| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | cttcctt | 7 | ||
| MIMAT0036375 | gma-miR9748 | 8 | ....... | 2 | 100 |
| MIMAT0029128 | ghr-miR7486b | 7 | ....... | 1 | 100 |
| MIMAT0029127 | ghr-miR7486a | 7 | ....... | 1 | 100 |
| MIMAT0028568 | mdo-miR-7292-5p | 7 | ....... | 1 | 100 |
| MIMAT0027900 | mmu-miR-6999-5p | 7 | ....... | 1 | 100 |
| MIMAT0022132 | osa-miR5499 | 8 | ....... | 2 | 100 |
| MIMAT0022038 | aca-miR-5418 | 1 | ....... | 7 | 100 |
| MIMAT0014027 | zma-miR482-3p | 2 | ....... | 8 | 100 |
| MIMAT0011996 | bta-miR-2426 | 7 | ....... | 1 | 100 |
| MIMAT0037116 | ata-miR395e-5p | 2 | _...... | 7 | 85 |
| MIMAT0036579 | tch-miR-671-5p | 6 | ......_ | 1 | 85 |
| MIMAT0036442 | ggo-miR-516a-3p | 3 | ......_ | 8 | 85 |
| MIMAT0036286 | chi-miR-671-5p | 6 | ......_ | 1 | 85 |
| MIMAT0035606 | dvi-miR-994-5p | 7 | _...... | 2 | 85 |
| MIMAT0035302 | gsa-miR-184b-5p | 2 | _...... | 7 | 85 |
| MIMAT0035069 | efu-miR-9328 | 3 | ......_ | 8 | 85 |
| MIMAT0034991 | efu-miR-9315 | 6 | _...... | 1 | 85 |
| MIMAT0034681 | eca-miR-9130 | 1 | ......_ | 6 | 85 |
| MIMAT0034627 | eca-miR-9082 | 3 | ......_ | 8 | 85 |
| MIMAT0034313 | cfa-miR-8823 | 1 | _...... | 6 | 85 |
| MIMAT0033744 | pxy-miR-8513-5p | 7 | _...... | 2 | 85 |
| MIMAT0033730 | pxy-miR-7b | 7 | _...... | 2 | 85 |
| MIMAT0033112 | ppc-miR-8297-3p | 1 | _...... | 6 | 85 |
| MIMAT0031843 | cpa-miR8146 | 6 | ......_ | 1 | 85 |
| MIMAT0031633 | bbe-miR-2068-5p | 1 | ......_ | 6 | 85 |
| MIMAT0031524 | ppe-miR8122-3p | 8 | _...... | 3 | 85 |
| MIMAT0030651 | prd-miR-7912-3p | 8 | _...... | 3 | 85 |
| MIMAT0030602 | prd-miR-235-5p | 6 | ......_ | 1 | 85 |
| MIMAT0030551 | prd-miR-7889-3p | 8 | ......_ | 3 | 85 |
| MIMAT0030449 | bta-miR-7864 | 1 | ......_ | 6 | 85 |
| MIMAT0032256 | rgl-miR7810 | 8 | ......_ | 3 | 85 |
| MIMAT0030350 | hhi-miR-129b-3p | 6 | ......_ | 1 | 85 |
| MIMAT0030242 | bdi-miR7751-5p | 3 | ......_ | 8 | 85 |
| MIMAT0029871 | mmu-miR-7678-3p | 2 | _...... | 7 | 85 |
| MIMAT0029853 | mmu-miR-7673-3p | 1 | _...... | 6 | 85 |
| MIMAT0029821 | mmu-miR-7657-3p | 1 | _...... | 6 | 85 |
| MIMAT0029029 | gga-miR-7437-3p | 1 | ......_ | 6 | 85 |
| MIMAT0028839 | mdo-miR-7387-3p | 6 | _...... | 1 | 85 |
| MIMAT0028720 | mdo-miR-7354-5p | 8 | ......_ | 3 | 85 |
| MIMAT0028579 | mdo-miR-7297-3p | 8 | _...... | 3 | 85 |
