| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | ctgcccct | 8 | ||
| MIMAT0036553 | tch-miR-486-3p | 8 | ......._ | 2 | 87 |
| MIMAT0036136 | chi-miR-324-3p | 2 | ......._ | 8 | 87 |
| MIMAT0032326 | ssa-miR-130b-2-5p | 1 | _....... | 7 | 87 |
| MIMAT0030710 | prd-miR-7931-5p | 8 | ......._ | 2 | 87 |
| MIMAT0028529 | mdo-miR-7277-3p | 8 | ......._ | 2 | 87 |
| MIMAT0027808 | mmu-miR-6954-5p | 8 | ......._ | 2 | 87 |
| MIMAT0027806 | mmu-miR-6953-5p | 8 | _....... | 2 | 87 |
| MIMAT0027387 | hsa-miR-6743-5p | 8 | _....... | 2 | 87 |
| MIMAT0023968 | cgr-miR-486-3p | 8 | ......._ | 2 | 87 |
| MIMAT0019777 | hsa-miR-4688 | 8 | _....... | 2 | 87 |
| MIMAT0019654 | pma-miR-4620 | 8 | _....... | 2 | 87 |
| MIMAT0019635 | pma-miR-4601 | 1 | _....... | 7 | 87 |
| MIMAT0016241 | ppy-miR-1913 | 2 | ......._ | 8 | 87 |
| MIMAT0015828 | ppy-miR-324-3p | 2 | ......._ | 8 | 87 |
| MIMAT0014944 | mmu-miR-486b-3p | 8 | ......._ | 2 | 87 |
| MIMAT0013187 | eca-miR-486-3p | 8 | ......._ | 2 | 87 |
| MIMAT0008098 | ptr-miR-324 | 2 | ......._ | 8 | 87 |
| MIMAT0007888 | hsa-miR-1913 | 2 | ......._ | 8 | 87 |
| MIMAT0006345 | mml-miR-486-3p | 8 | ......._ | 2 | 87 |
| MIMAT0006267 | mml-miR-324-3p | 2 | ......._ | 8 | 87 |
| MIMAT0003621 | xtr-miR-202-3p | 7 | _....... | 1 | 87 |
| MIMAT0017206 | mmu-miR-486a-3p | 8 | ......._ | 2 | 87 |
| MIMAT0004762 | hsa-miR-486-3p | 8 | ......._ | 2 | 87 |
| MIMAT0000762 | hsa-miR-324-3p | 2 | ......._ | 8 | 87 |
| MIMAT0017028 | rno-miR-326-5p | 8 | ......._ | 2 | 87 |
| MIMAT0017027 | mmu-miR-326-5p | 8 | ......._ | 2 | 87 |
| MIMAT0028121 | hsa-miR-7112-5p | 8 | ......g. | 1 | 87 |
| MIMAT0023812 | cgr-miR-185-3p | 8 | .a...... | 1 | 87 |
| MIMAT0021741 | aca-miR-130a-2-5p | 1 | ......t. | 8 | 87 |
| MIMAT0026831 | mml-miR-185-3p | 8 | .a...... | 1 | 87 |
| MIMAT0007473 | gga-miR-1607 | 8 | .c...... | 1 | 87 |
| MIMAT0004611 | hsa-miR-185-3p | 8 | .a...... | 1 | 87 |
| MIMAT0016996 | mmu-miR-185-3p | 8 | .a...... | 1 | 87 |
| MIMAT0037155 | ata-miR9772b-3p | 8 | _......_ | 3 | 75 |
| MIMAT0037107 | ata-miR9772a-3p | 8 | _......_ | 3 | 75 |
| MIMAT0036771 | oha-miR-18b-3p | 2 | ......__ | 7 | 75 |
| MIMAT0036769 | oha-miR-18a-3p | 2 | ......__ | 7 | 75 |
