| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | ctgttgt | 7 | ||
| MIMAT0037025 | ssc-miR-9807-5p | 2 | ....... | 8 | 100 |
| MIMAT0036825 | oha-miR-21-3p | 8 | ....... | 2 | 100 |
| MIMAT0025601 | gga-miR-6548-5p | 8 | ....... | 2 | 100 |
| MIMAT0024981 | hme-miR-3327 | 8 | ....... | 2 | 100 |
| MIMAT0019811 | hsa-miR-4709-5p | 7 | ....... | 1 | 100 |
| MIMAT0016457 | cin-miR-4001f-3p | 2 | ....... | 8 | 100 |
| MIMAT0015514 | bmo-miR-3327-5p | 8 | ....... | 2 | 100 |
| MIMAT0014636 | tgu-miR-21-3p | 8 | ....... | 2 | 100 |
| MIMAT0026925 | mtr-miR2592s-5p | 7 | ....... | 1 | 100 |
| MIMAT0026924 | mtr-miR2592b-5p | 7 | ....... | 1 | 100 |
| MIMAT0007520 | gga-miR-1644 | 2 | ....... | 8 | 100 |
| MIMAT0005803 | mdv1-miR-M6-5p | 2 | ....... | 8 | 100 |
| MIMAT0036948 | oha-miR-7-3-3p | 6 | _...... | 1 | 85 |
| MIMAT0036362 | gma-miR9742 | 3 | _...... | 8 | 85 |
| MIMAT0036219 | chi-miR-421-3p | 8 | ......_ | 3 | 85 |
| MIMAT0036062 | chi-miR-21-3p | 6 | ......_ | 1 | 85 |
| MIMAT0035657 | bra-miR9408-5p | 6 | ......_ | 1 | 85 |
| MIMAT0035146 | efu-miR-21 | 6 | ......_ | 1 | 85 |
| MIMAT0034590 | eca-miR-9046 | 3 | ......_ | 8 | 85 |
| MIMAT0034407 | cfa-miR-8799g | 3 | ......_ | 8 | 85 |
| MIMAT0034372 | cfa-miR-8799f | 3 | ......_ | 8 | 85 |
| MIMAT0034371 | cfa-miR-8799e | 3 | ......_ | 8 | 85 |
| MIMAT0034341 | cfa-miR-8799d | 3 | ......_ | 8 | 85 |
| MIMAT0034318 | cfa-miR-8799c | 3 | ......_ | 8 | 85 |
| MIMAT0034316 | cfa-miR-8799b | 3 | ......_ | 8 | 85 |
| MIMAT0034289 | cfa-miR-8799a | 3 | ......_ | 8 | 85 |
| MIMAT0033840 | atr-miR8564 | 3 | ......_ | 8 | 85 |
| MIMAT0033815 | pxy-miR-8546 | 3 | ......_ | 8 | 85 |
| MIMAT0033215 | ppc-miR-8335-3p | 3 | _...... | 8 | 85 |
| MIMAT0032617 | ssa-miR-338a-4-5p | 7 | _...... | 2 | 85 |
| MIMAT0032537 | ssa-miR-21b-3p | 8 | _...... | 3 | 85 |
| MIMAT0032535 | ssa-miR-21a-2-3p | 8 | _...... | 3 | 85 |
| MIMAT0032455 | ssa-miR-196a-2-3p | 8 | _...... | 3 | 85 |
| MIMAT0031683 | bbe-miR-4863-5p | 8 | _...... | 3 | 85 |
| MIMAT0030570 | prd-miR-7893-5p | 1 | ......_ | 6 | 85 |
| MIMAT0030374 | ptc-miR7816 | 3 | _...... | 8 | 85 |
| MIMAT0030231 | bdi-miR7745-3p | 2 | _...... | 7 | 85 |
| MIMAT0031140 | aja-miR-21 | 6 | ......_ | 1 | 85 |
| MIMAT0029107 | gga-miR-7476-3p | 8 | _...... | 3 | 85 |
| MIMAT0029051 | gga-miR-7448-3p | 3 | ......_ | 8 | 85 |
| MIMAT0027865 | mmu-miR-6981-3p | 6 | ......_ | 1 | 85 |
