| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | ctgttccc | 8 | ||
| MIMAT0024590 | bta-miR-6120-5p | 1 | ........ | 8 | 100 |
| MIMAT0034591 | eca-miR-9047 | 1 | _....... | 7 | 87 |
| MIMAT0033544 | sma-miR-8420-5p | 8 | _....... | 2 | 87 |
| MIMAT0031696 | bbe-miR-4873-5p | 1 | _....... | 7 | 87 |
| MIMAT0028825 | mdo-miR-7384-3p | 8 | _....... | 2 | 87 |
| MIMAT0026400 | sbi-miR5568c-5p | 2 | ......._ | 8 | 87 |
| MIMAT0024823 | hvu-miR6197 | 2 | ......._ | 8 | 87 |
| MIMAT0020452 | bfl-miR-4873 | 1 | _....... | 7 | 87 |
| MIMAT0016484 | cin-miR-4006g-5p | 7 | _....... | 1 | 87 |
| MIMAT0015395 | bmo-miR-3215 | 2 | ......._ | 8 | 87 |
| MIMAT0037184 | ata-miR395f-5p | 1 | __...... | 6 | 75 |
| MIMAT0037164 | ata-miR395d-5p | 2 | __...... | 7 | 75 |
| MIMAT0037162 | ata-miR395a-5p | 1 | __...... | 6 | 75 |
| MIMAT0037150 | ata-miR395b-5p | 1 | __...... | 6 | 75 |
| MIMAT0037075 | ssc-miR-9856-3p | 1 | _......_ | 6 | 75 |
| MIMAT0037014 | ssc-miR-9796-3p | 8 | __...... | 3 | 75 |
| MIMAT0036104 | chi-miR-26b-3p | 2 | ......__ | 7 | 75 |
| MIMAT0035722 | rno-miR-1247-3p | 7 | __...... | 2 | 75 |
| MIMAT0035623 | dvi-miR-9540-3p | 2 | ......__ | 7 | 75 |
| MIMAT0035593 | dvi-miR-973-3p | 3 | ......__ | 8 | 75 |
| MIMAT0034823 | efu-miR-9223h | 1 | ......__ | 6 | 75 |
| MIMAT0034688 | eca-miR-9137 | 3 | _......_ | 8 | 75 |
| MIMAT0034043 | gra-miR8671 | 3 | ......__ | 8 | 75 |
| MIMAT0033945 | atr-miR398 | 3 | _......_ | 8 | 75 |
| MIMAT0033559 | sma-miR-8427-3p | 6 | _......_ | 1 | 75 |
| MIMAT0032817 | cel-miR-8202-5p | 7 | ......__ | 2 | 75 |
| MIMAT0032809 | cel-miR-8198-5p | 8 | ......__ | 3 | 75 |
| MIMAT0032565 | ssa-miR-26a-3-3p | 2 | ......__ | 7 | 75 |
| MIMAT0031493 | ppe-miR395o | 1 | __...... | 6 | 75 |
| MIMAT0031479 | ppe-miR395b-5p | 1 | __...... | 6 | 75 |
| MIMAT0031477 | ppe-miR395a-5p | 1 | __...... | 6 | 75 |
| MIMAT0030986 | hsa-miR-8059 | 7 | __...... | 2 | 75 |
| MIMAT0030405 | ptc-miR7832 | 3 | __...... | 8 | 75 |
| MIMAT0030309 | bdi-miR7777-3p.1 | 2 | _......_ | 7 | 75 |
| MIMAT0030194 | bdi-miR7730-5p | 7 | ......__ | 2 | 75 |
| MIMAT0029630 | crm-miR-7611 | 8 | __...... | 3 | 75 |
| MIMAT0029054 | gga-miR-7450-5p | 2 | ......__ | 7 | 75 |
| MIMAT0029028 | gga-miR-7437-5p | 6 | ......__ | 1 | 75 |
| MIMAT0031115 | oan-miR-26-2-3p | 2 | ......__ | 7 | 75 |
| MIMAT0028971 | oan-miR-7412-3p | 2 | ......__ | 7 | 75 |
| MIMAT0028949 | oan-miR-7403-3p | 3 | ......__ | 8 | 75 |
| MIMAT0028662 | mdo-miR-505-5p | 8 | __...... | 3 | 75 |
| MIMAT0028359 | mml-miR-1247-3p | 7 | __...... | 2 | 75 |
| MIMAT0028312 | mml-miR-6827-5p | 8 | __...... | 3 | 75 |
