| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | cttcacg | 7 | ||
| MIMAT0034671 | eca-miR-9121 | 2 | ....... | 8 | 100 |
| MIMAT0031378 | osa-miR6249b | 7 | ....... | 1 | 100 |
| MIMAT0024871 | osa-miR6249a | 7 | ....... | 1 | 100 |
| MIMAT0021268 | mtr-miR160f | 8 | ....... | 2 | 100 |
| MIMAT0004476 | mdv2-miR-M29-5p | 2 | ....... | 8 | 100 |
| MIMAT0036354 | gma-miR9734 | 7 | _...... | 2 | 85 |
| MIMAT0033518 | sma-miR-8407-5p | 6 | _...... | 1 | 85 |
| MIMAT0033376 | str-miR-1175-5p | 8 | ......_ | 3 | 85 |
| MIMAT0033371 | str-miR-252b-3p | 3 | ......_ | 8 | 85 |
| MIMAT0033071 | ppc-miR-8284-5p | 6 | _...... | 1 | 85 |
| MIMAT0032908 | ppc-miR-8231-5p | 7 | _...... | 2 | 85 |
| MIMAT0030502 | prd-miR-1175-5p | 8 | ......_ | 3 | 85 |
| MIMAT0028723 | mdo-miR-7355-3p | 1 | ......_ | 6 | 85 |
| MIMAT0025731 | gga-miR-6635-5p | 6 | ......_ | 1 | 85 |
| MIMAT0027316 | ppe-miR6285 | 8 | ......_ | 3 | 85 |
| MIMAT0024599 | hsa-miR-6126 | 6 | ......_ | 1 | 85 |
| MIMAT0019575 | pma-miR-4545-5p | 1 | ......_ | 6 | 85 |
| MIMAT0019330 | oar-miR-412-5p | 1 | ......_ | 6 | 85 |
| MIMAT0018222 | tae-miR395a | 6 | ......_ | 1 | 85 |
| MIMAT0017988 | hsa-miR-3611 | 8 | ......_ | 3 | 85 |
| MIMAT0016691 | cin-miR-4104-5p | 7 | _...... | 2 | 85 |
| MIMAT0016256 | sja-miR-31-3p | 3 | ......_ | 8 | 85 |
| MIMAT0015385 | bmo-miR-3207 | 8 | ......_ | 3 | 85 |
| MIMAT0014125 | osa-miR395y | 6 | ......_ | 1 | 85 |
| MIMAT0014124 | osa-miR395x | 6 | ......_ | 1 | 85 |
| MIMAT0014013 | zma-miR395p-3p | 6 | ......_ | 1 | 85 |
| MIMAT0014012 | zma-miR395o-3p | 6 | ......_ | 1 | 85 |
| MIMAT0014011 | zma-miR395n-3p | 6 | ......_ | 1 | 85 |
| MIMAT0014010 | zma-miR395m-3p | 6 | ......_ | 1 | 85 |
| MIMAT0014009 | zma-miR395l-3p | 6 | ......_ | 1 | 85 |
| MIMAT0014008 | zma-miR395k-3p | 6 | ......_ | 1 | 85 |
| MIMAT0014007 | zma-miR395j-3p | 6 | ......_ | 1 | 85 |
| MIMAT0014006 | zma-miR395i-3p | 6 | ......_ | 1 | 85 |
| MIMAT0014005 | zma-miR395h-3p | 6 | ......_ | 1 | 85 |
| MIMAT0014004 | zma-miR395g-3p | 6 | ......_ | 1 | 85 |
| MIMAT0014003 | zma-miR395f-3p | 6 | ......_ | 1 | 85 |
| MIMAT0014002 | zma-miR395e-3p | 6 | ......_ | 1 | 85 |
| MIMAT0014001 | zma-miR395d-3p | 6 | ......_ | 1 | 85 |
| MIMAT0012872 | hvt-miR-H17-5p | 1 | _...... | 6 | 85 |
| MIMAT0013419 | mtr-miR2647c | 2 | _...... | 7 | 85 |
| MIMAT0013418 | mtr-miR2647b | 2 | _...... | 7 | 85 |
