_ | 8 | 75 |
| MIMAT0032983 | ppc-miR-8257-3p | 2 | __...... | 7 | 75 |
| MIMAT0032922 | ppc-miR-8234-5p | 7 | _......_ | 2 | 75 |
| MIMAT0032858 | ppc-miR-8214-5p | 6 | _......_ | 1 | 75 |
| MIMAT0032309 | ssa-miR-125b-2-3p | 8 | __...... | 3 | 75 |
| MIMAT0031694 | bbe-miR-4868c-3p | 8 | __...... | 3 | 75 |
| MIMAT0030825 | prd-miR-7962-3p | 2 | _......_ | 7 | 75 |
| MIMAT0030666 | prd-miR-7916-5p | 6 | __...... | 1 | 75 |
| MIMAT0030536 | prd-miR-7940c-5p | 7 | _......_ | 2 | 75 |
| MIMAT0030430 | hsa-miR-7855-5p | 8 | __...... | 3 | 75 |
| MIMAT0030080 | bdi-miR156i-3p | 2 | __...... | 7 | 75 |
| MIMAT0030076 | bdi-miR156g-3p | 2 | __...... | 7 | 75 |
| MIMAT0030005 | mtr-miR399t-5p | 7 | __...... | 2 | 75 |
| MIMAT0030003 | mtr-miR399s-5p | 7 | __...... | 2 | 75 |
| MIMAT0029090 | gga-miR-7468-5p | 1 | _......_ | 6 | 75 |
| MIMAT0028931 | mdo-miR-7398g-3p | 3 | _......_ | 8 | 75 |
| MIMAT0028660 | mdo-miR-7329-5p | 6 | __...... | 1 | 75 |
| MIMAT0028408 | mmu-miR-7220-5p | 6 | __...... | 1 | 75 |
| MIMAT0028341 | mml-miR-7191-3p | 2 | ......__ | 7 | 75 |
| MIMAT0026454 | sbi-miR6235-5p | 8 | _......_ | 3 | 75 |
| MIMAT0026434 | sbi-miR6229-5p | 3 | _......_ | 8 | 75 |
| MIMAT0028101 | ddi-miR-7098 | 1 | ......__ | 6 | 75 |
| MIMAT0028030 | mmu-miR-7063-5p | 7 | ......__ | 2 | 75 |
| MIMAT0028017 | mmu-miR-7056-3p | 2 | __...... | 7 | 75 |
| MIMAT0027966 | mmu-miR-7031-5p | 8 | ......__ | 3 | 75 |
| MIMAT0027935 | mmu-miR-7015-3p | 1 | _......_ | 6 | 75 |
| MIMAT0027887 | mmu-miR-6992-3p | 1 | _......_ | 6 | 75 |
| MIMAT0027629 | hsa-miR-6864-3p | 6 | _......_ | 1 | 75 |
| MIMAT0027626 | hsa-miR-6862-3p | 2 | __...... | 7 | 75 |
| MIMAT0027422 | hsa-miR-6761-5p | 8 | ......__ | 3 | 75 |
| MIMAT0025848 | hsa-miR-6511b-3p | 2 | __...... | 7 | 75 |
| MIMAT0025650 | gga-miR-6571-3p | 6 | ......__ | 1 | 75 |
| MIMAT0025479 | hsa-miR-6511a-3p | 2 | __...... | 7 | 75 |
| MIMAT0025018 | hme-miR-6311-3p | 8 | _......_ | 3 | 75 |
| MIMAT0025011 | hme-miR-6305-3p | 7 | _......_ | 2 | 75 |
| MIMAT0024985 | hme-miR-71 | 1 | _......_ | 6 | 75 |
| MIMAT0024101 | ggo-miR-342 | 1 | _......_ | 6 | 75 |
| MIMAT0023923 | cgr-miR-342-3p | 1 | _......_ | 6 | 75 |
| MIMAT0023177 | gma-miR4416b | 8 | __...... | 3 | 75 |
| MIMAT0023041 | tur-miR-71-3p | 1 | _......_ | 6 | 75 |
| MIMAT0022401 | ath-miR5640 | 6 | ......__ | 1 | 75 |
| MIMAT0021962 | aca-miR-454-5p | 6 | _......_ | 1 | 75 |
| MIMAT0021674 | gma-miR1513c | 8 | ......__ | 3 | 75 |
| MIMAT0021248 | mtr-miR5252 | 6 | ......__ | 1 | 75 |
| MIMAT0020535 | ath-miR5029 | 8 | ......__ | 3 | 75 |
| MIMAT0021008 | gma-miR1513b | 6 | ......__ | 1 | 75 |
| MIMAT0020508 | dme-miR-4915-5p | 6 | _......_ | 1 | 75 |
| MIMAT0020106 | bfl-miR-4868c-5p | 8 | __...... | 3 | 75 |
| MIMAT0020026 | sko-miR-4822-3p | 1 | _......_ | 6 | 75 |
| MIMAT0019964 | hsa-miR-4792 | 7 | __...... | 2 | 75 |
| MIMAT0019819 | hsa-miR-4712-3p | 8 | ......__ | 3 | 75 |
| MIMAT0019815 | hsa-miR-4710 | 7 | __...... | 2 | 75 |
| MIMAT0019785 | hsa-miR-4693-3p | 6 | ......__ | 1 | 75 |
| MIMAT0018512 | ame-miR-3717 | 6 | ......__ | 1 | 75 |
| MIMAT0016867 | hsa-miR-4316 | 6 | __...... | 1 | 75 |
| MIMAT0016348 | ahy-miR3521 | 7 | __...... | 2 | 75 |
| MIMAT0016272 | sja-miR-2162-5p | 7 | _......_ | 2 | 75 |
