| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | cttgactg | 8 | ||
| MIMAT0034887 | efu-miR-9189f | 1 | _....... | 7 | 87 |
| MIMAT0033333 | str-miR-8367-5p | 8 | ......._ | 2 | 87 |
| MIMAT0030629 | prd-miR-7908-3p | 8 | ......._ | 2 | 87 |
| MIMAT0030292 | bdi-miR7771-5p | 2 | ......._ | 8 | 87 |
| MIMAT0029852 | mmu-miR-7673-5p | 2 | _....... | 8 | 87 |
| MIMAT0025535 | bta-miR-378b | 2 | ......._ | 8 | 87 |
| MIMAT0025029 | sma-miR-2a-5p | 7 | _....... | 1 | 87 |
| MIMAT0016245 | sja-miR-2a-5p | 7 | _....... | 1 | 87 |
| MIMAT0013549 | cte-miR-2692 | 8 | _....... | 2 | 87 |
| MIMAT0019104 | tca-miR-13b-5p | 7 | _....... | 1 | 87 |
| MIMAT0007633 | gga-miR-1731-5p | 2 | ......._ | 8 | 87 |
| MIMAT0007314 | oan-miR-1422p-5p | 8 | _....... | 2 | 87 |
| MIMAT0034465 | eca-miR-8936 | 1 | .a...... | 8 | 87 |
| MIMAT0029075 | gga-miR-7460-3p | 1 | .c...... | 8 | 87 |
| MIMAT0028583 | mdo-miR-449b-3p | 8 | .c...... | 1 | 87 |
| MIMAT0015468 | bmo-miR-3282 | 8 | .a...... | 1 | 87 |
| MIMAT0003497 | mmu-miR-707 | 8 | .a...... | 1 | 87 |
| MIMAT0037171 | ata-miR396c-3p | 7 | ......__ | 2 | 75 |
| MIMAT0036869 | oha-miR-2970-5p | 8 | __...... | 3 | 75 |
| MIMAT0035951 | chi-miR-134 | 3 | __...... | 8 | 75 |
| MIMAT0035589 | dvi-miR-969-3p | 3 | ......__ | 8 | 75 |
| MIMAT0035052 | efu-miR-9324 | 1 | ......__ | 6 | 75 |
| MIMAT0034936 | efu-miR-9285 | 1 | _......_ | 6 | 75 |
| MIMAT0034769 | efu-miR-9189e | 1 | __...... | 6 | 75 |
| MIMAT0034527 | eca-miR-8990 | 3 | _......_ | 8 | 75 |
| MIMAT0034488 | eca-miR-8956 | 1 | _......_ | 6 | 75 |
| MIMAT0034425 | cfa-miR-508b | 1 | __...... | 6 | 75 |
| MIMAT0034421 | cfa-miR-2483 | 6 | _......_ | 1 | 75 |
| MIMAT0034102 | gra-miR8713 | 2 | __...... | 7 | 75 |
| MIMAT0033783 | pxy-miR-8535-5p | 1 | __...... | 6 | 75 |
| MIMAT0033535 | sma-miR-8415-3p | 3 | ......__ | 8 | 75 |
| MIMAT0033507 | sma-miR-8403-3p | 2 | __...... | 7 | 75 |
| MIMAT0033186 | ppc-miR-8245b-5p | 1 | __...... | 6 | 75 |
| MIMAT0033143 | ppc-miR-8229b-3p | 1 | _......_ | 6 | 75 |
| MIMAT0033038 | ppc-miR-2238k-3p | 3 | __...... | 8 | 75 |
| MIMAT0032956 | ppc-miR-8246-5p | 3 | _......_ | 8 | 75 |
| MIMAT0032857 | ppc-miR-2238f-3p | 3 | __...... | 8 | 75 |
| MIMAT0032778 | ath-miR8179 | 1 | __...... | 6 | 75 |
| MIMAT0032674 | ssa-miR-725-3p | 8 | __...... | 3 | 75 |
| MIMAT0032587 | ssa-miR-29b-2-5p | 1 | __...... | 6 | 75 |
| MIMAT0031845 | cpa-miR8148 | 1 | __...... | 6 | 75 |
| MIMAT0030703 | prd-miR-7927e-3p | 7 | __...... | 2 | 75 |
| MIMAT0030645 | prd-miR-7927b-3p | 7 | __...... | 2 | 75 |
| MIMAT0030643 | prd-miR-7939d-3p | 1 | __...... | 6 | 75 |
| MIMAT0030613 | prd-miR-7927d-3p | 7 | __...... | 2 | 75 |
| MIMAT0030547 | prd-miR-7927a-3p | 7 | __...... | 2 | 75 |
| MIMAT0030537 | prd-miR-7940c-3p | 1 | __...... | 6 | 75 |