| MIMAT0013417 | mtr-miR2647a | 2 | _...... | 7 | 85 |
| MIMAT0011785 | dme-miR-2279-3p | 2 | _...... | 7 | 85 |
| MIMAT0011356 | sbi-miR395l | 6 | ......_ | 1 | 85 |
| MIMAT0011355 | sbi-miR395k | 6 | ......_ | 1 | 85 |
| MIMAT0011354 | sbi-miR395j | 6 | ......_ | 1 | 85 |
| MIMAT0011353 | sbi-miR395i | 6 | ......_ | 1 | 85 |
| MIMAT0011352 | sbi-miR395h | 6 | ......_ | 1 | 85 |
| MIMAT0011351 | sbi-miR395g | 6 | ......_ | 1 | 85 |
| MIMAT0011350 | sbi-miR395c | 6 | ......_ | 1 | 85 |
| MIMAT0007404 | gga-miR-1550-3p | 1 | ......_ | 6 | 85 |
| MIMAT0005536 | mcmv-miR-m01-3-5p | 8 | ......_ | 3 | 85 |
| MIMAT0004404 | cre-miR917 | 2 | _...... | 7 | 85 |
| MIMAT0003878 | osa-miR395r | 6 | ......_ | 1 | 85 |
| MIMAT0003877 | osa-miR395w | 6 | ......_ | 1 | 85 |
| MIMAT0003876 | osa-miR395v | 6 | ......_ | 1 | 85 |
| MIMAT0003874 | osa-miR395q | 6 | ......_ | 1 | 85 |
| MIMAT0003873 | osa-miR395p | 6 | ......_ | 1 | 85 |
| MIMAT0003871 | osa-miR395n | 6 | ......_ | 1 | 85 |
| MIMAT0003870 | osa-miR395m | 6 | ......_ | 1 | 85 |
| MIMAT0003124 | rno-miR-412-3p | 1 | ......_ | 6 | 85 |
| MIMAT0001701 | zma-miR395a-3p | 6 | ......_ | 1 | 85 |
| MIMAT0001700 | zma-miR395c-3p | 6 | ......_ | 1 | 85 |
| MIMAT0001698 | zma-miR395b-3p | 6 | ......_ | 1 | 85 |
| MIMAT0001433 | sbi-miR395e | 6 | ......_ | 1 | 85 |
| MIMAT0001432 | sbi-miR395d | 6 | ......_ | 1 | 85 |
| MIMAT0001430 | sbi-miR395a | 6 | ......_ | 1 | 85 |
| MIMAT0001429 | sbi-miR395b | 6 | ......_ | 1 | 85 |
| MIMAT0026505 | gga-miR-138-1-3p | 3 | ......_ | 8 | 85 |
| MIMAT0000975 | osa-miR395u | 6 | ......_ | 1 | 85 |
| MIMAT0000973 | osa-miR395a | 6 | ......_ | 1 | 85 |
| MIMAT0000972 | osa-miR395c | 6 | ......_ | 1 | 85 |
| MIMAT0000969 | osa-miR395t | 6 | ......_ | 1 | 85 |
| MIMAT0000968 | osa-miR395s | 6 | ......_ | 1 | 85 |
| MIMAT0000967 | osa-miR395l | 6 | ......_ | 1 | 85 |
| MIMAT0000966 | osa-miR395k | 6 | ......_ | 1 | 85 |
| MIMAT0000965 | osa-miR395j | 6 | ......_ | 1 | 85 |
| MIMAT0000964 | osa-miR395i | 6 | ......_ | 1 | 85 |
| MIMAT0000963 | osa-miR395h | 6 | ......_ | 1 | 85 |
| MIMAT0000962 | osa-miR395g | 6 | ......_ | 1 | 85 |
| MIMAT0000961 | osa-miR395e | 6 | ......_ | 1 | 85 |
| MIMAT0000960 | osa-miR395d | 6 | ......_ | 1 | 85 |
| MIMAT0000959 | osa-miR395b | 6 | ......_ | 1 | 85 |
| MIMAT0000323 | cel-miR-267 | 8 | _...... | 3 | 85 |