| MIMAT0036297 | chi-miR-874-3p | 1 | ......__ | 6 | 75 |
| MIMAT0036220 | chi-miR-423-5p | 8 | __...... | 3 | 75 |
| MIMAT0036018 | chi-miR-18b-3p | 3 | ......__ | 8 | 75 |
| MIMAT0036016 | chi-miR-18a-3p | 2 | ......__ | 7 | 75 |
| MIMAT0035148 | efu-miR-331 | 1 | __...... | 6 | 75 |
| MIMAT0035102 | efu-miR-874 | 1 | ......__ | 6 | 75 |
| MIMAT0035024 | efu-miR-423 | 8 | __...... | 3 | 75 |
| MIMAT0035023 | efu-miR-9318b | 6 | _......_ | 1 | 75 |
| MIMAT0034740 | eca-miR-9163 | 1 | _......_ | 6 | 75 |
| MIMAT0034717 | eca-miR-8908m | 1 | ......__ | 6 | 75 |
| MIMAT0034712 | eca-miR-8908l | 2 | ......__ | 7 | 75 |
| MIMAT0034481 | eca-miR-8952 | 1 | _......_ | 6 | 75 |
| MIMAT0034461 | eca-miR-185 | 7 | __...... | 2 | 75 |
| MIMAT0034284 | cfa-miR-8794 | 1 | _......_ | 6 | 75 |
| MIMAT0034082 | gra-miR8701 | 6 | __...... | 1 | 75 |
| MIMAT0033987 | gra-miR8637 | 3 | __...... | 8 | 75 |
| MIMAT0033777 | pxy-miR-8532-5p | 7 | _......_ | 2 | 75 |
| MIMAT0033708 | pxy-miR-8498 | 8 | _......_ | 3 | 75 |
| MIMAT0033705 | pxy-miR-8495-3p | 8 | _......_ | 3 | 75 |
| MIMAT0033406 | str-miR-7880u-5p | 1 | _......_ | 6 | 75 |
| MIMAT0032998 | ppc-miR-2237d-3p | 1 | ......__ | 6 | 75 |
| MIMAT0032978 | ppc-miR-8255-5p | 3 | _......_ | 8 | 75 |
| MIMAT0032973 | ppc-miR-8252a-3p | 3 | ......__ | 8 | 75 |
| MIMAT0032624 | ssa-miR-365-2-5p | 6 | __...... | 1 | 75 |
| MIMAT0032435 | ssa-miR-18b-3p | 1 | ......__ | 6 | 75 |
| MIMAT0032433 | ssa-miR-18a-3p | 2 | ......__ | 7 | 75 |
| MIMAT0032330 | ssa-miR-130d-3-5p | 1 | __...... | 6 | 75 |
| MIMAT0032324 | ssa-miR-130b-5p | 1 | __...... | 6 | 75 |
| MIMAT0030411 | hsa-miR-7843-5p | 8 | ......__ | 3 | 75 |
| MIMAT0029860 | mmu-miR-7676-5p | 7 | ......__ | 2 | 75 |
| MIMAT0029812 | mmu-miR-7653-5p | 8 | __...... | 3 | 75 |
| MIMAT0031150 | aja-miR-331 | 1 | __...... | 6 | 75 |
| MIMAT0029010 | oan-miR-7430-5p | 7 | ......__ | 2 | 75 |
| MIMAT0028767 | mdo-miR-18b-3p | 3 | ......__ | 8 | 75 |
| MIMAT0028641 | mdo-miR-7320-3p | 6 | ......__ | 1 | 75 |
| MIMAT0028580 | mdo-miR-449c-5p | 6 | ......__ | 1 | 75 |
| MIMAT0028540 | mdo-miR-7283-5p | 3 | _......_ | 8 | 75 |
| MIMAT0028535 | mdo-miR-7280-3p | 3 | _......_ | 8 | 75 |
| MIMAT0028320 | mml-miR-7184-5p | 6 | __...... | 1 | 75 |
