| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | ctgggtat | 8 | ||
| MIMAT0014354 | cqu-miR-1174 | 1 | ........ | 8 | 100 |
| MIMAT0002185 | kshv-miR-K12-9-3p | 1 | ........ | 8 | 100 |
| MIMAT0034708 | eca-miR-8908g | 7 | ......._ | 1 | 87 |
| MIMAT0034702 | eca-miR-8908e | 7 | ......._ | 1 | 87 |
| MIMAT0034694 | eca-miR-8908k | 7 | ......._ | 1 | 87 |
| MIMAT0034398 | cfa-miR-8891 | 7 | ......._ | 1 | 87 |
| MIMAT0033416 | str-miR-8380-5p | 1 | _....... | 7 | 87 |
| MIMAT0030578 | prd-miR-61-5p | 2 | _....... | 8 | 87 |
| MIMAT0027623 | hsa-miR-6861-5p | 2 | ......._ | 8 | 87 |
| MIMAT0024785 | hbr-miR6167 | 7 | ......._ | 1 | 87 |
| MIMAT0022302 | hsa-miR-5591-3p | 7 | _....... | 1 | 87 |
| MIMAT0020143 | cel-miR-4937 | 1 | ......._ | 7 | 87 |
| MIMAT0016655 | cin-miR-4083-5p | 2 | _....... | 8 | 87 |
| MIMAT0016240 | ppy-miR-1912 | 7 | ......._ | 1 | 87 |
| MIMAT0017745 | esi-miR3454g-5p | 7 | ......._ | 1 | 87 |
| MIMAT0014995 | hsa-miR-3130-5p | 7 | ......._ | 1 | 87 |
| MIMAT0013201 | eca-miR-1912 | 7 | ......._ | 1 | 87 |
| MIMAT0013608 | bmo-miR-279b-5p | 2 | _....... | 8 | 87 |
| MIMAT0013554 | cte-miR-2720-5p | 1 | ......._ | 7 | 87 |
| MIMAT0012427 | dsi-miR-1003-5p | 2 | _....... | 8 | 87 |
| MIMAT0007887 | hsa-miR-1912 | 7 | ......._ | 1 | 87 |
| MIMAT0005775 | ptr-miR-510 | 7 | ......._ | 1 | 87 |
| MIMAT0020902 | dme-miR-1003-5p | 1 | _....... | 7 | 87 |
| MIMAT0030931 | stu-miR8008b | 8 | ......t. | 1 | 87 |
| MIMAT0028744 | mdo-miR-1544b-5p | 8 | ......g. | 1 | 87 |
| MIMAT0011212 | mmu-miR-2136 | 1 | ......g. | 8 | 87 |
| MIMAT0004090 | mdo-miR-10b-5p | 8 | .a...... | 1 | 87 |
| MIMAT0036802 | oha-miR-1c-3p | 3 | _......_ | 8 | 75 |
| MIMAT0036708 | oha-miR-137-5p | 3 | __...... | 8 | 75 |
| MIMAT0036284 | chi-miR-660 | 6 | _......_ | 1 | 75 |
| MIMAT0035154 | efu-miR-660 | 6 | _......_ | 1 | 75 |
| MIMAT0034503 | eca-miR-8968 | 2 | ......__ | 7 | 75 |
| MIMAT0034459 | eca-miR-8931 | 2 | ......__ | 7 | 75 |
| MIMAT0034411 | cfa-miR-8901 | 8 | ......__ | 3 | 75 |
| MIMAT0034385 | cfa-miR-8883 | 2 | ......__ | 7 | 75 |
| MIMAT0034369 | cfa-miR-8872 | 3 | ......__ | 8 | 75 |
| MIMAT0032950 | ppc-miR-2235c-5p | 8 | ......__ | 3 | 75 |
| MIMAT0032678 | ssa-miR-729-3p | 3 | _......_ | 8 | 75 |
| MIMAT0032350 | ssa-miR-137-5p | 3 | __...... | 8 | 75 |
| MIMAT0031189 | stu-miR7999-5p | 1 | ......__ | 6 | 75 |
| MIMAT0028739 | mdo-miR-7363-3p | 7 | _......_ | 2 | 75 |
| MIMAT0028631 | mdo-miR-7315-3p | 6 | ......__ | 1 | 75 |
| MIMAT0028552 | mdo-miR-137b-5p | 3 | __...... | 8 | 75 |
| MIMAT0028394 | mmu-miR-7213-5p | 2 | ......__ | 7 | 75 |
| MIMAT0028237 | mml-miR-500b-3p | 8 | ......__ | 3 | 75 |
| MIMAT0026385 | bma-miR-5882a | 1 | _......_ | 6 | 75 |
| MIMAT0026316 | ccr-miR-729 | 3 | _......_ | 8 | 75 |
| MIMAT0028037 | mmu-miR-7066-3p | 8 | _......_ | 3 | 75 |
| MIMAT0027452 | hsa-miR-6776-5p | 2 | ......__ | 7 | 75 |
| MIMAT0027386 | hsa-miR-6742-3p | 3 | ......__ | 8 | 75 |
| MIMAT0027373 | hsa-miR-6736-5p | 1 | ......__ | 6 | 75 |
| MIMAT0024164 | ggo-miR-660 | 6 | _......_ | 1 | 75 |
| MIMAT0024058 | ptr-miR-3132 | 1 | _......_ | 6 | 75 |
| MIMAT0023762 | cgr-miR-137-5p | 3 | __...... | 8 | 75 |
| MIMAT0032133 | sly-miR6027-5p | 2 | _......_ | 7 | 75 |