| MIMAT0032185 | pmi-miR-2011-5p | 6 | __...... | 1 | 75 |
| MIMAT0029829 | mmu-miR-7661-3p | 1 | _......_ | 6 | 75 |
| MIMAT0029786 | tgu-miR-7643-5p | 2 | __...... | 7 | 75 |
| MIMAT0028706 | mdo-miR-7347-5p | 8 | _......_ | 3 | 75 |
| MIMAT0028677 | mdo-miR-7334-3p | 1 | ......__ | 6 | 75 |
| MIMAT0028670 | mdo-miR-2970-5p | 8 | __...... | 3 | 75 |
| MIMAT0028411 | mmu-miR-7221-3p | 1 | __...... | 6 | 75 |
| MIMAT0026407 | sbi-miR437x-3p | 3 | _......_ | 8 | 75 |
| MIMAT0026312 | ccr-miR-725 | 8 | __...... | 3 | 75 |
| MIMAT0026183 | cme-miR7129 | 6 | _......_ | 1 | 75 |
| MIMAT0027822 | mmu-miR-6961-5p | 1 | __...... | 6 | 75 |
| MIMAT0027615 | hsa-miR-6857-3p | 1 | __...... | 6 | 75 |
| MIMAT0025860 | blv-miR-B2-5p | 2 | __...... | 7 | 75 |
| MIMAT0025833 | gga-miR-6562-3p | 7 | __...... | 2 | 75 |
| MIMAT0027251 | pgi-miR6135j | 3 | _......_ | 8 | 75 |
| MIMAT0027246 | pgi-miR6135e.2-5p | 3 | _......_ | 8 | 75 |
| MIMAT0024386 | ppy-miR-4667 | 1 | __...... | 6 | 75 |
| MIMAT0024064 | ptr-miR-3136 | 2 | __...... | 7 | 75 |
| MIMAT0023760 | cgr-miR-134 | 3 | __...... | 8 | 75 |
| MIMAT0023305 | osa-miR5831 | 7 | _......_ | 2 | 75 |
| MIMAT0023256 | osa-miR5789 | 1 | __...... | 6 | 75 |
| MIMAT0022442 | ath-miR5664 | 8 | _......_ | 3 | 75 |
| MIMAT0022368 | mmu-miR-5620-3p | 7 | __...... | 2 | 75 |
| MIMAT0022166 | osa-miR5531 | 3 | __...... | 8 | 75 |
| MIMAT0022088 | aca-miR-5460 | 1 | __...... | 6 | 75 |
| MIMAT0022007 | aca-miR-5398-3p | 7 | __...... | 2 | 75 |
| MIMAT0021909 | aca-miR-2970-5p | 8 | __...... | 3 | 75 |
| MIMAT0021237 | mtr-miR5241c | 1 | __...... | 6 | 75 |
| MIMAT0021236 | mtr-miR5241b | 1 | __...... | 6 | 75 |
| MIMAT0021235 | mtr-miR5241a | 1 | __...... | 6 | 75 |
| MIMAT0027071 | bdi-miR169h-3p | 8 | __...... | 3 | 75 |
| MIMAT0027060 | bdi-miR396e-3p | 7 | ......__ | 2 | 75 |
| MIMAT0027042 | bdi-miR169j-3p | 8 | ......__ | 3 | 75 |
| MIMAT0021024 | hsa-miR-5002-3p | 1 | __...... | 6 | 75 |
| MIMAT0020404 | tcc-miR169n | 8 | _......_ | 3 | 75 |
| MIMAT0019804 | hsa-miR-4704-3p | 7 | __...... | 2 | 75 |
| MIMAT0019663 | pma-miR-4629 | 1 | __...... | 6 | 75 |
| MIMAT0019308 | oar-miR-134-5p | 3 | __...... | 8 | 75 |
| MIMAT0018957 | hsa-miR-4439 | 2 | __...... | 7 | 75 |
| MIMAT0018417 | nlo-miR-929 | 2 | _......_ | 7 | 75 |
| MIMAT0018414 | ngi-miR-929 | 2 | _......_ | 7 | 75 |
| MIMAT0018051 | vvi-miR3639-5p | 2 | _......_ | 7 | 75 |
| MIMAT0016486 | cin-miR-4007-5p | 1 | _......_ | 6 | 75 |
| MIMAT0016314 | sja-miR-3505 | 1 | __...... | 6 | 75 |
| MIMAT0016141 | ppy-miR-943 | 2 | __...... | 7 | 75 |
| MIMAT0015672 | nvi-miR-929 | 2 | _......_ | 7 | 75 |
| MIMAT0015648 | aae-miR-929 | 2 | _......_ | 7 | 75 |
| MIMAT0015582 | bmo-miR-3385-3p | 1 | __...... | 6 | 75 |
| MIMAT0015003 | hsa-miR-3136-5p | 2 | __...... | 7 | 75 |
| MIMAT0014980 | hsa-miR-3118 | 3 | __...... | 8 | 75 |
