| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | ctggtgtt | 8 | ||
| MIMAT0035592 | dvi-miR-971-3p | 2 | _....... | 8 | 87 |
| MIMAT0034986 | efu-miR-9312 | 7 | _....... | 1 | 87 |
| MIMAT0034876 | efu-miR-9257 | 2 | _....... | 8 | 87 |
| MIMAT0034477 | eca-miR-8948 | 1 | _....... | 7 | 87 |
| MIMAT0031181 | hsa-miR-7978 | 2 | ......._ | 8 | 87 |
| MIMAT0028648 | mdo-miR-7324-5p | 8 | _....... | 2 | 87 |
| MIMAT0024998 | hme-miR-971 | 2 | _....... | 8 | 87 |
| MIMAT0021212 | mtr-miR5228 | 2 | ......._ | 8 | 87 |
| MIMAT0020519 | ath-miR5015 | 2 | _....... | 8 | 87 |
| MIMAT0019877 | hsa-miR-3591-3p | 8 | _....... | 2 | 87 |
| MIMAT0018544 | ame-miR-971 | 2 | _....... | 8 | 87 |
| MIMAT0017893 | rno-miR-3591 | 7 | _....... | 1 | 87 |
| MIMAT0014745 | api-miR-971 | 2 | _....... | 8 | 87 |
| MIMAT0012226 | dps-miR-971-3p | 2 | _....... | 8 | 87 |
| MIMAT0005487 | dme-miR-971-3p | 2 | _....... | 8 | 87 |
| MIMAT0004321 | ath-miR869.2 | 2 | ......._ | 8 | 87 |
| MIMAT0026573 | mml-miR-21-3p | 8 | _....... | 2 | 87 |
| MIMAT0002180 | kshv-miR-K12-10b | 1 | _....... | 7 | 87 |
| MIMAT0004494 | hsa-miR-21-3p | 8 | _....... | 2 | 87 |
| MIMAT0034952 | efu-miR-9292 | 8 | ......c. | 1 | 87 |
| MIMAT0034679 | eca-miR-9128 | 1 | ......c. | 8 | 87 |
| MIMAT0022122 | osa-miR5489 | 1 | .a...... | 8 | 87 |
| MIMAT0021104 | osa-miR5154 | 8 | ......c. | 1 | 87 |
| MIMAT0018730 | tca-miR-279c-5p | 1 | .g...... | 8 | 87 |
| MIMAT0037215 | ata-miR1432-3p | 2 | _......_ | 7 | 75 |
| MIMAT0036710 | oha-miR-138-5p | 3 | ......__ | 8 | 75 |
| MIMAT0035345 | gsa-miR-9399-3p | 1 | _......_ | 6 | 75 |
| MIMAT0035063 | efu-miR-138a | 3 | ......__ | 8 | 75 |
| MIMAT0035034 | efu-miR-138b | 3 | ......__ | 8 | 75 |
| MIMAT0034704 | eca-miR-1911 | 6 | ......__ | 1 | 75 |
| MIMAT0034532 | eca-miR-8986b | 1 | _......_ | 6 | 75 |
| MIMAT0034526 | eca-miR-8989 | 1 | ......__ | 6 | 75 |
| MIMAT0034232 | gra-miR8782 | 3 | _......_ | 8 | 75 |
| MIMAT0033170 | ppc-miR-8316-3p | 2 | _......_ | 7 | 75 |
| MIMAT0032352 | ssa-miR-138-5p | 3 | ......__ | 8 | 75 |
| MIMAT0031861 | lus-miR398f | 1 | __...... | 6 | 75 |
| MIMAT0031694 | bbe-miR-4868c-3p | 1 | ......__ | 6 | 75 |
| MIMAT0031624 | bbe-miR-2062-3p | 2 | ......__ | 7 | 75 |
| MIMAT0031620 | bbe-miR-2060b-3p | 7 | ......__ | 2 | 75 |
| MIMAT0031535 | ppe-miR3627-3p | 1 | _......_ | 6 | 75 |
| MIMAT0030563 | prd-miR-7911c-3p | 3 | _......_ | 8 | 75 |
