Result for your query miRNA sequence
>hsv1-miR-h2
cugagcc

RED =100 % Complementary sequence
.=Identical residue
blue alphabets=mismatch
_=Gap


Acc numbermiRNAStartAlignmentEnd% Identity
Query1ctgagcc7
MIMAT0036859oha-miR-24-3p8.......2100
MIMAT0036091chi-miR-24-3p8.......2100
MIMAT0035197efu-miR-2227.......1100
MIMAT0034575eca-miR-90332.......8100
MIMAT0032559ssa-miR-24b-3p8.......2100
MIMAT0032555ssa-miR-24a-3p8.......2100
MIMAT0029534ipu-miR-24b8.......2100
MIMAT0029483ipu-miR-248.......2100
MIMAT0026279ccr-miR-248.......2100
MIMAT0027975mmu-miR-7035-3p2.......8100
MIMAT0027403hsa-miR-6751-3p2.......8100
MIMAT0025166mmu-miR-64138.......2100
MIMAT0025163mmu-miR-64108.......2100
MIMAT0025136mmu-miR-5124b8.......2100
MIMAT0025113mmu-miR-63698.......2100
MIMAT0025104mmu-miR-63618.......2100
MIMAT0023867cgr-miR-24-3p8.......2100
MIMAT0031127ptr-miR-1199-5p2.......8100
MIMAT0031123cfa-miR-1199-5p2.......8100
MIMAT0031121ppy-miR-1199-5p2.......8100
MIMAT0031119hsa-miR-1199-5p2.......8100
MIMAT0022787sha-miR-248.......2100
MIMAT0022645ola-miR-24b-3p8.......2100
MIMAT0022585ola-miR-24c8.......2100
MIMAT0022545ola-miR-24a8.......2100
MIMAT0021900aca-miR-24-3p8.......2100
MIMAT0019405pma-miR-248.......2100
MIMAT0014539tgu-miR-24-3p8.......2100
MIMAT0012987eca-miR-248.......2100
MIMAT0010205hsv2-miR-H22.......8100
MIMAT0008399hsv1-miR-H2-3p2.......8100
MIMAT0011146xla-miR-24b8.......2100
MIMAT0006614cfa-miR-248.......2100
MIMAT0006955oan-miR-24-3p8.......2100
MIMAT0005575mml-miR-1225-3p1.......7100
MIMAT0004175mdo-miR-24-3p8.......2100
MIMAT0003840bta-miR-24-3p8.......2100
MIMAT0003655xtr-miR-24b8.......2100
MIMAT0003654xtr-miR-24a-3p8.......2100
MIMAT0003066tni-miR-248.......2100
MIMAT0003065fru-miR-24-3p8.......2100
MIMAT0002751ptr-miR-248.......2100
MIMAT0002740ggo-miR-248.......2100
MIMAT0002343ppa-miR-24-3p8.......2100
MIMAT0002341mne-miR-24-3p8.......2100
MIMAT0002339ppy-miR-24-3p8.......2100
MIMAT0002337mml-miR-24-3p8.......2100
MIMAT0002134ssc-miR-24-3p8.......2100
MIMAT0001792dre-miR-248.......2100
MIMAT0001188gga-miR-24-3p8.......2100
MIMAT0017164rno-miR-222-5p7.......1100
MIMAT0000794rno-miR-24-3p8.......2100
MIMAT0000219mmu-miR-24-3p8.......2100
MIMAT0000080hsa-miR-24-3p8.......2100
MIMAT0037191ata-miR171a-3p1_......685
MIMAT0037140ata-miR390-5p8......_385
MIMAT0037101ata-miR171c-3p2_......785
MIMAT0036848oha-miR-222a-5p6......_185
MIMAT0035840bra-miR390-5p8......_385
MIMAT0035519bdi-miR171f1_......685
MIMAT0035482sly-miR171e2_......785
MIMAT0035479sly-miR390b-5p8......_385
MIMAT0035467sly-miR390a-5p8......_385
MIMAT0034718eca-miR-9058b3_......885
MIMAT0034602eca-miR-9058a3_......885
MIMAT0034450eca-miR-89221......_685
MIMAT0034397cfa-miR-88903......_885