| MIMAT0028045 | mmu-miR-7069-3p | 2 | ......__ | 7 | 75 |
| MIMAT0027898 | mmu-miR-6998-5p | 8 | ......__ | 3 | 75 |
| MIMAT0027867 | mmu-miR-6982-3p | 3 | __...... | 8 | 75 |
| MIMAT0027742 | mmu-miR-6921-5p | 8 | __...... | 3 | 75 |
| MIMAT0027741 | mmu-miR-6920-3p | 3 | ......__ | 8 | 75 |
| MIMAT0027694 | mmu-miR-6897-5p | 8 | _......_ | 3 | 75 |
| MIMAT0027658 | hsa-miR-6879-5p | 8 | ......__ | 3 | 75 |
| MIMAT0027526 | hsa-miR-6813-5p | 7 | __...... | 2 | 75 |
| MIMAT0027478 | hsa-miR-6789-5p | 8 | __...... | 3 | 75 |
| MIMAT0027450 | hsa-miR-6775-5p | 8 | _......_ | 3 | 75 |
| MIMAT0027439 | hsa-miR-6769a-3p | 3 | __...... | 8 | 75 |
| MIMAT0027371 | hsa-miR-6735-5p | 8 | ......__ | 3 | 75 |
| MIMAT0025852 | hsa-miR-6721-5p | 7 | ......__ | 2 | 75 |
| MIMAT0025384 | ssc-miR-874 | 1 | ......__ | 6 | 75 |
| MIMAT0025143 | mmu-miR-6393 | 1 | ......__ | 6 | 75 |
| MIMAT0025071 | rno-miR-3072 | 1 | _......_ | 6 | 75 |
| MIMAT0024406 | ppy-miR-2278 | 8 | ......__ | 3 | 75 |
| MIMAT0024140 | ggo-miR-874 | 1 | ......__ | 6 | 75 |
| MIMAT0024128 | ggo-miR-331 | 1 | __...... | 6 | 75 |
| MIMAT0024085 | ggo-miR-423 | 8 | __...... | 3 | 75 |
| MIMAT0024007 | cgr-miR-874 | 1 | ......__ | 6 | 75 |
| MIMAT0023956 | cgr-miR-423-5p | 8 | __...... | 3 | 75 |
| MIMAT0023917 | cgr-miR-331-3p | 1 | __...... | 6 | 75 |
| MIMAT0023893 | cgr-miR-3072-3p | 1 | _......_ | 6 | 75 |
| MIMAT0023818 | cgr-miR-18a-3p | 2 | ......__ | 7 | 75 |
| MIMAT0023710 | hsa-miR-6085 | 7 | __...... | 2 | 75 |
| MIMAT0023509 | hco-miR-2159-3p | 8 | __...... | 3 | 75 |
| MIMAT0023416 | hco-miR-5930 | 7 | __...... | 2 | 75 |
| MIMAT0023079 | tur-miR-5736b-3p | 2 | ......__ | 7 | 75 |
| MIMAT0027103 | hsa-miR-5699-5p | 1 | _......_ | 6 | 75 |
| MIMAT0022119 | osa-miR5486 | 6 | __...... | 1 | 75 |
| MIMAT0021820 | aca-miR-18b-3p | 3 | ......__ | 8 | 75 |
| MIMAT0021818 | aca-miR-18a-3p | 2 | ......__ | 7 | 75 |
| MIMAT0021308 | mtr-miR5273 | 7 | __...... | 2 | 75 |
| MIMAT0021239 | mtr-miR5243 | 7 | ......__ | 2 | 75 |
| MIMAT0020615 | mmu-miR-5107-5p | 7 | ......__ | 2 | 75 |
| MIMAT0021082 | hsa-miR-5090 | 8 | _......_ | 3 | 75 |
| MIMAT0019941 | hsa-miR-4436b-3p | 8 | ......__ | 3 | 75 |
| MIMAT0019904 | hsa-miR-4758-3p | 1 | _......_ | 6 | 75 |