| MIMAT0029414 | ipu-miR-138 | 3 | ......__ | 8 | 75 |
| MIMAT0029035 | gga-miR-7440-3p | 3 | _......_ | 8 | 75 |
| MIMAT0028759 | mdo-miR-7368-3p | 6 | ......__ | 1 | 75 |
| MIMAT0026218 | ccr-miR-138 | 3 | ......__ | 8 | 75 |
| MIMAT0028040 | mmu-miR-6769b-5p | 2 | ......__ | 7 | 75 |
| MIMAT0028006 | mmu-miR-7051-5p | 7 | ......__ | 2 | 75 |
| MIMAT0027767 | mmu-miR-6933-3p | 2 | __...... | 7 | 75 |
| MIMAT0027406 | hsa-miR-6753-5p | 6 | ......__ | 1 | 75 |
| MIMAT0025812 | gga-miR-6702-5p | 6 | ......__ | 1 | 75 |
| MIMAT0025743 | gga-miR-6646-3p | 2 | ......__ | 7 | 75 |
| MIMAT0025363 | ssc-miR-138 | 3 | ......__ | 8 | 75 |
| MIMAT0027330 | ppe-miR6294 | 1 | _......_ | 6 | 75 |
| MIMAT0024301 | ggo-miR-609 | 3 | __...... | 8 | 75 |
| MIMAT0024098 | ggo-miR-138 | 3 | ......__ | 8 | 75 |
| MIMAT0023764 | cgr-miR-138 | 3 | ......__ | 8 | 75 |
| MIMAT0022771 | sha-miR-138 | 3 | ......__ | 8 | 75 |
| MIMAT0022554 | ola-miR-138 | 3 | ......__ | 8 | 75 |
| MIMAT0022165 | osa-miR5530 | 3 | _......_ | 8 | 75 |
| MIMAT0021757 | aca-miR-138-5p | 3 | ......__ | 8 | 75 |
| MIMAT0021570 | asu-miR-5355-5p | 8 | __...... | 3 | 75 |
| MIMAT0020651 | rgl-miR5140 | 2 | ......__ | 7 | 75 |
| MIMAT0021005 | gma-miR1507c-5p | 3 | __...... | 8 | 75 |
| MIMAT0020189 | dme-miR-4965-3p | 8 | _......_ | 3 | 75 |
| MIMAT0020161 | dme-miR-4949-3p | 3 | _......_ | 8 | 75 |
| MIMAT0020106 | bfl-miR-4868c-5p | 1 | ......__ | 6 | 75 |
| MIMAT0019858 | hsa-miR-4733-3p | 7 | ......__ | 2 | 75 |
| MIMAT0019786 | hsa-miR-4694-5p | 2 | __...... | 7 | 75 |
| MIMAT0019470 | pma-miR-138b | 3 | ......__ | 8 | 75 |
| MIMAT0019469 | pma-miR-138a | 3 | ......__ | 8 | 75 |
| MIMAT0018978 | hsa-miR-4456 | 2 | ......__ | 7 | 75 |
| MIMAT0018695 | tca-miR-3832-3p | 6 | _......_ | 1 | 75 |
| MIMAT0018171 | mghv-miR-M1-12-3p | 3 | _......_ | 8 | 75 |
| MIMAT0018568 | ame-miR-3789 | 3 | ......__ | 8 | 75 |
| MIMAT0018010 | vvi-miR2950-3p | 1 | _......_ | 6 | 75 |
| MIMAT0016851 | hsa-miR-4299 | 2 | ......__ | 7 | 75 |
| MIMAT0016805 | cin-miR-4187-5p | 3 | _......_ | 8 | 75 |
| MIMAT0016641 | cin-miR-4076-3p | 1 | __...... | 6 | 75 |
| MIMAT0016614 | cin-miR-4063-5p | 6 | __...... | 1 | 75 |
| MIMAT0017862 | rno-miR-3576 | 8 | _......_ | 3 | 75 |
| MIMAT0017854 | rno-miR-1188-5p | 1 | _......_ | 6 | 75 |
| MIMAT0016162 | ppy-miR-1226 | 7 | ......__ | 2 | 75 |
| MIMAT0015760 | ppy-miR-138 | 3 | ......__ | 8 | 75 |