MIMAT0034359cfa-miR-88623......_885
MIMAT0033934atr-miR390.28......_385
MIMAT0033925atr-miR171b2_......785
MIMAT0033660sma-miR-8470-3p1......_685
MIMAT0032813cel-miR-8200-5p7_......285
MIMAT0031813cpa-miR390b8......_385
MIMAT0031812cpa-miR390a8......_385
MIMAT0031473ppe-miR3908......_385
MIMAT0031458ppe-miR169d1_......685
MIMAT0031343stu-miR390-5p8......_385
MIMAT0031311stu-miR4791_......685
MIMAT0031302stu-miR171d-3p2_......785
MIMAT0031248stu-miR171b-3p2_......785
MIMAT0030806prd-miR-7939a-5p3_......885
MIMAT0030762prd-miR-7939b-5p3_......885
MIMAT0030711prd-miR-7931-3p3......_885
MIMAT0030662prd-miR-7939h-5p3_......885
MIMAT0030582prd-miR-7896-5p2_......785
MIMAT0029963mtr-miR169i1_......685
MIMAT0029904mmu-miR-1258-5p3......_885
MIMAT0029879mmu-miR-3620-3p8......_385
MIMAT0029324lja-miR390b-5p8......_385
MIMAT0029322lja-miR390a-5p8......_385
MIMAT0029318lja-miR171d-5p2_......785
MIMAT0029316lja-miR171c1_......685
MIMAT0029240mes-miR171d2_......785
MIMAT0029239mes-miR171c2_......785
MIMAT0029238mes-miR171b2_......785
MIMAT0029216mes-miR169h1_......685
MIMAT0028382mml-miR-7208-5p3......_885
MIMAT0028321mml-miR-7184-3p1_......685
MIMAT0028226hsa-miR-7158-5p6_......185
MIMAT0028161ssc-miR-7143-5p8......_385
MIMAT0026187cme-miR169t1_......685
MIMAT0026135cme-miR390c8......_385
MIMAT0026134cme-miR390a8......_385
MIMAT0026133cme-miR390d8......_385
MIMAT0026123cme-miR171b2_......785
MIMAT0026122cme-miR171d2_......785
MIMAT0026085cme-miR171i2_......785
MIMAT0026079cme-miR169k1_......685
MIMAT0026075cme-miR169p1_......685
MIMAT0026074cme-miR169s1_......685
MIMAT0026073cme-miR169q1_......685
MIMAT0025974mdm-miR390f8......_385
MIMAT0025973mdm-miR390e8......_385
MIMAT0025972mdm-miR390d8......_385
MIMAT0025971mdm-miR390c8......_385
MIMAT0025970mdm-miR390b8......_385
MIMAT0025969mdm-miR390a8......_385
MIMAT0025951mdm-miR171n2_......785
MIMAT0025950mdm-miR171m2_......785
MIMAT0025949mdm-miR171l2_......785
MIMAT0025948mdm-miR171k2_......785
MIMAT0025947mdm-miR171j2_......785
MIMAT0025946mdm-miR171i1_......685
MIMAT0025943mdm-miR171f2_......785
MIMAT0025939mdm-miR171b2_......785
MIMAT0025938mdm-miR171a2_......785
MIMAT0028067mmu-miR-7080-3p8_......385
MIMAT0028007mmu-miR-7051-3p1_......685
MIMAT0027772mmu-miR-6936-5p2_......785
MIMAT0027737mmu-miR-6918-3p1_......685
MIMAT0027608hsa-miR-6854-5p8......_385
MIMAT0027595hsa-miR-6847-3p6_......185
MIMAT0027547hsa-miR-6823-3p1_......685
MIMAT0027514hsa-miR-6807-5p2_......785
MIMAT0025510hex-miR390b8......_385
MIMAT0025509hex-miR390a8......_385
MIMAT0024909gma-miR390g8......_385
MIMAT0024908gma-miR390f8......_385
MIMAT0024906gma-miR390d8......_385
MIMAT0027309ppe-miR171b2_......785
MIMAT0031172ppe-miR169e-5p1_......685