| MIMAT0028526 | mdo-miR-7276-5p | 3 | ......_ | 8 | 85 |
| MIMAT0028297 | mml-miR-518g-3p | 6 | ......_ | 1 | 85 |
| MIMAT0028234 | hsa-miR-7162-5p | 3 | ......_ | 8 | 85 |
| MIMAT0027750 | mmu-miR-6925-5p | 8 | ......_ | 3 | 85 |
| MIMAT0027637 | hsa-miR-6868-3p | 1 | _...... | 6 | 85 |
| MIMAT0027560 | hsa-miR-6830-5p | 8 | _...... | 3 | 85 |
| MIMAT0027556 | hsa-miR-6828-5p | 6 | ......_ | 1 | 85 |
| MIMAT0025865 | blv-miR-B5-5p | 6 | ......_ | 1 | 85 |
| MIMAT0025655 | gga-miR-6574-5p | 2 | _...... | 7 | 85 |
| MIMAT0025381 | ssc-miR-671-5p | 6 | ......_ | 1 | 85 |
| MIMAT0024810 | hvu-miR6186 | 8 | ......_ | 3 | 85 |
| MIMAT0024251 | ggo-miR-1252 | 8 | _...... | 3 | 85 |
| MIMAT0024039 | ptr-miR-1252 | 8 | _...... | 3 | 85 |
| MIMAT0023996 | cgr-miR-671-5p | 6 | ......_ | 1 | 85 |
| MIMAT0023296 | osa-miR5823 | 6 | _...... | 1 | 85 |
| MIMAT0022216 | mtr-miR5557-3p | 3 | ......_ | 8 | 85 |
| MIMAT0022047 | aca-miR-5426-3p | 8 | ......_ | 3 | 85 |
| MIMAT0027100 | mtr-miR5212-3p | 8 | _...... | 3 | 85 |
| MIMAT0020554 | bdi-miR5056 | 6 | ......_ | 1 | 85 |
| MIMAT0020126 | cel-miR-4920 | 8 | _...... | 3 | 85 |
| MIMAT0019257 | oar-miR-1197-5p | 3 | ......_ | 8 | 85 |
| MIMAT0018188 | hsa-miR-3914 | 6 | _...... | 1 | 85 |
| MIMAT0018810 | tca-miR-2944c-5p | 7 | _...... | 2 | 85 |
| MIMAT0018746 | tca-miR-2944b-5p | 7 | _...... | 2 | 85 |
| MIMAT0018660 | tca-miR-3818-5p | 1 | _...... | 6 | 85 |
| MIMAT0018090 | hsa-miR-3667-3p | 3 | ......_ | 8 | 85 |
| MIMAT0016622 | cin-miR-4067-5p | 7 | _...... | 2 | 85 |
| MIMAT0016485 | cin-miR-4006g-3p | 2 | _...... | 7 | 85 |
| MIMAT0016177 | ppy-miR-1252 | 8 | _...... | 3 | 85 |
| MIMAT0016096 | ppy-miR-671-5p | 6 | ......_ | 1 | 85 |
| MIMAT0015946 | ppy-miR-516a-3p | 3 | ......_ | 8 | 85 |
| MIMAT0015469 | bmo-miR-3283 | 1 | _...... | 6 | 85 |
| MIMAT0014792 | api-miR-3051 | 6 | _...... | 1 | 85 |
| MIMAT0014485 | tgu-miR-2975 | 7 | _...... | 2 | 85 |
| MIMAT0014461 | tgu-miR-2961 | 6 | ......_ | 1 | 85 |
| MIMAT0014304 | aae-miR-2944b-5p | 7 | _...... | 2 | 85 |
| MIMAT0014302 | aae-miR-2944a-5p | 7 | _...... | 2 | 85 |
| MIMAT0015345 | zma-miR395m-5p | 2 | _...... | 7 | 85 |
| MIMAT0015344 | zma-miR395l-5p | 2 | _...... | 7 | 85 |
| MIMAT0015343 | zma-miR395k-5p | 3 | _...... | 8 | 85 |
| MIMAT0012948 | eca-miR-671-5p | 6 | ......_ | 1 | 85 |
