VIRmiRNA | Resource for experimental viral miRNA and their targets

Result for your query miRNA sequence
>prv-miR-11-1
cugggag

RED	=100 % Complementary sequence
.	=Identical residue
blue alphabets	=mismatch
_	=Gap

Acc number	miRNA	Start	Alignment	End	% Identity
Query		1	`ctgggag`	7
MIMAT0036894	oha-miR-30c-1-3p	1	`.......`	7	100
MIMAT0036131	chi-miR-30f-3p	1	`.......`	7	100
MIMAT0036126	chi-miR-30c-3p	1	`.......`	7	100
MIMAT0036124	chi-miR-30b-3p	1	`.......`	7	100
MIMAT0035135	efu-miR-30c	1	`.......`	7	100
MIMAT0032612	ssa-miR-30e-3p	1	`.......`	7	100
MIMAT0032602	ssa-miR-30a-4-3p	1	`.......`	7	100
MIMAT0032601	ssa-miR-30a-3-3p	1	`.......`	7	100
MIMAT0030415	hsa-miR-1273h-5p	1	`.......`	7	100
MIMAT0028551	mdo-miR-30b-3p	1	`.......`	7	100
MIMAT0027892	mmu-miR-6995-5p	1	`.......`	7	100
MIMAT0027476	hsa-miR-6788-5p	1	`.......`	7	100
MIMAT0027458	hsa-miR-6779-5p	1	`.......`	7	100
MIMAT0024042	ptr-miR-3192	2	`.......`	8	100
MIMAT0021925	aca-miR-30c-3p	1	`.......`	7	100
MIMAT0021923	aca-miR-30b-3p	1	`.......`	7	100
MIMAT0020197	dme-miR-4970-5p	1	`.......`	7	100
MIMAT0019007	hsa-miR-3689c	1	`.......`	7	100
MIMAT0022976	ssc-miR-30c-1-3p	1	`.......`	7	100
MIMAT0018181	hsa-miR-3689b-3p	1	`.......`	7	100
MIMAT0018118	hsa-miR-3689a-3p	1	`.......`	7	100
MIMAT0015076	hsa-miR-3192-5p	2	`.......`	8	100
MIMAT0014686	tgu-miR-30c-3p	1	`.......`	7	100
MIMAT0015269	ssc-miR-30b-3p	1	`.......`	7	100
MIMAT0007044	oan-miR-30b-3p	1	`.......`	7	100
MIMAT0006912	oan-miR-30c-2-3p	1	`.......`	7	100
MIMAT0012534	bta-miR-30b-3p	1	`.......`	7	100
MIMAT0026563	mml-miR-30b-3p	1	`.......`	7	100
MIMAT0022922	ssc-miR-30c-3p	1	`.......`	7	100
MIMAT0005442	rno-miR-30c-2-3p	1	`.......`	7	100
MIMAT0004719	rno-miR-30c-1-3p	1	`.......`	7	100
MIMAT0004674	hsa-miR-30c-1-3p	1	`.......`	7	100
MIMAT0005438	mmu-miR-30c-2-3p	1	`.......`	7	100
MIMAT0004616	mmu-miR-30c-1-3p	1	`.......`	7	100
MIMAT0004589	hsa-miR-30b-3p	1	`.......`	7	100
MIMAT0004550	hsa-miR-30c-2-3p	1	`.......`	7	100
MIMAT0036893	oha-miR-30c-2-3p	3	`......_`	8	85
MIMAT0036736	oha-miR-150	7	`_......`	2	85
MIMAT0036492	tch-miR-188-3p	6	`_......`	1	85
MIMAT0036271	chi-miR-532-3p	7	`_......`	2	85
MIMAT0036014	chi-miR-188-3p	6	`_......`	1	85
MIMAT0035980	chi-miR-150	7	`_......`	2	85
MIMAT0035089	efu-miR-204	3	`......_`	8	85
MIMAT0035077	efu-miR-150	7	`_......`	2	85
MIMAT0034556	eca-miR-9015	6	`......_`	1	85
MIMAT0034400	cfa-miR-769	1	`......_`	6	85
MIMAT0034390	cfa-miR-8886	6	`......_`	1	85
MIMAT0034342	cfa-miR-8847	6	`......_`	1	85
MIMAT0034309	cfa-miR-8819	8	`......_`	3	85
MIMAT0034171	gra-miR8747	6	`......_`	1	85
MIMAT0034134	gra-miR7506b	1	`......_`	6	85
MIMAT0032989	ppc-miR-8260-5p	6	`......_`	1	85
MIMAT0032936	ppc-miR-8240-5p	3	`_......`	8	85
MIMAT0032494	ssa-miR-205a-2-3p	8	`......_`	3	85
MIMAT0032493	ssa-miR-205a-3p	8	`......_`	3	85
MIMAT0032383	ssa-miR-150-5p	7	`_......`	2	85
MIMAT0031716	bbe-miR-705-5p	3	`_......`	8	85