| MIMAT0015845 | ppy-miR-342-3p | 1 | _......_ | 6 | 75 |
| MIMAT0017583 | aly-miR400-5p | 8 | ......__ | 3 | 75 |
| MIMAT0017400 | aly-miR156b-3p | 2 | __...... | 7 | 75 |
| MIMAT0015449 | bmo-miR-3265 | 8 | ......__ | 3 | 75 |
| MIMAT0015399 | bmo-miR-3219 | 6 | _......_ | 1 | 75 |
| MIMAT0014678 | hma-miR-3010 | 6 | ......__ | 1 | 75 |
| MIMAT0014401 | cqu-miR-71-3p | 1 | _......_ | 6 | 75 |
| MIMAT0014225 | aae-miR-2a-5p | 2 | ......__ | 7 | 75 |
| MIMAT0014221 | aae-miR-71-3p | 1 | _......_ | 6 | 75 |
| MIMAT0014140 | ath-miR2936 | 8 | ......__ | 3 | 75 |
| MIMAT0013944 | ssc-miR-342 | 1 | _......_ | 6 | 75 |
| MIMAT0013137 | eca-miR-342-3p | 1 | _......_ | 6 | 75 |
| MIMAT0012623 | bmo-miR-2744 | 8 | ......__ | 3 | 75 |
| MIMAT0012428 | dsi-miR-1003-3p | 1 | _......_ | 6 | 75 |
| MIMAT0012403 | dps-miR-2567b-3p | 1 | _......_ | 6 | 75 |
| MIMAT0012325 | dps-miR-2535-3p | 1 | _......_ | 6 | 75 |
| MIMAT0011967 | bta-miR-2409 | 1 | _......_ | 6 | 75 |
| MIMAT0010064 | osa-miR2100-5p | 3 | ......__ | 8 | 75 |
| MIMAT0009455 | mmu-miR-1983 | 1 | __...... | 6 | 75 |
| MIMAT0032043 | dvi-miR-2a-5p | 1 | ......__ | 6 | 75 |
| MIMAT0019109 | tca-miR-71-3p | 1 | _......_ | 6 | 75 |
| MIMAT0008110 | ptr-miR-342 | 1 | _......_ | 6 | 75 |
| MIMAT0007858 | aga-miR-87 | 6 | __...... | 1 | 75 |
| MIMAT0007853 | ath-miR1886.1 | 6 | ......__ | 1 | 75 |
| MIMAT0006709 | cfa-miR-342 | 1 | _......_ | 6 | 75 |
| MIMAT0006283 | mml-miR-342-3p | 1 | _......_ | 6 | 75 |
| MIMAT0007703 | gga-miR-1790 | 8 | __...... | 3 | 75 |
| MIMAT0007589 | gga-miR-1697 | 1 | ......__ | 6 | 75 |
| MIMAT0007517 | gga-miR-1642 | 6 | ......__ | 1 | 75 |
| MIMAT0007371 | gma-miR1513a-5p | 6 | ......__ | 1 | 75 |
| MIMAT0005964 | osa-miR1430 | 7 | __...... | 2 | 75 |
| MIMAT0007232 | oan-miR-1412 | 8 | __...... | 3 | 75 |
| MIMAT0007059 | oan-miR-181c-3p | 1 | __...... | 6 | 75 |
| MIMAT0007034 | oan-miR-1369 | 8 | __...... | 3 | 75 |
| MIMAT0022720 | hsa-miR-1304-3p | 1 | _......_ | 6 | 75 |
| MIMAT0022719 | hsa-miR-1285-5p | 3 | _......_ | 8 | 75 |
| MIMAT0005862 | mml-miR-1241 | 1 | __...... | 6 | 75 |
| MIMAT0005522 | cel-miR-1021 | 8 | _......_ | 3 | 75 |
| MIMAT0005017 | dme-miR-1004-3p | 1 | _......_ | 6 | 75 |
| MIMAT0005016 | dme-miR-1003-3p | 1 | _......_ | 6 | 75 |
| MIMAT0004310 | ath-miR863-3p | 7 | ......__ | 2 | 75 |
| MIMAT0015243 | bmo-miR-71-3p | 2 | _......_ | 7 | 75 |
| MIMAT0004236 | mmu-miR-741-3p | 6 | ......__ | 1 | 75 |
| MIMAT0020351 | cel-miR-792-5p | 6 | ......__ | 1 | 75 |
| MIMAT0012126 | sme-miR-755-3p | 6 | _......_ | 1 | 75 |
| MIMAT0003846 | bta-miR-342 | 1 | _......_ | 6 | 75 |
| MIMAT0001741 | zma-miR171g-3p | 8 | __...... | 3 | 75 |
| MIMAT0001566 | mghv-miR-M1-3-3p | 8 | __...... | 3 | 75 |
| MIMAT0001463 | sbi-miR171c | 8 | __...... | 3 | 75 |
| MIMAT0015127 | zma-miR156b-3p | 2 | __...... | 7 | 75 |
| MIMAT0001068 | osa-miR171g | 8 | __...... | 3 | 75 |
| MIMAT0001001 | ath-miR400 | 8 | ......__ | 3 | 75 |
| MIMAT0000753 | hsa-miR-342-3p | 1 | _......_ | 6 | 75 |
| MIMAT0000590 | mmu-miR-342-3p | 1 | _......_ | 6 | 75 |
| MIMAT0000589 | rno-miR-342-3p | 1 | _......_ | 6 | 75 |
| MIMAT0031866 | ath-miR156b-3p | 3 | __...... | 8 | 75 |
| MIMAT0020780 | dme-miR-2a-1-5p | 1 | ......__ | 6 | 75 |
