| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | ctggacc | 7 | ||
| MIMAT0024775 | nta-miR6161b | 2 | ....... | 8 | 100 |
| MIMAT0024774 | nta-miR6161a | 2 | ....... | 8 | 100 |
| MIMAT0020634 | mmu-miR-5124a | 7 | ....... | 1 | 100 |
| MIMAT0004815 | ebv-miR-BART7-5p | 2 | ....... | 8 | 100 |
| MIMAT0002613 | mne-miR-198 | 7 | ....... | 1 | 100 |
| MIMAT0002612 | lla-miR-198 | 7 | ....... | 1 | 100 |
| MIMAT0002611 | sla-miR-198 | 7 | ....... | 1 | 100 |
| MIMAT0002610 | mml-miR-198 | 7 | ....... | 1 | 100 |
| MIMAT0002609 | ptr-miR-198 | 7 | ....... | 1 | 100 |
| MIMAT0002608 | ppy-miR-198 | 7 | ....... | 1 | 100 |
| MIMAT0002607 | ppa-miR-198 | 7 | ....... | 1 | 100 |
| MIMAT0002606 | age-miR-198 | 7 | ....... | 1 | 100 |
| MIMAT0002605 | ggo-miR-198 | 7 | ....... | 1 | 100 |
| MIMAT0000228 | hsa-miR-198 | 7 | ....... | 1 | 100 |
| MIMAT0036972 | bta-miR-378d | 1 | ......_ | 6 | 85 |
| MIMAT0036839 | oha-miR-2188-5p | 8 | _...... | 3 | 85 |
| MIMAT0036727 | oha-miR-145-5p | 6 | ......_ | 1 | 85 |
| MIMAT0035967 | chi-miR-145-5p | 6 | ......_ | 1 | 85 |
| MIMAT0035416 | nve-miR-9455 | 6 | ......_ | 1 | 85 |
| MIMAT0035366 | bol-miR9411 | 3 | ......_ | 8 | 85 |
| MIMAT0035122 | efu-miR-145 | 6 | ......_ | 1 | 85 |
| MIMAT0034813 | efu-miR-378 | 3 | ......_ | 8 | 85 |
| MIMAT0034761 | eca-miR-9180 | 3 | _...... | 8 | 85 |
| MIMAT0034672 | eca-miR-9122 | 3 | ......_ | 8 | 85 |
| MIMAT0034586 | eca-miR-9043 | 2 | _...... | 7 | 85 |
| MIMAT0032522 | ssa-miR-2188-5p | 8 | _...... | 3 | 85 |
| MIMAT0032369 | ssa-miR-145-5p | 6 | ......_ | 1 | 85 |
| MIMAT0030985 | hsa-miR-8058 | 1 | ......_ | 6 | 85 |
| MIMAT0029797 | mmu-miR-7647-3p | 8 | ......_ | 3 | 85 |
| MIMAT0029471 | ipu-miR-2188 | 8 | _...... | 3 | 85 |
| MIMAT0029422 | ipu-miR-145 | 6 | ......_ | 1 | 85 |
| MIMAT0029200 | mes-miR166i | 2 | _...... | 7 | 85 |
| MIMAT0028456 | mdo-miR-7245-5p | 7 | _...... | 2 | 85 |
| MIMAT0028441 | mmu-miR-7236-3p | 2 | _...... | 7 | 85 |
| MIMAT0028181 | dev-miR-D9-3p | 8 | ......_ | 3 | 85 |
| MIMAT0027624 | hsa-miR-6861-3p | 1 | _...... | 6 | 85 |
| MIMAT0025105 | mmu-miR-145b | 6 | ......_ | 1 | 85 |
| MIMAT0027314 | ppe-miR6284 | 3 | _...... | 8 | 85 |
| MIMAT0024792 | hbr-miR6172 | 1 | _...... | 6 | 85 |
| MIMAT0023266 | osa-miR5798 | 1 | ......_ | 6 | 85 |
| MIMAT0023207 | gma-miR319n | 3 | _...... | 8 | 85 |
| MIMAT0021882 | aca-miR-2188-5p | 8 | _...... | 3 | 85 |