| MIMAT0023539 | ame-miR-6000a-5p | 3 | _......_ | 8 | 75 |
| MIMAT0023172 | gma-miR4416c | 1 | ......__ | 6 | 75 |
| MIMAT0022662 | ola-miR-729 | 3 | _......_ | 8 | 75 |
| MIMAT0023060 | tur-miR-317-5p | 1 | _......_ | 6 | 75 |
| MIMAT0022297 | hsa-miR-5589-5p | 3 | ......__ | 8 | 75 |
| MIMAT0022293 | hsa-miR-1295b-5p | 7 | ......__ | 2 | 75 |
| MIMAT0021755 | aca-miR-137b-5p | 3 | __...... | 8 | 75 |
| MIMAT0021568 | asu-miR-5354-5p | 3 | __...... | 8 | 75 |
| MIMAT0020169 | dme-miR-4954-5p | 6 | __...... | 1 | 75 |
| MIMAT0019846 | hsa-miR-4726-3p | 6 | ......__ | 1 | 75 |
| MIMAT0019468 | pma-miR-137-2-5p | 3 | __...... | 8 | 75 |
| MIMAT0019044 | hsa-miR-4507 | 1 | ......__ | 6 | 75 |
| MIMAT0019016 | hsa-miR-4482-5p | 7 | ......__ | 2 | 75 |
| MIMAT0018745 | tca-miR-3848-3p | 7 | _......_ | 2 | 75 |
| MIMAT0017977 | ssc-miR-4337 | 2 | __...... | 7 | 75 |
| MIMAT0027032 | hsa-miR-500b-3p | 8 | ......__ | 3 | 75 |
| MIMAT0016342 | ahy-miR3516 | 2 | ......__ | 7 | 75 |
| MIMAT0016160 | ppy-miR-1225-5p | 2 | _......_ | 7 | 75 |
| MIMAT0016092 | ppy-miR-660 | 6 | _......_ | 1 | 75 |
| MIMAT0017696 | aly-miR869-3p | 2 | ......__ | 7 | 75 |
| MIMAT0017596 | aly-miR774a-3p.1 | 6 | _......_ | 1 | 75 |
| MIMAT0014997 | hsa-miR-3132 | 1 | _......_ | 6 | 75 |
| MIMAT0014901 | mmu-miR-3090-5p | 3 | ......__ | 8 | 75 |
| MIMAT0014675 | hma-miR-3007-3p | 1 | _......_ | 6 | 75 |
| MIMAT0026995 | tgu-miR-137-5p | 3 | __...... | 8 | 75 |
| MIMAT0013241 | eca-miR-660 | 6 | _......_ | 1 | 75 |
| MIMAT0013302 | mtr-miR2599 | 1 | _......_ | 6 | 75 |
| MIMAT0012506 | dsi-miR-1001-5p | 1 | _......_ | 6 | 75 |
| MIMAT0012425 | dsi-miR-1012-5p | 2 | _......_ | 7 | 75 |
| MIMAT0012000 | bta-miR-2430 | 2 | ......__ | 7 | 75 |
| MIMAT0011991 | bta-miR-320b | 3 | ......__ | 8 | 75 |
| MIMAT0010001 | bfl-miR-2073 | 3 | ......__ | 8 | 75 |
| MIMAT0009698 | aqu-miR-2020-5p | 1 | _......_ | 6 | 75 |
| MIMAT0008308 | ptr-miR-660 | 6 | _......_ | 1 | 75 |
| MIMAT0006760 | cfa-miR-660 | 6 | _......_ | 1 | 75 |
| MIMAT0006499 | mml-miR-660-5p | 6 | _......_ | 1 | 75 |
| MIMAT0026889 | mml-miR-501-3p | 8 | ......__ | 3 | 75 |
| MIMAT0026821 | mml-miR-137-5p | 3 | __...... | 8 | 75 |
| MIMAT0026753 | oan-miR-137b-5p | 3 | __...... | 8 | 75 |
| MIMAT0006837 | oan-miR-137a-5p | 3 | __...... | 8 | 75 |
| MIMAT0022942 | hsa-miR-1229-5p | 2 | _......_ | 7 | 75 |
| MIMAT0005574 | mml-miR-1225-5p | 2 | _......_ | 7 | 75 |
| MIMAT0005572 | hsa-miR-1225-5p | 2 | _......_ | 7 | 75 |
| MIMAT0017326 | mmu-miR-1b-3p | 1 | _......_ | 6 | 75 |
| MIMAT0005435 | cre-miR1144b | 1 | _......_ | 6 | 75 |
| MIMAT0020906 | dme-miR-1012-5p | 1 | _......_ | 6 | 75 |
| MIMAT0005521 | dme-miR-1001-5p | 1 | _......_ | 6 | 75 |
| MIMAT0005465 | dme-miR-954-5p | 2 | ......__ | 7 | 75 |
| MIMAT0004344 | bta-miR-660 | 6 | _......_ | 1 | 75 |
| MIMAT0003758 | dre-miR-729 | 3 | _......_ | 8 | 75 |
| MIMAT0003338 | hsa-miR-660-5p | 6 | _......_ | 1 | 75 |
| MIMAT0022925 | hsa-miR-503-3p | 2 | __...... | 7 | 75 |
| MIMAT0002184 | kshv-miR-K12-9-5p | 6 | ......__ | 1 | 75 |
| MIMAT0031972 | dre-miR-137-5p | 3 | __...... | 8 | 75 |
| MIMAT0026523 | gga-miR-137-5p | 3 | __...... | 8 | 75 |
| MIMAT0017126 | rno-miR-137-5p | 3 | __...... | 8 | 75 |
| MIMAT0016986 | mmu-miR-137-5p | 3 | __...... | 8 | 75 |
