| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | cttctgg | 7 | ||
| MIMAT0028743 | mdo-miR-7365-3p | 7 | ....... | 1 | 100 |
| MIMAT0035714 | mmu-miR-3154 | 6 | ......_ | 1 | 85 |
| MIMAT0034868 | efu-miR-9251 | 6 | _...... | 1 | 85 |
| MIMAT0034819 | efu-miR-9223e | 1 | _...... | 6 | 85 |
| MIMAT0034689 | eca-miR-9138 | 1 | _...... | 6 | 85 |
| MIMAT0034369 | cfa-miR-8872 | 1 | _...... | 6 | 85 |
| MIMAT0033050 | ppc-miR-8275-3p | 3 | ......_ | 8 | 85 |
| MIMAT0031766 | hbv-miR-B7-5p | 1 | _...... | 6 | 85 |
| MIMAT0031584 | bbe-miR-129b-5p | 3 | ......_ | 8 | 85 |
| MIMAT0030714 | prd-miR-35a-5p | 3 | ......_ | 8 | 85 |
| MIMAT0029950 | bta-miR-2285z | 6 | _...... | 1 | 85 |
| MIMAT0029646 | crm-miR-254 | 8 | ......_ | 3 | 85 |
| MIMAT0027814 | mmu-miR-6957-5p | 6 | ......_ | 1 | 85 |
| MIMAT0027714 | mmu-miR-6907-5p | 1 | _...... | 6 | 85 |
| MIMAT0027378 | hsa-miR-6738-3p | 1 | ......_ | 6 | 85 |
| MIMAT0025724 | gga-miR-6628-3p | 6 | ......_ | 1 | 85 |
| MIMAT0025529 | bta-miR-3154 | 6 | ......_ | 1 | 85 |
| MIMAT0025258 | ptc-miR6439b | 8 | ......_ | 3 | 85 |
| MIMAT0027295 | ppe-miR6270 | 1 | _...... | 6 | 85 |
| MIMAT0024627 | mml-miR-3154 | 6 | ......_ | 1 | 85 |
| MIMAT0024608 | ptr-miR-3154 | 6 | ......_ | 1 | 85 |
| MIMAT0024402 | ppy-miR-3154 | 6 | ......_ | 1 | 85 |
| MIMAT0024376 | ppy-miR-4782 | 1 | _...... | 6 | 85 |
| MIMAT0022500 | hsa-miR-5706 | 1 | _...... | 6 | 85 |
| MIMAT0022374 | mmu-miR-5623-3p | 2 | _...... | 7 | 85 |
| MIMAT0021548 | asu-miR-5348-5p | 6 | ......_ | 1 | 85 |
| MIMAT0021404 | rmi-miR-5331 | 7 | _...... | 2 | 85 |
| MIMAT0021098 | osa-miR5150-5p | 3 | ......_ | 8 | 85 |
| MIMAT0020080 | bfl-miR-129b | 3 | ......_ | 8 | 85 |
| MIMAT0019944 | hsa-miR-4782-5p | 1 | _...... | 6 | 85 |
| MIMAT0019911 | hsa-miR-4762-3p | 1 | ......_ | 6 | 85 |
| MIMAT0018131 | pab-miR3699 | 8 | ......_ | 3 | 85 |
| MIMAT0016785 | cin-miR-4176-5p | 7 | _...... | 2 | 85 |
| MIMAT0016404 | cin-miR-96-3p | 3 | _...... | 8 | 85 |
| MIMAT0017819 | rno-miR-3557-5p | 3 | ......_ | 8 | 85 |
| MIMAT0016303 | sja-miR-3494 | 8 | ......_ | 3 | 85 |
| MIMAT0016220 | ppy-miR-1299 | 1 | _...... | 6 | 85 |
| MIMAT0015812 | ppy-miR-298 | 8 | ......_ | 3 | 85 |
| MIMAT0015508 | bmo-miR-3321 | 6 | ......_ | 1 | 85 |
| MIMAT0015028 | hsa-miR-3154 | 6 | ......_ | 1 | 85 |
| MIMAT0014489 | tgu-miR-2979-5p | 7 | _...... | 2 | 85 |
| MIMAT0014446 | cel-miR-2953-5p | 8 | ......_ | 3 | 85 |
| MIMAT0012322 | dps-miR-2533 | 1 | _...... | 6 | 85 |
| MIMAT0011674 | ppc-miR-2248 | 8 | _...... | 3 | 85 |
| MIMAT0008081 | ptr-miR-298 | 8 | ......_ | 3 | 85 |
| MIMAT0008018 | ptr-miR-1299 | 1 | _...... | 6 | 85 |
| MIMAT0007969 | ptr-miR-1237 | 3 | ......_ | 8 | 85 |
| MIMAT0006254 | mml-miR-298 | 8 | ......_ | 3 | 85 |
| MIMAT0007708 | gga-miR-1794 | 7 | _...... | 2 | 85 |
| MIMAT0007247 | oan-miR-1419c-5p | 3 | _...... | 8 | 85 |
| MIMAT0005887 | hsa-miR-1299 | 1 | _...... | 6 | 85 |
| MIMAT0005592 | hsa-miR-1237-3p | 3 | ......_ | 8 | 85 |
| MIMAT0005552 | mcmv-miR-m88-1-3p | 6 | ......_ | 1 | 85 |
| MIMAT0005240 | smo-miR1088-5p | 6 | ......_ | 1 | 85 |
| MIMAT0004989 | pta-miR156b | 6 | ......_ | 1 | 85 |
| MIMAT0004988 | pta-miR156a | 6 | ......_ | 1 | 85 |
| MIMAT0004901 | hsa-miR-298 | 8 | ......_ | 3 | 85 |
| MIMAT0031891 | cel-miR-254-5p | 8 | ......_ | 3 | 85 |