| MIMAT0027983 | mmu-miR-7039-3p | 2 | ......__ | 7 | 75 |
| MIMAT0027765 | mmu-miR-6932-3p | 2 | ......__ | 7 | 75 |
| MIMAT0027544 | hsa-miR-6822-5p | 8 | __...... | 3 | 75 |
| MIMAT0027400 | hsa-miR-6750-5p | 8 | __...... | 3 | 75 |
| MIMAT0025787 | gga-miR-6682-3p | 7 | _......_ | 2 | 75 |
| MIMAT0025725 | gga-miR-6629-5p | 8 | __...... | 3 | 75 |
| MIMAT0025550 | bta-miR-1247-3p | 7 | __...... | 2 | 75 |
| MIMAT0025218 | ptc-miR6477 | 7 | ......__ | 2 | 75 |
| MIMAT0024811 | hvu-miR6187 | 7 | ......__ | 2 | 75 |
| MIMAT0023873 | cgr-miR-26b-3p | 2 | ......__ | 7 | 75 |
| MIMAT0023117 | mtr-miR5740 | 7 | ......__ | 2 | 75 |
| MIMAT0021903 | aca-miR-26-1-3p | 2 | ......__ | 7 | 75 |
| MIMAT0021642 | gma-miR159f-5p | 3 | __...... | 8 | 75 |
| MIMAT0021630 | gma-miR408b-5p | 8 | __...... | 3 | 75 |
| MIMAT0021490 | asu-miR-100b-3p | 3 | ......__ | 8 | 75 |
| MIMAT0021399 | rmi-miR-5326 | 8 | ......__ | 3 | 75 |
| MIMAT0021231 | mtr-miR2592bk | 7 | _......_ | 2 | 75 |
| MIMAT0021230 | mtr-miR2592bj | 7 | _......_ | 2 | 75 |
| MIMAT0021229 | mtr-miR2592bi | 7 | _......_ | 2 | 75 |
| MIMAT0027096 | bdi-miR395n-5p | 1 | __...... | 6 | 75 |
| MIMAT0027095 | bdi-miR395l-5p | 1 | __...... | 6 | 75 |
| MIMAT0027094 | bdi-miR395k-5p | 1 | __...... | 6 | 75 |
| MIMAT0027092 | bdi-miR395h-5p | 1 | __...... | 6 | 75 |
| MIMAT0027090 | bdi-miR395f-5p | 1 | __...... | 6 | 75 |
| MIMAT0027074 | bdi-miR395c-5p | 1 | __...... | 6 | 75 |
| MIMAT0022986 | mmu-miR-3572-5p | 8 | __...... | 3 | 75 |
| MIMAT0020563 | bdi-miR5061 | 2 | ......__ | 7 | 75 |
| MIMAT0020502 | bfl-miR-4906 | 1 | _......_ | 6 | 75 |
| MIMAT0019928 | hsa-miR-4773 | 8 | ......__ | 3 | 75 |
| MIMAT0019570 | pma-miR-4542-5p | 3 | _......_ | 8 | 75 |
| MIMAT0018998 | hsa-miR-4471 | 7 | __...... | 2 | 75 |
| MIMAT0022736 | hsa-miR-642b-5p | 2 | __...... | 7 | 75 |
| MIMAT0018634 | tca-miR-3806-5p | 3 | ......__ | 8 | 75 |
| MIMAT0018625 | tca-miR-3804a-3p | 2 | _......_ | 7 | 75 |
| MIMAT0018143 | pab-miR3710 | 7 | __...... | 2 | 75 |
| MIMAT0018042 | vvi-miR3633b-3p | 1 | __...... | 6 | 75 |
| MIMAT0016888 | hsa-miR-4326 | 1 | _......_ | 6 | 75 |
| MIMAT0016530 | cin-miR-4018b-5p | 7 | _......_ | 2 | 75 |
| MIMAT0016528 | cin-miR-4018a-5p | 7 | _......_ | 2 | 75 |
| MIMAT0016482 | cin-miR-4006f-5p | 7 | _......_ | 2 | 75 |
| MIMAT0016480 | cin-miR-4006e-5p | 7 | _......_ | 2 | 75 |
| MIMAT0016478 | cin-miR-4006a-5p | 7 | _......_ | 2 | 75 |
| MIMAT0016476 | cin-miR-4006d-5p | 7 | _......_ | 2 | 75 |
| MIMAT0016474 | cin-miR-4006c-5p | 7 | _......_ | 2 | 75 |
| MIMAT0016472 | cin-miR-4006b-5p | 7 | _......_ | 2 | 75 |