| MIMAT0014479 | tgu-miR-2970-5p | 8 | __...... | 3 | 75 |
| MIMAT0014472 | tgu-miR-1803-3p | 2 | _......_ | 7 | 75 |
| MIMAT0026959 | tgu-miR-1677-3p | 1 | _......_ | 6 | 75 |
| MIMAT0015350 | zma-miR396f-3p | 7 | ......__ | 2 | 75 |
| MIMAT0015349 | zma-miR396e-3p | 7 | ......__ | 2 | 75 |
| MIMAT0013127 | eca-miR-134 | 3 | __...... | 8 | 75 |
| MIMAT0013101 | eca-miR-1898 | 8 | ......__ | 3 | 75 |
| MIMAT0012885 | bta-miR-2917 | 2 | __...... | 7 | 75 |
| MIMAT0012480 | dsi-miR-969-3p | 3 | ......__ | 8 | 75 |
| MIMAT0012426 | dsi-miR-1012-3p | 8 | _......_ | 3 | 75 |
| MIMAT0012383 | dps-miR-2560-3p | 7 | ......__ | 2 | 75 |
| MIMAT0012276 | dps-miR-969-3p | 3 | ......__ | 8 | 75 |
| MIMAT0011928 | bta-miR-2380 | 2 | __...... | 7 | 75 |
| MIMAT0009883 | cfa-miR-134 | 3 | __...... | 8 | 75 |
| MIMAT0009158 | bmo-miR-929-5p | 2 | _......_ | 7 | 75 |
| MIMAT0009227 | bta-miR-134 | 3 | __...... | 8 | 75 |
| MIMAT0008395 | tca-miR-929-5p | 3 | _......_ | 8 | 75 |
| MIMAT0008349 | ptr-miR-943 | 2 | __...... | 7 | 75 |
| MIMAT0008031 | ptr-miR-134 | 3 | __...... | 8 | 75 |
| MIMAT0007875 | mmu-miR-1898 | 8 | ......__ | 3 | 75 |
| MIMAT0006190 | mml-miR-134-5p | 3 | __...... | 8 | 75 |
| MIMAT0007744 | gga-miR-449b-3p | 6 | __...... | 1 | 75 |
| MIMAT0007720 | gga-miR-1803 | 2 | _......_ | 7 | 75 |
| MIMAT0007641 | gga-miR-1738 | 3 | __...... | 8 | 75 |
| MIMAT0007448 | gga-miR-1586 | 6 | __...... | 1 | 75 |
| MIMAT0005690 | vvi-miR169u | 8 | _......_ | 3 | 75 |
| MIMAT0005689 | vvi-miR169t | 8 | _......_ | 3 | 75 |
| MIMAT0005687 | vvi-miR169r | 8 | _......_ | 3 | 75 |
| MIMAT0017289 | rno-miR-871-3p | 1 | __...... | 6 | 75 |
| MIMAT0005025 | dme-miR-1012-3p | 8 | _......_ | 3 | 75 |
| MIMAT0020866 | dme-miR-969-3p | 3 | ......__ | 8 | 75 |
| MIMAT0004986 | hsa-miR-943 | 2 | __...... | 7 | 75 |
| MIMAT0004441 | ame-miR-929 | 2 | _......_ | 7 | 75 |
| MIMAT0017265 | mmu-miR-871-3p | 1 | __...... | 6 | 75 |
| MIMAT0003753 | dre-miR-725-3p | 8 | __...... | 3 | 75 |
| MIMAT0002291 | ppa-miR-134 | 3 | __...... | 8 | 75 |
| MIMAT0002290 | mne-miR-134 | 3 | __...... | 8 | 75 |
| MIMAT0002289 | ppy-miR-134 | 3 | __...... | 8 | 75 |
| MIMAT0002288 | ggo-miR-134 | 3 | __...... | 8 | 75 |
| MIMAT0002109 | mmu-miR-468-3p | 3 | __...... | 8 | 75 |
| MIMAT0015202 | zma-miR171g-5p | 3 | _......_ | 8 | 75 |
| MIMAT0001737 | zma-miR171c-3p | 1 | __...... | 6 | 75 |
| MIMAT0022865 | osa-miR396c-3p | 7 | ......__ | 2 | 75 |
| MIMAT0000840 | rno-miR-134-5p | 3 | __...... | 8 | 75 |
| MIMAT0017042 | mmu-miR-351-3p | 7 | ......__ | 2 | 75 |
| MIMAT0017041 | rno-miR-351-3p | 7 | ......__ | 2 | 75 |
| MIMAT0000447 | hsa-miR-134-5p | 3 | __...... | 8 | 75 |
| MIMAT0020328 | cel-miR-231-5p | 2 | __...... | 7 | 75 |
| MIMAT0000146 | mmu-miR-134-5p | 3 | __...... | 8 | 75 |
