| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | ctgttgc | 7 | ||
| MIMAT0036324 | ocu-miR-367-5p | 2 | ....... | 8 | 100 |
| MIMAT0034953 | efu-miR-9293 | 7 | ....... | 1 | 100 |
| MIMAT0034809 | efu-miR-9217 | 2 | ....... | 8 | 100 |
| MIMAT0031631 | bbe-miR-2067-5p | 2 | ....... | 8 | 100 |
| MIMAT0030570 | prd-miR-7893-5p | 1 | ....... | 7 | 100 |
| MIMAT0028675 | mdo-miR-7333-3p | 2 | ....... | 8 | 100 |
| MIMAT0024003 | cgr-miR-744-3p | 1 | ....... | 7 | 100 |
| MIMAT0016451 | cin-miR-4001c-3p | 2 | ....... | 8 | 100 |
| MIMAT0009859 | cfa-miR-367 | 2 | ....... | 8 | 100 |
| MIMAT0004946 | hsa-miR-744-3p | 1 | ....... | 7 | 100 |
| MIMAT0004820 | mmu-miR-744-3p | 1 | ....... | 7 | 100 |
| MIMAT0017214 | mmu-miR-367-5p | 2 | ....... | 8 | 100 |
| MIMAT0004686 | hsa-miR-367-5p | 2 | ....... | 8 | 100 |
| MIMAT0036825 | oha-miR-21-3p | 8 | ......_ | 3 | 85 |
| MIMAT0036219 | chi-miR-421-3p | 8 | ......_ | 3 | 85 |
| MIMAT0036062 | chi-miR-21-3p | 6 | ......_ | 1 | 85 |
| MIMAT0035657 | bra-miR9408-5p | 6 | ......_ | 1 | 85 |
| MIMAT0035146 | efu-miR-21 | 6 | ......_ | 1 | 85 |
| MIMAT0034767 | efu-miR-9187 | 1 | _...... | 6 | 85 |
| MIMAT0034624 | eca-miR-9079 | 1 | _...... | 6 | 85 |
| MIMAT0034590 | eca-miR-9046 | 3 | ......_ | 8 | 85 |
| MIMAT0034407 | cfa-miR-8799g | 3 | ......_ | 8 | 85 |
| MIMAT0034372 | cfa-miR-8799f | 3 | ......_ | 8 | 85 |
| MIMAT0034371 | cfa-miR-8799e | 3 | ......_ | 8 | 85 |
| MIMAT0034341 | cfa-miR-8799d | 3 | ......_ | 8 | 85 |
| MIMAT0034318 | cfa-miR-8799c | 3 | ......_ | 8 | 85 |
| MIMAT0034316 | cfa-miR-8799b | 3 | ......_ | 8 | 85 |
| MIMAT0034289 | cfa-miR-8799a | 3 | ......_ | 8 | 85 |
| MIMAT0033840 | atr-miR8564 | 3 | ......_ | 8 | 85 |
| MIMAT0033815 | pxy-miR-8546 | 3 | ......_ | 8 | 85 |
| MIMAT0033606 | sma-miR-8448-5p | 6 | _...... | 1 | 85 |
| MIMAT0032456 | ssa-miR-196a-3-3p | 8 | _...... | 3 | 85 |
| MIMAT0031640 | bbe-miR-2072-5p | 7 | _...... | 2 | 85 |
| MIMAT0031623 | bbe-miR-2062-5p | 7 | _...... | 2 | 85 |
| MIMAT0031294 | stu-miR172e-5p | 6 | _...... | 1 | 85 |
| MIMAT0030963 | stu-miR6149-5p | 8 | _...... | 3 | 85 |
| MIMAT0032237 | lva-miR-4854-3p | 1 | _...... | 6 | 85 |
| MIMAT0031140 | aja-miR-21 | 6 | ......_ | 1 | 85 |
| MIMAT0029131 | ghr-miR7489 | 3 | _...... | 8 | 85 |
| MIMAT0029051 | gga-miR-7448-3p | 3 | ......_ | 8 | 85 |
| MIMAT0028872 | mdo-miR-7388b-5p | 1 | _...... | 6 | 85 |
| MIMAT0028539 | mdo-miR-7282-3p | 2 | _...... | 7 | 85 |
| MIMAT0028172 | dev-miR-D3-3p | 3 | _...... | 8 | 85 |
| MIMAT0027865 | mmu-miR-6981-3p | 6 | ......_ | 1 | 85 |
| MIMAT0025627 | gga-miR-6560-5p | 3 | _...... | 8 | 85 |
| MIMAT0025601 | gga-miR-6548-5p | 8 | ......_ | 3 | 85 |
| MIMAT0024981 | hme-miR-3327 | 8 | ......_ | 3 | 85 |
| MIMAT0024168 | ggo-miR-421 | 8 | ......_ | 3 | 85 |
| MIMAT0023459 | hco-miR-5956 | 1 | _...... | 6 | 85 |
| MIMAT0023301 | osa-miR5827 | 3 | _...... | 8 | 85 |
| MIMAT0021169 | mtr-miR2592am | 6 | ......_ | 1 | 85 |
| MIMAT0021168 | mtr-miR2592al | 6 | ......_ | 1 | 85 |
| MIMAT0021166 | mtr-miR2592aj | 6 | ......_ | 1 | 85 |
| MIMAT0021165 | mtr-miR2592ai | 6 | ......_ | 1 | 85 |
| MIMAT0021164 | mtr-miR2592ah | 6 | ......_ | 1 | 85 |
| MIMAT0021162 | mtr-miR2592af | 6 | ......_ | 1 | 85 |