MIMAT0027285ppe-miR171h2_......785
MIMAT0024703nta-miR390c8......_385
MIMAT0024702nta-miR390b8......_385
MIMAT0024701nta-miR390a8......_385
MIMAT0024687nta-miR171b2_......785
MIMAT0027224lus-miR171i2_......785
MIMAT0027219lus-miR171h2_......785
MIMAT0027203lus-miR390d8......_385
MIMAT0027199lus-miR169i1_......685
MIMAT0027197lus-miR390c8......_385
MIMAT0027191lus-miR390b8......_385
MIMAT0027167lus-miR390a8......_385
MIMAT0027139lus-miR169e1_......685
MIMAT0024523cca-miR3908......_385
MIMAT0023236gma-miR171t2_......785
MIMAT0023217gma-miR169r1_......685
MIMAT0023215gma-miR171q2_......785
MIMAT0023211gma-miR169p1_......685
MIMAT0023208gma-miR171p2_......785
MIMAT0023206gma-miR169o1_......685
MIMAT0023204gma-miR171o-3p2_......785
MIMAT0023202gma-miR171n2_......785
MIMAT0023200gma-miR171m2_......785
MIMAT0022513ssl-miR171b2_......785
MIMAT0022512ssl-miR171a2_......785
MIMAT0021891aca-miR-222a-5p6......_185
MIMAT0022995gma-miR171k-3p2_......785
MIMAT0022750cme-miR390b8......_385
MIMAT0020660bdi-miR390a-5p8......_385
MIMAT0021111osa-miR51581_......685
MIMAT0020620mmu-miR-51128......_385
MIMAT0022983gma-miR169i-5p1_......685
MIMAT0021057gma-miR171i-3p2_......785
MIMAT0020102bfl-miR-4866-3p6......_185
MIMAT0020420tcc-miR390b8......_385
MIMAT0020419tcc-miR390a8......_385
MIMAT0020403tcc-miR169m1_......685
MIMAT0019735hsa-miR-46633......_885
MIMAT0019080hsa-miR-45371_......685
MIMAT0019055hsa-miR-45186......_185
MIMAT0018953hsa-miR-44378_......385
MIMAT0018456csi-miR171a2_......785
MIMAT0022972gma-miR171c-3p2_......785
MIMAT0018330gma-miR169d1_......685
MIMAT0018227tae-miR171b2_......785
MIMAT0016915hsa-miR-42847_......285
MIMAT0016856hsa-miR-43033......_885
MIMAT0016165ppy-miR-12331_......685
MIMAT0016161ppy-miR-1225-3p1_......685
MIMAT0017591aly-miR771-5p1_......685
MIMAT0017535aly-miR390b-5p8......_385
MIMAT0017533aly-miR390a-5p8......_385
MIMAT0017520aly-miR171c-3p2_......785
MIMAT0017518aly-miR171b-3p2_......785
MIMAT0017497aly-miR169g-5p1_......685
MIMAT0017495aly-miR169f-5p1_......685
MIMAT0017493aly-miR169e-5p1_......685
MIMAT0017491aly-miR169d-5p1_......685
MIMAT0015556bmo-miR-3267c3......_885
MIMAT0015522bmo-miR-33351_......685
MIMAT0014867mmu-miR-3079-3p8_......385
MIMAT0014185rco-miR390b8......_385
MIMAT0014184rco-miR390a8......_385
MIMAT0014173rco-miR171b2_......785
MIMAT0014172rco-miR171a2_......785
MIMAT0014171rco-miR169c1_......685
MIMAT0014092csi-miR3908......_385
MIMAT0014082ctr-miR1712_......785
MIMAT0014033zma-miR390b-5p8......_385
MIMAT0013998zma-miR390a-5p8......_385
MIMAT0012789mml-miR-12331_......685
MIMAT0013625bmo-miR-745-5p7_......285
MIMAT0013321mtr-miR169j1_......685
MIMAT0013248mtr-miR169k1_......685