MIMAT0031012	hsa-miR-8085	1	`_......`	6	85
MIMAT0030034	oar-miR-150	7	`_......`	2	85
MIMAT0029630	crm-miR-7611	1	`......_`	6	85
MIMAT0029426	ipu-miR-150	7	`_......`	2	85
MIMAT0029071	gga-miR-7458-3p	3	`......_`	8	85
MIMAT0031028	oan-miR-30c-1-3p	1	`_......`	6	85
MIMAT0031090	mdo-miR-30c-2-3p	1	`_......`	6	85
MIMAT0028503	mdo-miR-30c-1-3p	1	`_......`	6	85
MIMAT0028357	mml-miR-7197-3p	1	`_......`	6	85
MIMAT0028151	ssc-miR-7138-5p	6	`......_`	1	85
MIMAT0028109	hsa-miR-7106-5p	1	`_......`	6	85
MIMAT0027974	mmu-miR-7035-5p	3	`......_`	8	85
MIMAT0027942	mmu-miR-7019-5p	3	`......_`	8	85
MIMAT0027920	mmu-miR-7008-5p	3	`_......`	8	85
MIMAT0027888	mmu-miR-6993-5p	3	`_......`	8	85
MIMAT0027816	mmu-miR-6958-5p	2	`_......`	7	85
MIMAT0027790	mmu-miR-6945-5p	3	`......_`	8	85
MIMAT0027770	mmu-miR-6935-5p	3	`_......`	8	85
MIMAT0027744	mmu-miR-6922-5p	3	`_......`	8	85
MIMAT0027726	mmu-miR-6913-5p	1	`_......`	6	85
MIMAT0027714	mmu-miR-6907-5p	3	`......_`	8	85
MIMAT0027642	hsa-miR-6871-5p	3	`_......`	8	85
MIMAT0027554	hsa-miR-6827-5p	1	`_......`	6	85
MIMAT0027470	hsa-miR-6785-5p	1	`_......`	6	85
MIMAT0027460	hsa-miR-6780a-5p	2	`_......`	7	85
MIMAT0027456	hsa-miR-6778-5p	3	`_......`	8	85
MIMAT0027428	hsa-miR-6764-5p	6	`......_`	1	85
MIMAT0027363	hsa-miR-6731-5p	1	`_......`	6	85
MIMAT0025818	gga-miR-6708-5p	3	`_......`	8	85
MIMAT0025809	gga-miR-6700-5p	1	`......_`	6	85
MIMAT0025742	gga-miR-6645-5p	1	`_......`	6	85
MIMAT0025725	gga-miR-6629-5p	1	`......_`	6	85
MIMAT0025686	gga-miR-6593-5p	3	`......_`	8	85
MIMAT0025625	gga-miR-6559-5p	1	`_......`	6	85
MIMAT0025365	ssc-miR-150	7	`_......`	2	85
MIMAT0025277	ptc-miR482c-5p	3	`_......`	8	85
MIMAT0025178	mmu-miR-451b	1	`_......`	6	85
MIMAT0025112	mmu-miR-6368	1	`......_`	6	85
MIMAT0027315	ppe-miR482d-3p	7	`_......`	2	85
MIMAT0024217	ggo-miR-150	7	`_......`	2	85
MIMAT0023982	cgr-miR-532-3p	7	`_......`	2	85
MIMAT0023897	cgr-miR-30b-3p	1	`......_`	6	85
MIMAT0022806	sha-miR-150	7	`_......`	2	85
MIMAT0022584	ola-miR-150	7	`_......`	2	85
MIMAT0022301	hsa-miR-5591-5p	1	`_......`	6	85
MIMAT0022148	osa-miR5514	6	`......_`	1	85
MIMAT0022077	aca-miR-5408c-5p	8	`_......`	3	85
MIMAT0021784	aca-miR-150-5p	7	`_......`	2	85
MIMAT0021630	gma-miR408b-5p	1	`......_`	6	85
MIMAT0021233	mtr-miR5239	1	`_......`	6	85
MIMAT0020638	mmu-miR-5127	7	`_......`	2	85
MIMAT0020180	dme-miR-4960-3p	1	`......_`	6	85
MIMAT0019849	hsa-miR-4728-5p	1	`_......`	6	85
MIMAT0019820	hsa-miR-4713-5p	8	`_......`	3	85
MIMAT0018479	csi-miR482a-5p	3	`_......`	8	85
MIMAT0018608	ame-miR-3739	2	`_......`	7	85
MIMAT0018036	vvi-miR3632-3p	8	`......_`	3	85
MIMAT0016868	hsa-miR-4314	3	`......_`	8	85
MIMAT0016853	hsa-miR-4300	1	`_......`	6	85
MIMAT0016852	hsa-miR-4298	1	`......_`	6	85
MIMAT0016328	ahy-miR408-5p	1	`......_`	6	85
MIMAT0016214	ppy-miR-1292	1	`_......`	6	85
MIMAT0015988	ppy-miR-532-3p	7	`_......`	2	85
MIMAT0015774	ppy-miR-150	7	`_......`	2	85