| MIMAT0013407 | mtr-miR2640 | 1 | _...... | 6 | 85 |
| MIMAT0012293 | dps-miR-276c | 6 | _...... | 1 | 85 |
| MIMAT0012239 | dps-miR-994-5p | 7 | _...... | 2 | 85 |
| MIMAT0012214 | dme-miR-2500-5p | 8 | _...... | 3 | 85 |
| MIMAT0009996 | bfl-miR-2068-5p | 1 | ......_ | 6 | 85 |
| MIMAT0009980 | osa-miR2055 | 2 | _...... | 7 | 85 |
| MIMAT0009365 | bta-miR-671 | 6 | ......_ | 1 | 85 |
| MIMAT0009101 | dya-miR-5 | 7 | _...... | 2 | 85 |
| MIMAT0009041 | dwi-miR-5 | 7 | _...... | 2 | 85 |
| MIMAT0008961 | dvi-miR-5-5p | 7 | _...... | 2 | 85 |
| MIMAT0008890 | dsi-miR-5 | 7 | _...... | 2 | 85 |
| MIMAT0008829 | dse-miR-5 | 7 | _...... | 2 | 85 |
| MIMAT0008714 | dpe-miR-5 | 7 | _...... | 2 | 85 |
| MIMAT0008691 | dmo-miR-5 | 7 | _...... | 2 | 85 |
| MIMAT0008570 | dgr-miR-5 | 7 | _...... | 2 | 85 |
| MIMAT0008482 | der-miR-5 | 7 | _...... | 2 | 85 |
| MIMAT0008457 | dan-miR-5 | 7 | _...... | 2 | 85 |
| MIMAT0019099 | tca-miR-7-3p | 7 | _...... | 2 | 85 |
| MIMAT0008182 | ptr-miR-516a | 3 | ......_ | 8 | 85 |
| MIMAT0006505 | mml-miR-671-5p | 6 | ......_ | 1 | 85 |
| MIMAT0007478 | gga-miR-1612 | 7 | _...... | 2 | 85 |
| MIMAT0006063 | odi-miR-1503 | 8 | ......_ | 3 | 85 |
| MIMAT0005982 | mdv1-miR-M11-5p | 3 | _...... | 8 | 85 |
| MIMAT0007064 | oan-miR-1375-5p | 3 | ......_ | 8 | 85 |
| MIMAT0006827 | oan-miR-1334 | 8 | ......_ | 3 | 85 |
| MIMAT0005944 | hsa-miR-1252-5p | 8 | _...... | 3 | 85 |
| MIMAT0005593 | hsa-miR-1238-3p | 1 | ......_ | 6 | 85 |
| MIMAT0005169 | ppt-miR1052 | 1 | _...... | 6 | 85 |
| MIMAT0004452 | mdv2-miR-M14-3p | 8 | ......_ | 3 | 85 |
| MIMAT0005513 | dme-miR-994-5p | 8 | _...... | 3 | 85 |
| MIMAT0004315 | ath-miR866-5p | 8 | _...... | 3 | 85 |
| MIMAT0003910 | ppt-miR1219c | 1 | ......_ | 6 | 85 |
| MIMAT0003909 | ppt-miR1219b | 1 | ......_ | 6 | 85 |
| MIMAT0003908 | ppt-miR1219a | 1 | ......_ | 6 | 85 |
| MIMAT0003731 | mmu-miR-671-5p | 6 | ......_ | 1 | 85 |
| MIMAT0003880 | hsa-miR-671-5p | 6 | ......_ | 1 | 85 |
| MIMAT0026624 | hsa-miR-651-3p | 7 | _...... | 2 | 85 |
| MIMAT0006778 | hsa-miR-516a-3p | 3 | ......_ | 8 | 85 |
| MIMAT0002860 | hsa-miR-516b-3p | 3 | ......_ | 8 | 85 |
| MIMAT0017185 | mghv-miR-M1-1-5p | 6 | ......_ | 1 | 85 |
| MIMAT0001207 | dps-miR-5 | 7 | _...... | 2 | 85 |
| MIMAT0000110 | dme-miR-5-5p | 7 | _...... | 2 | 85 |