MIMAT0012053bta-miR-24651_......685
MIMAT0011968bta-miR-24101......_685
MIMAT0011347sbi-miR3908......_385
MIMAT0010170bol-miR171a2_......785
MIMAT0010164bra-miR171d2_......785
MIMAT0010163bra-miR171c2_......785
MIMAT0010162bra-miR171b2_......785
MIMAT0010161bra-miR171a2_......785
MIMAT0007966ptr-miR-12331_......685
MIMAT0007964ptr-miR-12251_......685
MIMAT0007925sly-miR171d2_......785
MIMAT0007923sly-miR171b2_......785
MIMAT0006555vvi-miR171g2_......785
MIMAT0006546vvi-miR169h1_......685
MIMAT0006545vvi-miR169b1_......685
MIMAT0007671gga-miR-1764-5p6......_185
MIMAT0007623gga-miR-17243......_885
MIMAT0007361gma-miR390b-5p8......_385
MIMAT0007359gma-miR390a-5p8......_385
MIMAT0007358gma-miR171a1_......685
MIMAT0007344gga-miR-14668......_385
MIMAT0007105oan-miR-1376-5p6......_185
MIMAT0005707vvi-miR3908......_385
MIMAT0005696vvi-miR171f2_......785
MIMAT0005624bna-miR169m1_......685
MIMAT0005609bna-miR171e2_......785
MIMAT0005608bna-miR171d2_......785
MIMAT0005607bna-miR171c2_......785
MIMAT0005606bna-miR171b2_......785
MIMAT0005605bna-miR171a2_......785
MIMAT0005604bna-miR390c8......_385
MIMAT0005603bna-miR390b8......_385
MIMAT0005602bna-miR390a8......_385
MIMAT0005588hsa-miR-1233-3p1_......685
MIMAT0005573hsa-miR-1225-3p1_......685
MIMAT0005226smo-miR171d1_......685
MIMAT0005224smo-miR171b1_......685
MIMAT0005223smo-miR171a2_......785
MIMAT0020883dme-miR-985-5p8_......385
MIMAT0004376ppt-miR171b2_......785
MIMAT0004375ppt-miR171a1_......685
MIMAT0005817ghr-miR390c8......_385
MIMAT0005816ghr-miR390b8......_385
MIMAT0005815ghr-miR390a8......_385
MIMAT0011113mtr-miR171f2_......785
MIMAT0011109mtr-miR169h1_......685
MIMAT0011072mtr-miR3908......_385
MIMAT0003930ath-miR7711_......685
MIMAT0003919ppt-miR390c-5p8......_385
MIMAT0014817mmu-miR-3106-5p7_......285
MIMAT0003132ppt-miR390b8......_385
MIMAT0003131ppt-miR390a8......_385
MIMAT0002014ptc-miR390d-5p8......_385
MIMAT0002013ptc-miR390c8......_385
MIMAT0002012ptc-miR390b8......_385
MIMAT0002011ptc-miR390a8......_385
MIMAT0001984ptc-miR171b2_......785
MIMAT0001983ptc-miR171a-3p2_......785
MIMAT0001970ptc-miR169n-5p1_......685
MIMAT0001756sbi-miR171f2_......785
MIMAT0001746zma-miR171h-3p2_......785
MIMAT0001745zma-miR171k-3p2_......785
MIMAT0001695zma-miR171f-3p2_......785
MIMAT0001588osa-miR390-5p8......_385
MIMAT0001466sbi-miR171e2_......785
MIMAT0001386zma-miR171b-3p2_......785
MIMAT0001077osa-miR171h2_......785
MIMAT0000932ath-miR390b-5p8......_385
MIMAT0000931ath-miR390a-5p8......_385
MIMAT0000921ath-miR171c-3p2_......785
MIMAT0000920ath-miR171b-3p2_......785
MIMAT0000911ath-miR169g-5p1_......685
MIMAT0000910ath-miR169f-5p1_......685
MIMAT0000909ath-miR169e1_......685
MIMAT0000908ath-miR169d1_......685