| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | ctctctg | 7 | ||
| MIMAT0028654 | mdo-miR-7326-5p | 8 | ....... | 2 | 100 |
| MIMAT0027535 | hsa-miR-6817-3p | 2 | ....... | 8 | 100 |
| MIMAT0015404 | bmo-miR-3223-3p | 1 | ....... | 7 | 100 |
| MIMAT0022732 | hsa-miR-3191-5p | 1 | ....... | 7 | 100 |
| MIMAT0011304 | dre-miR-2196 | 2 | ....... | 8 | 100 |
| MIMAT0007873 | mmu-miR-1896 | 1 | ....... | 7 | 100 |
| MIMAT0006016 | hiv1-miR-TAR-5p | 2 | ....... | 8 | 100 |
| MIMAT0004845 | mmu-miR-881-5p | 7 | ....... | 1 | 100 |
| MIMAT0004303 | ath-miR859 | 2 | ....... | 8 | 100 |
| MIMAT0036421 | ggo-miR-518c-5p | 1 | _...... | 6 | 85 |
| MIMAT0036363 | gma-miR9743 | 6 | ......_ | 1 | 85 |
| MIMAT0036143 | chi-miR-330-5p | 1 | _...... | 6 | 85 |
| MIMAT0034812 | efu-miR-9220 | 1 | _...... | 6 | 85 |
| MIMAT0034805 | efu-miR-9214 | 2 | _...... | 7 | 85 |
| MIMAT0034599 | eca-miR-9055 | 6 | ......_ | 1 | 85 |
| MIMAT0034042 | gra-miR1446 | 3 | ......_ | 8 | 85 |
| MIMAT0033271 | ppc-miR-8364s-3p | 6 | ......_ | 1 | 85 |
| MIMAT0033265 | ppc-miR-8364l-3p | 6 | ......_ | 1 | 85 |
| MIMAT0033261 | ppc-miR-8364e-3p | 6 | ......_ | 1 | 85 |
| MIMAT0033217 | ppc-miR-8364i-3p | 6 | ......_ | 1 | 85 |
| MIMAT0033177 | ppc-miR-8364a-3p | 6 | ......_ | 1 | 85 |
| MIMAT0033160 | ppc-miR-8364p-3p | 8 | ......_ | 3 | 85 |
| MIMAT0033139 | ppc-miR-8364o-3p | 8 | ......_ | 3 | 85 |
| MIMAT0033120 | ppc-miR-8364g-3p | 6 | ......_ | 1 | 85 |
| MIMAT0033082 | ppc-miR-8364b-3p | 6 | ......_ | 1 | 85 |
| MIMAT0033064 | ppc-miR-8364h-3p | 6 | ......_ | 1 | 85 |
| MIMAT0032964 | ppc-miR-8250a-5p | 1 | ......_ | 6 | 85 |
| MIMAT0032762 | ath-miR8166 | 6 | ......_ | 1 | 85 |
| MIMAT0028961 | oan-miR-7407-3p | 3 | _...... | 8 | 85 |
| MIMAT0028377 | mml-miR-7205-3p | 1 | _...... | 6 | 85 |
| MIMAT0028145 | ssc-miR-7135-5p | 1 | _...... | 6 | 85 |
| MIMAT0028031 | mmu-miR-7063-3p | 3 | ......_ | 8 | 85 |
| MIMAT0027947 | mmu-miR-7021-3p | 1 | _...... | 6 | 85 |
| MIMAT0027909 | mmu-miR-6973b-3p | 3 | ......_ | 8 | 85 |
| MIMAT0027805 | mmu-miR-6952-3p | 1 | _...... | 6 | 85 |
| MIMAT0027647 | hsa-miR-6873-3p | 3 | ......_ | 8 | 85 |
| MIMAT0027621 | hsa-miR-6769b-3p | 3 | ......_ | 8 | 85 |
| MIMAT0027549 | hsa-miR-6824-3p | 1 | _...... | 6 | 85 |
| MIMAT0027429 | hsa-miR-6764-3p | 1 | _...... | 6 | 85 |