| MIMAT0016449 | cin-miR-4002-3p | 2 | ......__ | 7 | 75 |
| MIMAT0016328 | ahy-miR408-5p | 8 | __...... | 3 | 75 |
| MIMAT0017667 | aly-miR395h-5p | 1 | __...... | 6 | 75 |
| MIMAT0017587 | aly-miR408-5p | 8 | __...... | 3 | 75 |
| MIMAT0017555 | aly-miR395f-5p | 1 | __...... | 6 | 75 |
| MIMAT0017549 | aly-miR395c-5p | 1 | __...... | 6 | 75 |
| MIMAT0017547 | aly-miR395b-5p | 1 | __...... | 6 | 75 |
| MIMAT0015425 | bmo-miR-3243 | 7 | _......_ | 2 | 75 |
| MIMAT0014919 | mmu-miR-3100-5p | 8 | __...... | 3 | 75 |
| MIMAT0014659 | bmo-miR-2998 | 8 | ......__ | 3 | 75 |
| MIMAT0015348 | zma-miR395p-5p | 1 | __...... | 6 | 75 |
| MIMAT0015342 | zma-miR395j-5p | 1 | __...... | 6 | 75 |
| MIMAT0015341 | zma-miR395i-5p | 1 | __...... | 6 | 75 |
| MIMAT0015340 | zma-miR395h-5p | 1 | __...... | 6 | 75 |
| MIMAT0015337 | zma-miR395e-5p | 1 | __...... | 6 | 75 |
| MIMAT0017380 | ssc-miR-450b-3p | 8 | __...... | 3 | 75 |
| MIMAT0013221 | eca-miR-450b-3p | 8 | __...... | 3 | 75 |
| MIMAT0012868 | hvt-miR-H15-5p | 8 | _......_ | 3 | 75 |
| MIMAT0017364 | rno-miR-201-3p | 7 | ......__ | 2 | 75 |
| MIMAT0026929 | mdo-miR-26-2-3p | 2 | ......__ | 7 | 75 |
| MIMAT0032053 | dvi-miR-6-2-5p | 7 | __...... | 2 | 75 |
| MIMAT0015283 | dsi-miR-6-5p | 7 | __...... | 2 | 75 |
| MIMAT0008011 | ptr-miR-1292 | 7 | __...... | 2 | 75 |
| MIMAT0026913 | mml-miR-890-3p | 3 | ......__ | 8 | 75 |
| MIMAT0026801 | mml-miR-26b-3p | 2 | ......__ | 7 | 75 |
| MIMAT0020934 | gma-miR159b-5p | 3 | __...... | 8 | 75 |
| MIMAT0007226 | oan-miR-1409-5p | 8 | __...... | 3 | 75 |
| MIMAT0006951 | oan-miR-1355-5p | 1 | _......_ | 6 | 75 |
| MIMAT0005943 | hsa-miR-1292-5p | 7 | __...... | 2 | 75 |
| MIMAT0026742 | hsa-miR-1266-3p | 3 | ......__ | 8 | 75 |
| MIMAT0020870 | dme-miR-973-3p | 2 | ......__ | 7 | 75 |
| MIMAT0005000 | pta-miR398 | 3 | _......_ | 8 | 75 |
| MIMAT0012087 | sme-let-7a-3p | 2 | ......__ | 7 | 75 |
| MIMAT0014801 | mmu-miR-1247-3p | 7 | __...... | 2 | 75 |
| MIMAT0022913 | ptc-miR408-5p | 8 | __...... | 3 | 75 |
| MIMAT0015165 | zma-miR395c-5p | 1 | __...... | 6 | 75 |
| MIMAT0015164 | zma-miR395b-5p | 1 | __...... | 6 | 75 |
| MIMAT0026490 | gga-miR-33-3p | 3 | _......_ | 8 | 75 |
| MIMAT0004714 | rno-miR-26b-3p | 2 | ......__ | 7 | 75 |
| MIMAT0017058 | mmu-miR-26a-2-3p | 2 | ......__ | 7 | 75 |
| MIMAT0004630 | mmu-miR-26b-3p | 2 | ......__ | 7 | 75 |
| MIMAT0017001 | mmu-miR-201-3p | 7 | ......__ | 2 | 75 |
| MIMAT0020789 | dme-miR-6-3-5p | 7 | __...... | 2 | 75 |
| MIMAT0020788 | dme-miR-6-2-5p | 7 | __...... | 2 | 75 |
| MIMAT0004500 | hsa-miR-26b-3p | 2 | ......__ | 7 | 75 |