| MIMAT0021161 | mtr-miR2592ae | 6 | ......_ | 1 | 85 |
| MIMAT0021160 | mtr-miR2592ad | 6 | ......_ | 1 | 85 |
| MIMAT0021159 | mtr-miR2592ac | 6 | ......_ | 1 | 85 |
| MIMAT0021158 | mtr-miR2592ab | 6 | ......_ | 1 | 85 |
| MIMAT0021156 | mtr-miR2592z | 6 | ......_ | 1 | 85 |
| MIMAT0021155 | mtr-miR2592y | 6 | ......_ | 1 | 85 |
| MIMAT0021154 | mtr-miR2592x | 6 | ......_ | 1 | 85 |
| MIMAT0021153 | mtr-miR2592w | 6 | ......_ | 1 | 85 |
| MIMAT0021152 | mtr-miR2592v | 6 | ......_ | 1 | 85 |
| MIMAT0021151 | mtr-miR2592u | 6 | ......_ | 1 | 85 |
| MIMAT0021149 | mtr-miR2592t | 6 | ......_ | 1 | 85 |
| MIMAT0020225 | dme-miR-4987-5p | 8 | _...... | 3 | 85 |
| MIMAT0020202 | dme-miR-4973-3p | 7 | _...... | 2 | 85 |
| MIMAT0032118 | dme-miR-4968-3p | 8 | _...... | 3 | 85 |
| MIMAT0020077 | spu-miR-4854 | 1 | _...... | 6 | 85 |
| MIMAT0019770 | hsa-miR-4684-3p | 1 | _...... | 6 | 85 |
| MIMAT0020954 | gma-miR4412-5p | 1 | _...... | 6 | 85 |
| MIMAT0018247 | gma-miR4355 | 3 | ......_ | 8 | 85 |
| MIMAT0018050 | vvi-miR3638-3p | 6 | _...... | 1 | 85 |
| MIMAT0022962 | ssc-miR-421-3p | 8 | ......_ | 3 | 85 |
| MIMAT0016768 | cin-miR-4162-5p | 1 | ......_ | 6 | 85 |
| MIMAT0016673 | cin-miR-4093-3p | 8 | _...... | 3 | 85 |
| MIMAT0015880 | ppy-miR-421 | 8 | ......_ | 3 | 85 |
| MIMAT0017527 | aly-miR172d-5p | 6 | _...... | 1 | 85 |
| MIMAT0015514 | bmo-miR-3327-5p | 8 | ......_ | 3 | 85 |
| MIMAT0014636 | tgu-miR-21-3p | 8 | ......_ | 3 | 85 |
| MIMAT0020944 | mtr-miR2592q-5p | 6 | ......_ | 1 | 85 |
| MIMAT0020943 | mtr-miR2592o-5p | 6 | ......_ | 1 | 85 |
| MIMAT0020942 | mtr-miR2592e-5p | 6 | ......_ | 1 | 85 |
| MIMAT0020941 | mtr-miR2592d-5p | 6 | ......_ | 1 | 85 |
| MIMAT0012198 | dme-miR-2491-5p | 3 | ......_ | 8 | 85 |
| MIMAT0011948 | bta-miR-2395 | 1 | ......_ | 6 | 85 |
| MIMAT0010000 | bfl-miR-2072-5p | 7 | _...... | 2 | 85 |
| MIMAT0009988 | bfl-miR-2062-5p | 7 | _...... | 2 | 85 |
| MIMAT0009762 | nve-miR-2024b-3p | 8 | ......_ | 3 | 85 |
| MIMAT0009314 | bta-miR-421 | 8 | ......_ | 3 | 85 |
| MIMAT0008140 | ptr-miR-421 | 8 | ......_ | 3 | 85 |
| MIMAT0006755 | cfa-miR-421 | 8 | ......_ | 3 | 85 |
| MIMAT0006726 | cfa-miR-409 | 3 | _...... | 8 | 85 |
| MIMAT0006319 | mml-miR-421 | 8 | ......_ | 3 | 85 |
| MIMAT0026839 | mml-miR-196a-3p | 7 | _...... | 2 | 85 |
| MIMAT0007659 | gga-miR-1752 | 3 | ......_ | 8 | 85 |
| MIMAT0007161 | oan-miR-21-3p | 6 | ......_ | 1 | 85 |
| MIMAT0005087 | ppt-miR902l-5p | 3 | _...... | 8 | 85 |
| MIMAT0005085 | ppt-miR902k-5p | 3 | _...... | 8 | 85 |
| MIMAT0020885 | dme-miR-987-3p | 8 | ......_ | 3 | 85 |
| MIMAT0022937 | cgr-miR-21-3p | 6 | ......_ | 1 | 85 |
| MIMAT0004869 | mmu-miR-421-3p | 8 | ......_ | 3 | 85 |
| MIMAT0003339 | hsa-miR-421 | 8 | ......_ | 3 | 85 |
| MIMAT0003205 | rno-miR-409a-3p | 3 | _...... | 8 | 85 |
| MIMAT0006784 | ptc-miR394b-3p | 1 | ......_ | 6 | 85 |
| MIMAT0006783 | ptc-miR394a-3p | 1 | ......_ | 6 | 85 |
| MIMAT0017175 | rno-miR-421-3p | 8 | ......_ | 3 | 85 |
| MIMAT0031901 | ath-miR172d-5p | 6 | _...... | 1 | 85 |
| MIMAT0004711 | rno-miR-21-3p | 6 | ......_ | 1 | 85 |
| MIMAT0004628 | mmu-miR-21a-3p | 6 | ......_ | 1 | 85 |
| MIMAT0004562 | hsa-miR-196a-3p | 8 | _...... | 3 | 85 |