| MIMAT0027358 | hsa-miR-6728-3p | 1 | _...... | 6 | 85 |
| MIMAT0025778 | gga-miR-6675-3p | 1 | _...... | 6 | 85 |
| MIMAT0025671 | gga-miR-6582-5p | 8 | ......_ | 3 | 85 |
| MIMAT0020203 | dme-miR-4974-5p | 6 | ......_ | 1 | 85 |
| MIMAT0020186 | dme-miR-4963-3p | 3 | _...... | 8 | 85 |
| MIMAT0019900 | hsa-miR-4756-3p | 7 | _...... | 2 | 85 |
| MIMAT0019839 | hsa-miR-4723-3p | 3 | ......_ | 8 | 85 |
| MIMAT0019769 | hsa-miR-4684-5p | 1 | ......_ | 6 | 85 |
| MIMAT0019718 | hsa-miR-4653-5p | 1 | _...... | 6 | 85 |
| MIMAT0019592 | pma-miR-4560 | 1 | _...... | 6 | 85 |
| MIMAT0018228 | gma-miR4340 | 8 | _...... | 3 | 85 |
| MIMAT0018196 | hsa-miR-3921 | 1 | _...... | 6 | 85 |
| MIMAT0018193 | hsa-miR-3919 | 7 | _...... | 2 | 85 |
| MIMAT0018701 | tca-miR-3834-3p | 1 | _...... | 6 | 85 |
| MIMAT0016292 | sja-miR-3486-5p | 1 | _...... | 6 | 85 |
| MIMAT0016036 | ppy-miR-593 | 3 | _...... | 8 | 85 |
| MIMAT0015833 | ppy-miR-330-5p | 1 | _...... | 6 | 85 |
| MIMAT0015422 | bmo-miR-3239 | 7 | _...... | 2 | 85 |
| MIMAT0015063 | hsa-miR-3183 | 3 | ......_ | 8 | 85 |
| MIMAT0014985 | hsa-miR-3123 | 6 | _...... | 1 | 85 |
| MIMAT0013012 | eca-miR-330 | 1 | _...... | 6 | 85 |
| MIMAT0013470 | mtr-miR2663 | 8 | ......_ | 3 | 85 |
| MIMAT0011970 | bta-miR-1584-3p | 1 | ......_ | 6 | 85 |
| MIMAT0011902 | bta-miR-2364 | 1 | _...... | 6 | 85 |
| MIMAT0009893 | cfa-miR-330 | 1 | _...... | 6 | 85 |
| MIMAT0008403 | hsv1-miR-H5-3p | 8 | _...... | 3 | 85 |
| MIMAT0008264 | ptr-miR-593 | 3 | _...... | 8 | 85 |
| MIMAT0006542 | mml-miR-942-5p | 3 | _...... | 8 | 85 |
| MIMAT0006453 | mml-miR-593 | 3 | _...... | 8 | 85 |
| MIMAT0006270 | mml-miR-330-5p | 1 | _...... | 6 | 85 |
| MIMAT0007712 | gga-miR-1756b | 2 | _...... | 7 | 85 |
| MIMAT0007579 | gga-miR-1689-5p | 1 | _...... | 6 | 85 |
| MIMAT0007523 | gga-miR-1647 | 1 | _...... | 6 | 85 |
| MIMAT0006017 | hiv1-miR-TAR-3p | 1 | _...... | 6 | 85 |
| MIMAT0005031 | cel-miR-1018 | 6 | ......_ | 1 | 85 |
| MIMAT0004802 | hsa-miR-593-3p | 3 | _...... | 8 | 85 |
| MIMAT0002847 | hsa-miR-518c-5p | 1 | _...... | 6 | 85 |
| MIMAT0015175 | zma-miR156j-3p | 3 | ......_ | 8 | 85 |
| MIMAT0004693 | hsa-miR-330-5p | 1 | _...... | 6 | 85 |
| MIMAT0004642 | mmu-miR-330-5p | 1 | _...... | 6 | 85 |
| MIMAT0004641 | rno-miR-330-5p | 1 | _...... | 6 | 85 |
| MIMAT0000344 | dme-miR-281-1-5p | 8 | ......_ | 3 | 85 |