| MIMAT0019886 | hsa-miR-4749-3p | 2 | __...... | 7 | 75 |
| MIMAT0022977 | hsa-miR-4632-5p | 8 | ......__ | 3 | 75 |
| MIMAT0018129 | pab-miR3697 | 3 | __...... | 8 | 75 |
| MIMAT0016707 | cin-miR-4116-5p | 6 | _......_ | 1 | 75 |
| MIMAT0016500 | cin-miR-4008c-3p | 6 | __...... | 1 | 75 |
| MIMAT0017856 | rno-miR-3573-5p | 8 | __...... | 3 | 75 |
| MIMAT0017832 | rno-miR-3562 | 8 | _......_ | 3 | 75 |
| MIMAT0016377 | gga-miR-3528 | 3 | _......_ | 8 | 75 |
| MIMAT0016112 | ppy-miR-874 | 1 | ......__ | 6 | 75 |
| MIMAT0015882 | ppy-miR-423-5p | 8 | __...... | 3 | 75 |
| MIMAT0015836 | ppy-miR-331-3p | 1 | __...... | 6 | 75 |
| MIMAT0019217 | hsa-miR-3189-5p | 1 | _......_ | 6 | 75 |
| MIMAT0015064 | hsa-miR-3184-5p | 8 | __...... | 3 | 75 |
| MIMAT0019210 | hsa-miR-3157-3p | 1 | ......__ | 6 | 75 |
| MIMAT0014895 | mmu-miR-3087-5p | 8 | ......__ | 3 | 75 |
| MIMAT0014853 | mmu-miR-3072-3p | 1 | _......_ | 6 | 75 |
| MIMAT0014846 | mmu-miR-3070-5p | 2 | __...... | 7 | 75 |
| MIMAT0014780 | api-miR-3042 | 8 | ......__ | 3 | 75 |
| MIMAT0013930 | ssc-miR-331-3p | 1 | __...... | 6 | 75 |
| MIMAT0013880 | ssc-miR-423-5p | 8 | __...... | 3 | 75 |
| MIMAT0013188 | eca-miR-331 | 1 | __...... | 6 | 75 |
| MIMAT0013069 | eca-miR-874 | 1 | ......__ | 6 | 75 |
| MIMAT0013039 | eca-miR-423-5p | 8 | __...... | 3 | 75 |
| MIMAT0026934 | mdo-miR-106-3p | 2 | ......__ | 7 | 75 |
| MIMAT0012207 | dme-miR-2496-3p | 8 | _......_ | 3 | 75 |
| MIMAT0012057 | bta-miR-2467-3p | 8 | ......__ | 3 | 75 |
| MIMAT0012030 | bta-miR-2450a | 7 | ......__ | 2 | 75 |
| MIMAT0012027 | bta-miR-2449 | 7 | ......__ | 2 | 75 |
| MIMAT0011935 | bta-miR-2385-5p | 8 | _......_ | 3 | 75 |
| MIMAT0011898 | bta-miR-2360 | 7 | ......__ | 2 | 75 |
| MIMAT0011402 | sme-miR-2206-5p | 7 | ......__ | 2 | 75 |
| MIMAT0009930 | cfa-miR-874 | 1 | ......__ | 6 | 75 |
| MIMAT0009895 | cfa-miR-331 | 1 | __...... | 6 | 75 |
| MIMAT0009378 | bta-miR-874 | 1 | ......__ | 6 | 75 |
| MIMAT0008325 | ptr-miR-874 | 1 | ......__ | 6 | 75 |
| MIMAT0008103 | ptr-miR-331 | 1 | __...... | 6 | 75 |
| MIMAT0006742 | cfa-miR-423a | 8 | __...... | 3 | 75 |
| MIMAT0032036 | cfa-miR-486-3p | 8 | _......_ | 3 | 75 |