| MIMAT0027841 | mmu-miR-6969-3p | 1 | _...... | 6 | 85 |
| MIMAT0027411 | hsa-miR-6755-3p | 1 | _...... | 6 | 85 |
| MIMAT0025425 | pol-miR-21-3p | 8 | _...... | 3 | 85 |
| MIMAT0025387 | ssc-miR-3613 | 1 | _...... | 6 | 85 |
| MIMAT0024574 | bta-miR-3613a | 1 | _...... | 6 | 85 |
| MIMAT0024168 | ggo-miR-421 | 8 | ......_ | 3 | 85 |
| MIMAT0024003 | cgr-miR-744-3p | 1 | ......_ | 6 | 85 |
| MIMAT0022579 | ola-miR-338-5p | 7 | _...... | 2 | 85 |
| MIMAT0022076 | aca-miR-5452-3p | 8 | _...... | 3 | 85 |
| MIMAT0021866 | aca-miR-21-3p | 8 | _...... | 3 | 85 |
| MIMAT0021169 | mtr-miR2592am | 6 | ......_ | 1 | 85 |
| MIMAT0021168 | mtr-miR2592al | 6 | ......_ | 1 | 85 |
| MIMAT0021166 | mtr-miR2592aj | 6 | ......_ | 1 | 85 |
| MIMAT0021165 | mtr-miR2592ai | 6 | ......_ | 1 | 85 |
| MIMAT0021164 | mtr-miR2592ah | 6 | ......_ | 1 | 85 |
| MIMAT0021162 | mtr-miR2592af | 6 | ......_ | 1 | 85 |
| MIMAT0021161 | mtr-miR2592ae | 6 | ......_ | 1 | 85 |
| MIMAT0021160 | mtr-miR2592ad | 6 | ......_ | 1 | 85 |
| MIMAT0021159 | mtr-miR2592ac | 6 | ......_ | 1 | 85 |
| MIMAT0021158 | mtr-miR2592ab | 6 | ......_ | 1 | 85 |
| MIMAT0021156 | mtr-miR2592z | 6 | ......_ | 1 | 85 |
| MIMAT0021155 | mtr-miR2592y | 6 | ......_ | 1 | 85 |
| MIMAT0021154 | mtr-miR2592x | 6 | ......_ | 1 | 85 |
| MIMAT0021153 | mtr-miR2592w | 6 | ......_ | 1 | 85 |
| MIMAT0021152 | mtr-miR2592v | 6 | ......_ | 1 | 85 |
| MIMAT0021151 | mtr-miR2592u | 6 | ......_ | 1 | 85 |
| MIMAT0021149 | mtr-miR2592t | 6 | ......_ | 1 | 85 |
| MIMAT0021025 | hsa-miR-5003-5p | 8 | _...... | 3 | 85 |
| MIMAT0020095 | bfl-miR-4863-5p | 8 | _...... | 3 | 85 |
| MIMAT0022741 | hsa-miR-3529-3p | 7 | _...... | 2 | 85 |
| MIMAT0018367 | far-miR1134 | 8 | _...... | 3 | 85 |
| MIMAT0018327 | gma-miR4408 | 8 | _...... | 3 | 85 |
| MIMAT0018322 | gma-miR1520p | 2 | _...... | 7 | 85 |
| MIMAT0018247 | gma-miR4355 | 3 | ......_ | 8 | 85 |
| MIMAT0018234 | gma-miR4364b | 8 | _...... | 3 | 85 |
| MIMAT0017990 | hsa-miR-3613-5p | 1 | _...... | 6 | 85 |
| MIMAT0022962 | ssc-miR-421-3p | 8 | ......_ | 3 | 85 |
| MIMAT0016768 | cin-miR-4162-5p | 1 | ......_ | 6 | 85 |
| MIMAT0016730 | cin-miR-4133-3p | 3 | _...... | 8 | 85 |
| MIMAT0016670 | cin-miR-4092-5p | 3 | _...... | 8 | 85 |
| MIMAT0016356 | gso-miR1510a | 1 | _...... | 6 | 85 |
| MIMAT0016355 | gso-miR1510b | 1 | _...... | 6 | 85 |
| MIMAT0015880 | ppy-miR-421 | 8 | ......_ | 3 | 85 |