MIMAT0015646	mmu-miR-3474	3	`......_`	8	85
MIMAT0017721	aly-miR3444a-5p	2	`_......`	7	85
MIMAT0015382	bmo-miR-3204a-3p	3	`_......`	8	85
MIMAT0019209	hsa-miR-3156-3p	6	`_......`	1	85
MIMAT0014902	mmu-miR-3090-3p	6	`......_`	1	85
MIMAT0014344	ghr-miR2948-5p	3	`_......`	8	85
MIMAT0015361	zma-miR482-5p	1	`_......`	6	85
MIMAT0013958	ssc-miR-769-3p	1	`......_`	6	85
MIMAT0013941	ssc-miR-532-3p	7	`_......`	2	85
MIMAT0013855	bta-miR-2897	3	`_......`	8	85
MIMAT0013236	eca-miR-532-3p	7	`_......`	2	85
MIMAT0013199	eca-miR-188-3p	6	`_......`	1	85
MIMAT0013016	eca-miR-769a-3p	1	`......_`	6	85
MIMAT0013011	eca-miR-150	7	`_......`	2	85
MIMAT0012748	mdo-miR-150-5p	7	`_......`	2	85
MIMAT0012522	dsi-miR-2494-3p	6	`......_`	1	85
MIMAT0011794	bta-miR-2287	1	`......_`	6	85
MIMAT0011691	ppc-miR-2240c	6	`......_`	1	85
MIMAT0011689	ppc-miR-2240b	6	`......_`	1	85
MIMAT0011206	gga-miR-2130	6	`......_`	1	85
MIMAT0010202	hsv2-miR-H3	3	`_......`	8	85
MIMAT0011161	hsa-miR-2116-3p	7	`_......`	2	85
MIMAT0010013	bfl-miR-705	3	`_......`	8	85
MIMAT0009814	nve-miR-2045-5p	6	`......_`	1	85
MIMAT0009459	mmu-miR-1982-5p	2	`_......`	7	85
MIMAT0009426	mmu-miR-1955-5p	8	`......_`	3	85
MIMAT0008400	hsv1-miR-H3-3p	1	`......_`	6	85
MIMAT0008213	ptr-miR-532	7	`_......`	2	85
MIMAT0008044	ptr-miR-150	7	`_......`	2	85
MIMAT0006602	cfa-miR-150	7	`_......`	2	85
MIMAT0006404	mml-miR-532-3p	7	`_......`	2	85
MIMAT0026843	mml-miR-204-3p	3	`......_`	8	85
MIMAT0006211	mml-miR-150-5p	7	`_......`	2	85
MIMAT0031117	mml-miR-30c-2-3p	1	`_......`	6	85
MIMAT0026805	mml-miR-30c-1-3p	1	`_......`	6	85
MIMAT0007622	gga-miR-1723	1	`_......`	6	85
MIMAT0007525	gga-miR-1648-3p	1	`_......`	6	85
MIMAT0007186	oan-miR-1391-3p	6	`_......`	1	85
MIMAT0007090	oan-miR-150-5p	7	`_......`	2	85
MIMAT0006873	oan-miR-1342	3	`......_`	8	85
MIMAT0022943	hsa-miR-1233-5p	3	`_......`	8	85
MIMAT0005323	rno-miR-532-3p	7	`_......`	2	85
MIMAT0017297	rno-miR-188-3p	6	`_......`	1	85
MIMAT0005028	dme-miR-1015-3p	3	`......_`	8	85
MIMAT0004961	ppt-miR900-5p	6	`......_`	1	85
MIMAT0026720	hsa-miR-887-5p	3	`_......`	8	85
MIMAT0004250	ath-miR832-5p	3	`......_`	8	85
MIMAT0003845	bta-miR-150	7	`_......`	2	85
MIMAT0003606	xtr-miR-150	7	`_......`	2	85
MIMAT0003766	dre-miR-735-3p	8	`_......`	3	85
MIMAT0003495	mmu-miR-705	3	`_......`	8	85
MIMAT0003887	hsa-miR-769-3p	1	`......_`	6	85
MIMAT0004781	mmu-miR-532-3p	7	`_......`	2	85
MIMAT0004780	hsa-miR-532-3p	7	`_......`	2	85
MIMAT0001846	dre-miR-150	7	`_......`	2	85
MIMAT0031924	dre-miR-204-3p	3	`......_`	8	85
MIMAT0031105	gga-miR-30c-1-3p	1	`_......`	6	85
MIMAT0026515	gga-miR-30c-2-3p	1	`_......`	6	85
MIMAT0000853	rno-miR-150-5p	7	`_......`	2	85
MIMAT0004721	rno-miR-30b-3p	1	`......_`	6	85
MIMAT0004613	hsa-miR-188-3p	6	`_......`	1	85
MIMAT0000451	hsa-miR-150-5p	7	`_......`	2	85
MIMAT0004541	mmu-miR-188-3p	6	`_......`	1	85
MIMAT0000160	mmu-miR-150-5p	7	`_......`	2	85
MIMAT0004524	mmu-miR-30b-3p	1	`......_`	6	85