| MIMAT0006516 | mml-miR-874-3p | 1 | ......__ | 6 | 75 |
| MIMAT0006321 | mml-miR-423-5p | 8 | __...... | 3 | 75 |
| MIMAT0006273 | mml-miR-331-3p | 1 | __...... | 6 | 75 |
| MIMAT0026846 | mml-miR-210-5p | 2 | __...... | 7 | 75 |
| MIMAT0026782 | gga-miR-1754-3p | 7 | ......__ | 2 | 75 |
| MIMAT0007637 | gga-miR-1735 | 6 | __...... | 1 | 75 |
| MIMAT0007540 | gga-miR-1659 | 8 | ......__ | 3 | 75 |
| MIMAT0007522 | gga-miR-1646 | 2 | ......__ | 7 | 75 |
| MIMAT0007472 | gga-miR-1606 | 8 | _......_ | 3 | 75 |
| MIMAT0007421 | gga-miR-1562-3p | 3 | _......_ | 8 | 75 |
| MIMAT0007330 | gga-miR-1453 | 7 | ......__ | 2 | 75 |
| MIMAT0006852 | oan-miR-18-3p | 3 | ......__ | 8 | 75 |
| MIMAT0017305 | rno-miR-423-5p | 8 | __...... | 3 | 75 |
| MIMAT0005284 | rno-miR-874-3p | 1 | ......__ | 6 | 75 |
| MIMAT0004460 | mdv2-miR-M19-3p | 3 | _......_ | 8 | 75 |
| MIMAT0004911 | hsa-miR-874-3p | 1 | ......__ | 6 | 75 |
| MIMAT0017270 | mmu-miR-18b-3p | 3 | ......__ | 8 | 75 |
| MIMAT0004853 | mmu-miR-874-3p | 1 | ......__ | 6 | 75 |
| MIMAT0004339 | bta-miR-331-3p | 1 | __...... | 6 | 75 |
| MIMAT0026705 | mdo-miR-18a-3p | 2 | ......__ | 7 | 75 |
| MIMAT0012537 | bta-miR-423-5p | 8 | __...... | 3 | 75 |
| MIMAT0005462 | xtr-miR-18a-3p | 2 | ......__ | 7 | 75 |
| MIMAT0004825 | mmu-miR-423-5p | 8 | __...... | 3 | 75 |
| MIMAT0017238 | mmu-miR-665-5p | 6 | __...... | 1 | 75 |
| MIMAT0003344 | sv40-miR-S1-5p | 8 | __...... | 3 | 75 |
| MIMAT0026595 | mml-miR-18a-3p | 2 | ......__ | 7 | 75 |
| MIMAT0003397 | dre-miR-18b-3p | 1 | ......__ | 6 | 75 |
| MIMAT0004748 | hsa-miR-423-5p | 8 | __...... | 3 | 75 |
| MIMAT0026516 | gga-miR-18b-3p | 3 | ......__ | 8 | 75 |
| MIMAT0026499 | gga-miR-18a-3p | 2 | ......__ | 7 | 75 |
| MIMAT0017095 | rno-miR-18a-3p | 2 | ......__ | 7 | 75 |
| MIMAT0000760 | hsa-miR-331-3p | 1 | __...... | 6 | 75 |
| MIMAT0000571 | mmu-miR-331-3p | 1 | __...... | 6 | 75 |
| MIMAT0000570 | rno-miR-331-3p | 1 | __...... | 6 | 75 |
| MIMAT0017030 | mmu-miR-328-5p | 8 | _......_ | 3 | 75 |
| MIMAT0017029 | rno-miR-328a-5p | 8 | _......_ | 3 | 75 |
| MIMAT0004626 | mmu-miR-18a-3p | 2 | ......__ | 7 | 75 |
| MIMAT0026475 | hsa-miR-210-5p | 2 | __...... | 7 | 75 |
| MIMAT0002891 | hsa-miR-18a-3p | 2 | ......__ | 7 | 75 |