| MIMAT0014051 | osa-miR2920 | 8 | _...... | 3 | 85 |
| MIMAT0020944 | mtr-miR2592q-5p | 6 | ......_ | 1 | 85 |
| MIMAT0020943 | mtr-miR2592o-5p | 6 | ......_ | 1 | 85 |
| MIMAT0020942 | mtr-miR2592e-5p | 6 | ......_ | 1 | 85 |
| MIMAT0020941 | mtr-miR2592d-5p | 6 | ......_ | 1 | 85 |
| MIMAT0012291 | dps-miR-2507a | 1 | _...... | 6 | 85 |
| MIMAT0012209 | dme-miR-2497-3p | 6 | _...... | 1 | 85 |
| MIMAT0020912 | dme-miR-2491-3p | 8 | _...... | 3 | 85 |
| MIMAT0012198 | dme-miR-2491-5p | 3 | ......_ | 8 | 85 |
| MIMAT0011948 | bta-miR-2395 | 1 | ......_ | 6 | 85 |
| MIMAT0011680 | ppc-miR-2256 | 1 | _...... | 6 | 85 |
| MIMAT0010082 | gma-miR1510b-3p | 1 | _...... | 6 | 85 |
| MIMAT0009762 | nve-miR-2024b-3p | 8 | ......_ | 3 | 85 |
| MIMAT0009314 | bta-miR-421 | 8 | ......_ | 3 | 85 |
| MIMAT0008140 | ptr-miR-421 | 8 | ......_ | 3 | 85 |
| MIMAT0006755 | cfa-miR-421 | 8 | ......_ | 3 | 85 |
| MIMAT0006319 | mml-miR-421 | 8 | ......_ | 3 | 85 |
| MIMAT0007699 | gga-miR-1787 | 1 | _...... | 6 | 85 |
| MIMAT0007659 | gga-miR-1752 | 3 | ......_ | 8 | 85 |
| MIMAT0007377 | gma-miR1518 | 3 | _...... | 8 | 85 |
| MIMAT0007368 | gma-miR1510a-3p | 2 | _...... | 7 | 85 |
| MIMAT0005971 | osa-miR444c.1 | 1 | _...... | 6 | 85 |
| MIMAT0005969 | osa-miR444b.1 | 1 | _...... | 6 | 85 |
| MIMAT0026760 | oan-miR-1398-3p | 3 | _...... | 8 | 85 |
| MIMAT0007190 | oan-miR-383-3p | 8 | _...... | 3 | 85 |
| MIMAT0007161 | oan-miR-21-3p | 6 | ......_ | 1 | 85 |
| MIMAT0005416 | cre-miR1162-3p | 1 | _...... | 6 | 85 |
| MIMAT0005389 | cre-miR1149.2 | 1 | _...... | 6 | 85 |
| MIMAT0005369 | tae-miR1134 | 8 | _...... | 3 | 85 |
| MIMAT0017299 | rno-miR-196c-3p | 6 | _...... | 1 | 85 |
| MIMAT0020885 | dme-miR-987-3p | 8 | ......_ | 3 | 85 |
| MIMAT0022937 | cgr-miR-21-3p | 6 | ......_ | 1 | 85 |
| MIMAT0004946 | hsa-miR-744-3p | 1 | ......_ | 6 | 85 |
| MIMAT0004869 | mmu-miR-421-3p | 8 | ......_ | 3 | 85 |
| MIMAT0026643 | gga-miR-21-3p | 8 | _...... | 3 | 85 |
| MIMAT0004820 | mmu-miR-744-3p | 1 | ......_ | 6 | 85 |
| MIMAT0003339 | hsa-miR-421 | 8 | ......_ | 3 | 85 |
| MIMAT0006784 | ptc-miR394b-3p | 1 | ......_ | 6 | 85 |
| MIMAT0006783 | ptc-miR394a-3p | 1 | ......_ | 6 | 85 |
| MIMAT0017175 | rno-miR-421-3p | 8 | ......_ | 3 | 85 |
| MIMAT0004711 | rno-miR-21-3p | 6 | ......_ | 1 | 85 |
| MIMAT0000607 | rno-miR-7a-1-3p | 6 | _...... | 1 | 85 |
| MIMAT0004628 | mmu-miR-21a-3p | 6 | ......_ | 1 | 85 |