| MIMAT0014796 | api-miR-3045b | 3 | ......__ | 8 | 75 |
| MIMAT0014515 | tgu-miR-138-5p | 3 | ......__ | 8 | 75 |
| MIMAT0014456 | tgu-miR-2958 | 3 | ......__ | 8 | 75 |
| MIMAT0014434 | cqu-miR-2941-1-5p | 3 | _......_ | 8 | 75 |
| MIMAT0014348 | ghr-miR2950 | 1 | _......_ | 6 | 75 |
| MIMAT0012957 | eca-miR-1905b | 6 | ......__ | 1 | 75 |
| MIMAT0012925 | eca-miR-138 | 3 | ......__ | 8 | 75 |
| MIMAT0012716 | hvt-miR-H5-5p | 2 | ......__ | 7 | 75 |
| MIMAT0013580 | cte-miR-2711 | 2 | _......_ | 7 | 75 |
| MIMAT0012357 | dps-miR-2548-3p | 3 | _......_ | 8 | 75 |
| MIMAT0011163 | hsa-miR-548q | 2 | ......__ | 7 | 75 |
| MIMAT0019169 | bfl-miR-2062-3p | 2 | ......__ | 7 | 75 |
| MIMAT0008272 | ptr-miR-609 | 3 | __...... | 8 | 75 |
| MIMAT0008034 | ptr-miR-138 | 3 | ......__ | 8 | 75 |
| MIMAT0007886 | hsa-miR-1911-3p | 6 | ......__ | 1 | 75 |
| MIMAT0007866 | mmu-miR-1905 | 6 | ......__ | 1 | 75 |
| MIMAT0006654 | cfa-miR-138a | 3 | ......__ | 8 | 75 |
| MIMAT0006646 | cfa-miR-138b | 3 | ......__ | 8 | 75 |
| MIMAT0006644 | cfa-miR-1838 | 7 | ......__ | 2 | 75 |
| MIMAT0006462 | mml-miR-609 | 3 | __...... | 8 | 75 |
| MIMAT0006194 | mml-miR-138-5p | 3 | ......__ | 8 | 75 |
| MIMAT0007535 | gga-miR-1656 | 7 | ......__ | 2 | 75 |
| MIMAT0006140 | mdo-miR-1541 | 1 | _......_ | 6 | 75 |
| MIMAT0007346 | gga-miR-1467-3p | 8 | _......_ | 3 | 75 |
| MIMAT0005977 | osa-miR810b.1 | 8 | __...... | 3 | 75 |
| MIMAT0007216 | oan-miR-138-5p | 3 | ......__ | 8 | 75 |
| MIMAT0005579 | mml-miR-1226 | 7 | ......__ | 2 | 75 |
| MIMAT0005578 | ptr-miR-1226 | 7 | ......__ | 2 | 75 |
| MIMAT0005577 | hsa-miR-1226-3p | 7 | ......__ | 2 | 75 |
| MIMAT0005843 | mmu-miR-1188-5p | 1 | _......_ | 6 | 75 |
| MIMAT0004111 | mdo-miR-138 | 3 | ......__ | 8 | 75 |
| MIMAT0003813 | bta-miR-138 | 3 | ......__ | 8 | 75 |
| MIMAT0003599 | xtr-miR-138 | 3 | ......__ | 8 | 75 |
| MIMAT0003277 | hsa-miR-609 | 3 | __...... | 8 | 75 |
| MIMAT0003080 | tni-miR-138 | 3 | ......__ | 8 | 75 |
| MIMAT0003079 | fru-miR-138 | 3 | ......__ | 8 | 75 |
| MIMAT0001835 | dre-miR-138-5p | 3 | ......__ | 8 | 75 |
| MIMAT0001575 | hcmv-miR-UL22A-3p | 7 | ......__ | 2 | 75 |
| MIMAT0001122 | gga-miR-138-5p | 3 | ......__ | 8 | 75 |
| MIMAT0000844 | rno-miR-138-5p | 3 | ......__ | 8 | 75 |
| MIMAT0000430 | hsa-miR-138-5p | 3 | ......__ | 8 | 75 |
| MIMAT0000150 | mmu-miR-138-5p | 3 | ......__ | 8 | 75 |