| MIMAT0021773 | aca-miR-145-5p | 6 | ......_ | 1 | 85 |
| MIMAT0021418 | asu-let-7-3p | 8 | ......_ | 3 | 85 |
| MIMAT0019978 | hsa-miR-4800-5p | 3 | _...... | 8 | 85 |
| MIMAT0019932 | hsa-miR-4776-5p | 2 | _...... | 7 | 85 |
| MIMAT0019662 | pma-miR-4628 | 7 | _...... | 2 | 85 |
| MIMAT0019595 | pma-miR-4563 | 3 | ......_ | 8 | 85 |
| MIMAT0019476 | pma-miR-145-5p | 6 | ......_ | 1 | 85 |
| MIMAT0019348 | mmu-miR-378b | 1 | ......_ | 6 | 85 |
| MIMAT0019075 | hsa-miR-4535 | 2 | _...... | 7 | 85 |
| MIMAT0019059 | hsa-miR-1269b | 1 | ......_ | 6 | 85 |
| MIMAT0018710 | tca-miR-3836b-5p | 7 | _...... | 2 | 85 |
| MIMAT0018119 | hsa-miR-3690 | 3 | ......_ | 8 | 85 |
| MIMAT0018074 | hsa-miR-3654 | 3 | ......_ | 8 | 85 |
| MIMAT0016372 | gga-miR-2188-5p | 8 | _...... | 3 | 85 |
| MIMAT0016193 | ppy-miR-1269 | 1 | ......_ | 6 | 85 |
| MIMAT0014480 | tgu-miR-2188-5p | 8 | _...... | 3 | 85 |
| MIMAT0013064 | eca-miR-145 | 6 | ......_ | 1 | 85 |
| MIMAT0012193 | xtr-miR-2188 | 8 | _...... | 3 | 85 |
| MIMAT0011309 | dre-miR-2188-5p | 8 | _...... | 3 | 85 |
| MIMAT0009863 | cfa-miR-145 | 6 | ......_ | 1 | 85 |
| MIMAT0007493 | gga-miR-1625-5p | 1 | _...... | 6 | 85 |
| MIMAT0007141 | oan-miR-145-5p | 6 | ......_ | 1 | 85 |
| MIMAT0007024 | oan-miR-1362-3p | 8 | ......_ | 3 | 85 |
| MIMAT0006895 | oan-miR-1422k-5p | 8 | ......_ | 3 | 85 |
| MIMAT0005923 | hsa-miR-1269a | 1 | ......_ | 6 | 85 |
| MIMAT0005423 | cre-miR1166.2 | 7 | _...... | 2 | 85 |
| MIMAT0005422 | cre-miR1166.1 | 1 | _...... | 6 | 85 |
| MIMAT0005405 | cre-miR1156.1 | 1 | _...... | 6 | 85 |
| MIMAT0005498 | dme-miR-982-5p | 3 | ......_ | 8 | 85 |
| MIMAT0004116 | mdo-miR-145-5p | 6 | ......_ | 1 | 85 |
| MIMAT0003688 | xtr-miR-145 | 6 | ......_ | 1 | 85 |
| MIMAT0003542 | bta-miR-145 | 6 | ......_ | 1 | 85 |
| MIMAT0004816 | ebv-miR-BART9-5p | 3 | ......_ | 8 | 85 |
| MIMAT0002270 | mne-miR-145 | 6 | ......_ | 1 | 85 |
| MIMAT0002269 | ppy-miR-145 | 6 | ......_ | 1 | 85 |
| MIMAT0002268 | ggo-miR-145 | 6 | ......_ | 1 | 85 |
| MIMAT0002267 | ptr-miR-145 | 6 | ......_ | 1 | 85 |
| MIMAT0002266 | mml-miR-145-5p | 6 | ......_ | 1 | 85 |
| MIMAT0002123 | ssc-miR-145-5p | 6 | ......_ | 1 | 85 |
| MIMAT0001842 | dre-miR-145-5p | 6 | ......_ | 1 | 85 |
| MIMAT0000851 | rno-miR-145-5p | 6 | ......_ | 1 | 85 |
| MIMAT0000437 | hsa-miR-145-5p | 6 | ......_ | 1 | 85 |
| MIMAT0000157 | mmu-miR-145a-5p | 6 | ......_ | 1 | 85 |
